Wall clock time and date at job start Tue Mar 31 2020 12:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 C 1.50699 * 109.47271 * 120.00403 * 2 1 3 5 5 C 1.38292 * 119.98133 * 299.99833 * 4 2 1 6 6 C 1.38146 * 120.26836 * 179.49667 * 5 4 2 7 7 C 1.38956 * 119.71478 * 0.02562 * 6 5 4 8 8 C 1.38248 * 119.63471 * 1.00449 * 7 6 5 9 9 C 1.37697 * 120.65246 * 358.44619 * 8 7 6 10 10 C 1.51730 * 119.06656 * 178.55347 * 8 7 6 11 11 H 1.08997 * 109.59760 * 187.89206 * 10 8 7 12 12 N 1.46900 * 109.59545 * 308.19701 * 10 8 7 13 13 C 1.46894 * 111.00559 * 274.69251 * 12 10 8 14 14 C 1.52997 * 109.47515 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46735 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99928 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46828 * 90.00241 * 20 18 16 22 22 H 1.48494 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47075 * 330.00183 * 20 18 16 24 24 C 1.52848 * 108.83657 * 68.04348 * 10 8 7 25 25 C 1.52114 * 110.86254 * 276.38858 * 24 10 8 26 26 C 1.51437 * 113.46581 * 67.74644 * 25 24 10 27 27 O 1.36035 * 119.73781 * 181.19562 * 7 6 5 28 28 H 1.09000 * 109.47216 * 300.00062 * 1 2 3 29 29 H 1.09002 * 109.47166 * 59.99830 * 1 2 3 30 30 H 1.09003 * 109.46894 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47216 * 239.99937 * 2 1 3 32 32 H 1.08997 * 109.46788 * 60.00260 * 3 2 1 33 33 H 1.09000 * 109.47132 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47376 * 299.99538 * 3 2 1 35 35 H 1.07994 * 119.86559 * 359.47722 * 5 4 2 36 36 H 1.08006 * 120.14379 * 180.02562 * 6 5 4 37 37 H 1.07997 * 120.12685 * 180.94055 * 9 8 7 38 38 H 1.00899 * 110.99900 * 150.73302 * 12 10 8 39 39 H 1.09002 * 109.47104 * 59.99767 * 13 12 10 40 40 H 1.08998 * 109.46828 * 300.00600 * 13 12 10 41 41 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 42 42 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 43 43 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 44 44 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 45 45 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 46 46 H 1.09006 * 109.20346 * 36.74708 * 24 10 8 47 47 H 1.09003 * 109.20055 * 156.07802 * 24 10 8 48 48 H 1.09004 * 108.68638 * 188.77609 * 25 24 10 49 49 H 1.09000 * 108.68551 * 306.71819 * 25 24 10 50 50 H 1.09006 * 109.19805 * 55.11278 * 26 25 24 51 51 H 1.08998 * 109.20527 * 174.41241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6981 -0.2377 2.4863 6 6 2.1467 -0.8904 3.6181 7 6 2.9374 -2.0260 3.4906 8 6 3.2845 -2.4794 2.2315 9 6 2.8284 -1.8355 1.1031 10 6 4.1756 -3.7012 2.1078 11 1 4.4645 -3.8390 1.0658 12 7 5.3777 -3.5198 2.9324 13 6 6.4125 -2.7788 2.1989 14 6 7.6463 -2.6107 3.0879 15 6 8.7238 -1.8383 2.3241 16 6 9.9393 -1.6733 3.1996 17 1 9.9427 -2.0783 4.2007 18 6 11.0470 -1.0052 2.7224 19 7 11.0430 -0.5124 1.5031 20 14 12.5534 -0.8000 3.8078 21 1 13.4693 -1.9515 3.6063 22 1 13.2545 0.4588 3.4486 23 1 12.1340 -0.7442 5.2312 24 6 3.4020 -4.9273 2.5918 25 6 3.4806 -5.0546 4.1056 26 6 2.7452 -3.9547 4.8423 27 8 3.3592 -2.6831 4.6045 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9562 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.0840 0.6454 2.5826 36 1 1.8841 -0.5197 4.5980 37 1 3.0924 -2.2059 0.1236 38 1 5.7305 -4.4074 3.2575 39 1 6.0283 -1.7975 1.9206 40 1 6.6856 -3.3305 1.2994 41 1 8.0304 -3.5922 3.3659 42 1 7.3734 -2.0592 3.9876 43 1 8.9969 -2.3895 1.4242 44 1 8.3395 -0.8569 2.0465 45 1 11.8224 -0.0427 1.1672 46 1 2.3577 -4.8330 2.2938 47 1 3.8256 -5.8218 2.1351 48 1 3.0559 -6.0150 4.3979 49 1 4.5289 -5.0342 4.4038 50 1 1.7110 -3.9230 4.4994 51 1 2.7614 -4.1662 5.9114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178275961.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:00 Heat of formation + Delta-G solvation = -54.306445 kcal Electronic energy + Delta-G solvation = -27201.804744 eV Core-core repulsion = 23678.363214 eV Total energy + Delta-G solvation = -3523.441530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59901 -39.15341 -38.01633 -36.06167 -35.72916 -34.45827 -32.66159 -31.83477 -30.42356 -28.39023 -27.95922 -27.33141 -25.65539 -24.28439 -23.55560 -23.01493 -21.97919 -21.30365 -20.03814 -18.68839 -18.44979 -17.48983 -16.91706 -16.66824 -16.53519 -15.97847 -15.78276 -15.61739 -15.31444 -15.04705 -14.70775 -14.43531 -14.39342 -14.28444 -14.03870 -13.77283 -13.61101 -13.43036 -13.23436 -13.15805 -12.94349 -12.74369 -12.57663 -12.47485 -12.30889 -12.11789 -11.92317 -11.79473 -11.64135 -11.55284 -11.47059 -11.39486 -11.38767 -11.08195 -10.74020 -10.56828 -9.75430 -9.29434 -9.14244 -8.21148 -6.32588 0.36280 0.44384 1.38378 1.40597 1.52050 2.40097 2.60271 3.05543 3.11502 3.24824 3.64551 3.82849 3.90260 3.96516 4.02812 4.10076 4.17451 4.22528 4.34272 4.34973 4.39972 4.45460 4.51276 4.60648 4.65141 4.69178 4.76610 4.81000 4.82969 4.90696 4.94831 4.97935 5.01030 5.04307 5.08300 5.12746 5.13970 5.18519 5.22357 5.32588 5.40889 5.42198 5.47109 5.50362 5.63646 5.73007 5.73470 5.83875 5.91938 6.11850 6.26693 6.54152 6.78103 6.83781 7.36522 8.90960 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011523 B = 0.003292 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.383943 B = 8504.132465 C =10005.984579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.092 4.092 5 C -0.103 4.103 6 C -0.153 4.153 7 C 0.108 3.892 8 C -0.114 4.114 9 C -0.112 4.112 10 C 0.125 3.875 11 H 0.048 0.952 12 N -0.667 5.667 13 C 0.080 3.920 14 C -0.087 4.087 15 C 0.028 3.972 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.264 1.264 24 C -0.113 4.113 25 C -0.146 4.146 26 C 0.066 3.934 27 O -0.329 6.329 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.346 0.654 39 H 0.044 0.956 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.045 0.955 43 H -0.009 1.009 44 H -0.015 1.015 45 H 0.264 0.736 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.071 0.929 50 H 0.055 0.945 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.213 -5.927 0.206 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.202 4.202 4 C -0.092 4.092 5 C -0.121 4.121 6 C -0.172 4.172 7 C 0.064 3.936 8 C -0.115 4.115 9 C -0.131 4.131 10 C 0.015 3.985 11 H 0.066 0.934 12 N -0.300 5.300 13 C -0.050 4.050 14 C -0.125 4.125 15 C -0.009 4.009 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.791 3.209 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.188 1.188 24 C -0.151 4.151 25 C -0.184 4.184 26 C -0.008 4.008 27 O -0.246 6.246 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.167 0.833 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.010 0.990 44 H 0.003 0.997 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.113 0.887 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -26.218 -5.255 0.552 26.745 hybrid contribution 1.448 -0.328 -0.544 1.581 sum -24.770 -5.582 0.008 25.391 Atomic orbital electron populations 1.21815 0.92983 1.02050 1.02653 1.20123 0.96907 0.95810 0.94364 1.21865 1.00415 0.95176 1.02725 1.20077 0.98072 0.95480 0.95609 1.20993 1.00108 0.99955 0.91036 1.21511 0.98291 0.97276 1.00085 1.18608 0.94771 0.94036 0.86213 1.20350 0.99094 0.98979 0.93065 1.20937 0.98413 0.95856 0.97868 1.20610 0.89840 0.92723 0.95337 0.93445 1.60514 1.05202 1.24717 1.39566 1.21756 0.91333 0.97367 0.94499 1.21314 0.93669 0.99504 0.98021 1.18939 0.93338 0.93834 0.94835 1.21682 1.00222 1.35623 1.00594 0.92312 1.26020 1.02309 0.95041 0.96583 1.70103 1.31092 1.38325 1.17902 0.85415 0.78575 0.77811 0.79062 1.19471 1.20590 1.18845 1.21502 1.00629 0.96151 0.96806 1.21583 1.02755 0.99482 0.94555 1.22600 0.95359 0.81599 1.01220 1.86326 1.64484 1.33282 1.40470 0.92096 0.91189 0.92757 0.90500 0.92073 0.94214 0.90931 0.84067 0.84807 0.85492 0.83270 0.93723 0.95992 0.92838 0.93629 0.99043 0.99664 0.92737 0.90821 0.89887 0.88712 0.91083 0.92661 0.87497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.01 71.98 0.65 -1.22 16 2 C -0.05 -0.94 3.09 -11.54 -0.04 -0.98 16 3 C -0.14 -2.54 9.01 71.98 0.65 -1.90 16 4 C -0.09 -2.08 4.79 -19.81 -0.09 -2.17 16 5 C -0.10 -2.29 8.70 22.26 0.19 -2.09 16 6 C -0.15 -3.89 10.00 22.42 0.22 -3.67 16 7 C 0.11 3.07 5.46 22.44 0.12 3.20 16 8 C -0.11 -3.12 4.61 -19.66 -0.09 -3.21 16 9 C -0.11 -2.83 9.31 22.18 0.21 -2.63 16 10 C 0.12 3.22 2.65 44.45 0.12 3.33 16 11 H 0.05 1.25 7.61 -2.39 -0.02 1.23 16 12 N -0.67 -20.46 4.45 -494.02 -2.20 -22.66 16 13 C 0.08 3.03 5.49 86.30 0.47 3.50 16 14 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16 15 C 0.03 1.58 4.97 29.85 0.15 1.73 16 16 C -0.54 -32.55 9.11 25.60 0.23 -32.31 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 19 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 20 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.11 -2.13 5.35 30.25 0.16 -1.97 16 25 C -0.15 -2.59 5.32 29.79 0.16 -2.43 16 26 C 0.07 1.33 6.49 71.47 0.46 1.79 16 27 O -0.33 -9.48 9.24 -93.94 -0.87 -10.35 16 28 H 0.06 0.77 7.39 -2.39 -0.02 0.76 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 1.33 7.88 -2.39 -0.02 1.31 16 32 H 0.06 1.01 7.37 -2.39 -0.02 0.99 16 33 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.14 2.45 7.09 -2.91 -0.02 2.42 16 36 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.13 2.89 7.89 -2.91 -0.02 2.87 16 38 H 0.35 9.58 6.82 -89.70 -0.61 8.96 16 39 H 0.04 1.87 8.02 -2.39 -0.02 1.85 16 40 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 41 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.54 16 44 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.07 1.29 7.90 -2.38 -0.02 1.27 16 47 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.07 1.47 6.06 -2.39 -0.01 1.46 16 50 H 0.05 0.99 7.90 -2.38 -0.02 0.97 16 51 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -70.49 395.75 3.73 -66.76 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.27 Total: 21.38 kcal Atomic # 6 Polarization: -48.63 SS G_CDS: 4.21 Total: -44.42 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.91 Total: -81.15 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.87 Total: -10.35 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -70.49 3.73 -66.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178275961.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.455 kcal (2) G-P(sol) polarization free energy of solvation -70.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds