Wall clock time and date at job start Tue Mar 31 2020 12:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00533 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00152 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47290 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47265 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46954 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47146 * 59.99973 * 21 19 17 23 23 H 1.48503 * 109.47194 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47259 * 300.00102 * 21 19 17 25 25 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 26 26 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 36 36 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 38 38 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 39 39 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 40 40 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 41 41 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 42 42 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 43 43 H 1.08998 * 109.47778 * 300.00271 * 14 13 11 44 44 H 1.09000 * 109.46812 * 60.00634 * 14 13 11 45 45 H 1.08998 * 109.46867 * 300.00750 * 15 14 13 46 46 H 1.09001 * 109.46905 * 59.99744 * 15 14 13 47 47 H 1.08994 * 109.47238 * 300.00271 * 16 15 14 48 48 H 1.09000 * 109.46920 * 60.00503 * 16 15 14 49 49 H 0.97001 * 119.99838 * 179.97438 * 20 19 17 50 50 H 1.07997 * 120.00544 * 179.97438 * 25 8 7 51 51 H 1.08001 * 120.00265 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0058 -8.8799 -1.2577 13 7 0.9668 -9.2980 -3.2074 14 6 0.5802 -10.7097 -3.1482 15 6 1.0902 -11.4310 -4.3974 16 6 0.6859 -12.9053 -4.3359 17 6 1.1877 -13.6156 -5.5667 18 1 1.7401 -13.0700 -6.3174 19 6 0.9415 -14.9619 -5.7342 20 7 0.2684 -15.6260 -4.8202 21 14 1.5641 -15.8424 -7.2595 22 1 3.0441 -15.7378 -7.3220 23 1 1.1716 -17.2734 -7.1998 24 1 0.9721 -15.2162 -8.4689 25 6 0.0702 -3.9140 -1.6725 26 6 0.4357 -2.5819 -1.7275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6055 -0.2617 -2.1370 35 1 3.1264 -0.6442 -1.2952 36 1 3.4283 -2.7789 -0.1837 37 1 2.7728 -5.1500 -0.0768 38 1 0.9463 -6.7488 -0.1305 39 1 -0.5747 -6.3662 -0.9724 40 1 0.5870 -6.5510 -3.1552 41 1 2.1079 -6.9336 -2.3134 42 1 1.4705 -8.9644 -3.9663 43 1 1.0158 -11.1689 -2.2608 44 1 -0.5060 -10.7873 -3.1015 45 1 0.6550 -10.9720 -5.2851 46 1 2.1764 -11.3534 -4.4438 47 1 1.1207 -13.3646 -3.4482 48 1 -0.4004 -12.9825 -4.2898 49 1 0.0949 -16.5731 -4.9383 50 1 -0.8718 -4.2332 -2.0932 51 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178527540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:40 Heat of formation + Delta-G solvation = -68.111199 kcal Electronic energy + Delta-G solvation = -24591.219701 eV Core-core repulsion = 21067.179553 eV Total energy + Delta-G solvation = -3524.040149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.09487 -39.38505 -36.88768 -35.45800 -33.95048 -33.30288 -31.38265 -31.19079 -30.48315 -27.60733 -27.46769 -26.31669 -24.08014 -22.97368 -22.68875 -21.06981 -20.70013 -20.31233 -19.76155 -17.08631 -16.50400 -16.31720 -16.09947 -15.51470 -15.39994 -15.28109 -14.94005 -14.71530 -14.46224 -14.31905 -13.88217 -13.65393 -13.49696 -13.06287 -13.02370 -12.69394 -12.55362 -12.28911 -12.21553 -12.04803 -11.83375 -11.70245 -11.67046 -11.43826 -11.22370 -11.08213 -10.98349 -10.92622 -10.88627 -10.73218 -10.62801 -9.87796 -9.86801 -9.37585 -9.14249 -9.13315 -8.76437 -8.70623 -8.37390 -6.02089 -4.05396 1.07146 1.16835 2.80435 3.31723 3.34434 3.36635 3.38927 3.56176 4.33252 4.39638 4.43902 4.53512 4.59653 4.62031 4.77408 4.86585 4.88832 4.92881 5.10775 5.12926 5.19799 5.22156 5.30235 5.33575 5.35917 5.40662 5.45157 5.47941 5.54012 5.65138 5.66093 5.74531 5.78002 5.82895 5.85728 5.87785 5.92994 6.02781 6.16225 6.19337 6.36877 6.44191 6.50073 6.59617 6.77664 6.83582 7.00246 7.62745 7.72571 7.75596 7.96441 8.36774 8.42229 9.01045 9.58789 11.09150 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.001465 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.224400 B =19114.441013 C =19393.946408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.086 4.086 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.083 4.083 9 C -0.065 4.065 10 C -0.134 4.134 11 C 0.506 3.494 12 O -0.546 6.546 13 N -0.728 5.728 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.114 4.114 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.398 0.602 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.262 0.738 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.543 34.136 8.472 35.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.131 4.131 8 C -0.083 4.083 9 C -0.103 4.103 10 C -0.174 4.174 11 C 0.292 3.708 12 O -0.424 6.424 13 N -0.378 5.378 14 C -0.007 4.007 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.132 4.132 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.232 0.768 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.011 33.631 9.200 34.997 hybrid contribution 0.581 -0.490 -1.259 1.471 sum 3.592 33.141 7.940 34.268 Atomic orbital electron populations 1.21927 0.95119 1.02287 1.01514 1.21082 0.96189 0.95778 0.97925 1.21858 1.00934 0.95907 1.01841 1.20681 1.01061 0.91239 0.98381 1.19828 0.94773 0.95368 0.98600 1.21004 0.99503 0.92999 0.99930 1.21070 0.96270 0.95901 0.99890 1.19928 0.94649 0.95592 0.98138 1.20332 1.02329 0.89890 0.97754 1.21649 1.03087 0.92341 1.00354 1.20661 0.79531 0.88164 0.82491 1.90701 1.40192 1.78216 1.33317 1.46250 1.57427 1.10887 1.23269 1.21636 1.00164 0.78651 1.00263 1.21888 1.00054 0.99432 0.94517 1.19026 0.97042 0.87901 0.97419 1.21172 1.35451 0.94104 1.05504 0.92702 1.25024 0.95200 0.97658 0.96507 1.69955 1.40091 1.09018 1.34201 0.86642 0.79247 0.78609 0.83391 1.20247 1.21247 1.20241 1.21081 0.99681 0.92949 0.99515 1.21014 0.96276 0.95743 1.00170 0.92035 0.92899 0.92792 0.91139 0.92640 0.92693 0.92651 0.91075 0.91095 0.86322 0.86050 0.90170 0.90170 0.88941 0.88946 0.76808 0.91839 0.91830 0.92750 0.92749 0.96287 0.96284 0.92862 0.86051 0.86284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.76 37.16 0.33 -0.54 16 2 C -0.09 -0.50 2.91 -90.62 -0.26 -0.77 16 3 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 4 C -0.08 -0.44 4.84 -27.89 -0.14 -0.58 16 5 C -0.09 -0.64 4.71 -104.63 -0.49 -1.14 16 6 C -0.12 -0.92 9.70 -39.58 -0.38 -1.30 16 7 C -0.11 -0.97 9.70 -39.58 -0.38 -1.36 16 8 C -0.08 -0.76 5.13 -104.63 -0.54 -1.29 16 9 C -0.07 -0.66 4.63 -27.88 -0.13 -0.79 16 10 C -0.13 -1.32 5.68 -27.88 -0.16 -1.48 16 11 C 0.51 7.19 7.83 -10.98 -0.09 7.11 16 12 O -0.55 -10.05 15.98 5.56 0.09 -9.96 16 13 N -0.73 -10.25 5.56 -60.30 -0.33 -10.58 16 14 C 0.12 2.04 5.67 -4.05 -0.02 2.02 16 15 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.11 -0.97 9.70 -39.58 -0.38 -1.36 16 26 C -0.11 -0.88 7.96 -39.58 -0.32 -1.20 16 27 H 0.06 0.41 6.27 -51.93 -0.33 0.08 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.38 8.09 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.08 0.87 8.04 -51.92 -0.42 0.45 16 39 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.40 4.45 8.47 -40.82 -0.35 4.11 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 51 H 0.12 0.75 8.04 -52.49 -0.42 0.33 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -32.40 416.18 -11.07 -43.47 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.50 Total: -1.07 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -3.32 Total: -18.47 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.40 Total: -36.70 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.40 -11.07 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.639 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds