Wall clock time and date at job start Tue Mar 31 2020 12:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.50696 * 109.46937 * 179.97438 * 10 9 8 12 12 O 1.21281 * 120.00533 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.46492 * 120.00152 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47290 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47265 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.46954 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47146 * 59.99973 * 21 19 17 23 23 H 1.48503 * 109.47194 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47259 * 300.00102 * 21 19 17 25 25 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 26 26 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 36 36 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 38 38 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 39 39 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 40 40 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 41 41 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 42 42 H 0.97000 * 119.99126 * 0.02562 * 13 11 10 43 43 H 1.08998 * 109.47778 * 300.00271 * 14 13 11 44 44 H 1.09000 * 109.46812 * 60.00634 * 14 13 11 45 45 H 1.08998 * 109.46867 * 300.00750 * 15 14 13 46 46 H 1.09001 * 109.46905 * 59.99744 * 15 14 13 47 47 H 1.08994 * 109.47238 * 300.00271 * 16 15 14 48 48 H 1.09000 * 109.46920 * 60.00503 * 16 15 14 49 49 H 0.97001 * 119.99838 * 179.97438 * 20 19 17 50 50 H 1.07997 * 120.00544 * 179.97438 * 25 8 7 51 51 H 1.08001 * 120.00265 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6235 -8.4627 -2.2068 12 8 -0.0058 -8.8799 -1.2577 13 7 0.9668 -9.2980 -3.2074 14 6 0.5802 -10.7097 -3.1482 15 6 1.0902 -11.4310 -4.3974 16 6 0.6859 -12.9053 -4.3359 17 6 1.1877 -13.6156 -5.5667 18 1 1.7401 -13.0700 -6.3174 19 6 0.9415 -14.9619 -5.7342 20 7 0.2684 -15.6260 -4.8202 21 14 1.5641 -15.8424 -7.2595 22 1 3.0441 -15.7378 -7.3220 23 1 1.1716 -17.2734 -7.1998 24 1 0.9721 -15.2162 -8.4689 25 6 0.0702 -3.9140 -1.6725 26 6 0.4357 -2.5819 -1.7275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6055 -0.2617 -2.1370 35 1 3.1264 -0.6442 -1.2952 36 1 3.4283 -2.7789 -0.1837 37 1 2.7728 -5.1500 -0.0768 38 1 0.9463 -6.7488 -0.1305 39 1 -0.5747 -6.3662 -0.9724 40 1 0.5870 -6.5510 -3.1552 41 1 2.1079 -6.9336 -2.3134 42 1 1.4705 -8.9644 -3.9663 43 1 1.0158 -11.1689 -2.2608 44 1 -0.5060 -10.7873 -3.1015 45 1 0.6550 -10.9720 -5.2851 46 1 2.1764 -11.3534 -4.4438 47 1 1.1207 -13.3646 -3.4482 48 1 -0.4004 -12.9825 -4.2898 49 1 0.0949 -16.5731 -4.9383 50 1 -0.8718 -4.2332 -2.0932 51 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178527540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:39 Heat of formation + Delta-G solvation = -84.373898 kcal Electronic energy + Delta-G solvation = -24591.924905 eV Core-core repulsion = 21067.179553 eV Total energy + Delta-G solvation = -3524.745352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.93347 -40.34275 -37.44204 -36.95028 -35.18377 -34.69979 -33.05702 -31.78720 -31.30431 -28.84978 -27.98824 -27.42286 -25.31699 -24.05685 -23.56055 -22.31330 -21.73957 -21.03130 -20.76634 -18.55770 -18.08553 -17.07942 -16.93154 -16.81886 -16.45648 -16.40353 -15.94562 -15.75653 -15.35314 -15.18125 -14.81796 -14.33319 -14.28777 -14.18352 -14.02480 -13.85468 -13.69175 -13.40713 -13.17914 -12.99158 -12.75039 -12.71528 -12.65709 -12.55517 -12.41151 -12.24451 -12.11279 -11.73195 -11.67558 -11.64232 -11.59163 -11.48014 -11.45326 -11.26177 -10.82853 -10.55126 -10.08172 -9.74660 -9.33456 -8.19613 -6.31531 0.45175 0.56298 1.41735 1.44804 1.52723 1.66114 2.24735 2.43103 2.88164 3.14076 3.68921 3.88328 3.90077 4.04352 4.07309 4.12047 4.15191 4.19805 4.22221 4.26649 4.36867 4.42219 4.54636 4.58537 4.64113 4.69305 4.80389 4.82623 4.86250 4.93343 4.97961 4.98757 5.01318 5.08217 5.08585 5.13979 5.16312 5.23836 5.26960 5.37396 5.44706 5.45662 5.49688 5.53093 5.59453 5.69798 5.79026 5.80556 5.83463 6.18254 6.21667 6.60589 6.85846 7.29168 7.38289 8.92293 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.039807 B = 0.001465 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.224400 B =19114.441013 C =19393.946408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.087 4.087 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.093 4.093 9 C -0.060 4.060 10 C -0.120 4.120 11 C 0.504 3.496 12 O -0.593 6.593 13 N -0.717 5.717 14 C 0.128 3.872 15 C -0.102 4.102 16 C 0.023 3.977 17 C -0.544 4.544 18 H 0.067 0.933 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.286 1.286 24 H -0.265 1.265 25 C -0.123 4.123 26 C -0.118 4.118 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.416 0.584 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.068 0.932 47 H -0.009 1.009 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.128 0.872 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 36.349 6.765 37.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.093 4.093 9 C -0.098 4.098 10 C -0.160 4.160 11 C 0.292 3.708 12 O -0.474 6.474 13 N -0.369 5.369 14 C 0.004 3.996 15 C -0.140 4.140 16 C -0.015 4.015 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.200 4.200 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.141 4.141 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.253 0.747 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.010 0.990 48 H 0.010 0.990 49 H 0.072 0.928 50 H 0.146 0.854 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.506 35.885 7.466 36.929 hybrid contribution 0.097 -1.133 -0.666 1.318 sum 4.603 34.752 6.800 35.709 Atomic orbital electron populations 1.21920 0.95355 1.01624 1.01893 1.21053 0.95955 0.96303 0.97461 1.21837 1.01217 0.95175 1.02100 1.20698 1.01572 0.90129 0.98691 1.20070 0.94534 0.96246 0.97843 1.21227 1.00223 0.92787 0.99891 1.21217 0.96286 0.96545 0.99982 1.19837 0.95264 0.94906 0.99275 1.20220 1.01401 0.90750 0.97409 1.21639 1.04548 0.88655 1.01149 1.21459 0.78278 0.89716 0.81340 1.90687 1.42272 1.79299 1.35112 1.46044 1.57461 1.09232 1.24170 1.21205 0.98948 0.80753 0.98671 1.21596 1.00893 0.95630 0.95839 1.18948 0.95039 0.91761 0.95742 1.21664 1.35380 0.94777 1.06334 0.91495 1.26024 0.95293 0.98733 0.99948 1.70108 1.41532 1.09375 1.36517 0.85466 0.79092 0.77058 0.79215 1.19006 1.21143 1.18992 1.21229 0.99916 0.93319 0.99643 1.21208 0.96623 0.95695 1.00096 0.93164 0.92830 0.92149 0.91953 0.92558 0.92248 0.92236 0.90437 0.90371 0.84922 0.85456 0.91495 0.91478 0.86612 0.86627 0.74669 0.93470 0.93463 0.91339 0.91332 0.99042 0.99043 0.92811 0.85447 0.84986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.76 71.98 0.63 -0.90 16 2 C -0.09 -0.84 2.91 -10.79 -0.03 -0.88 16 3 C -0.15 -1.08 9.19 71.98 0.66 -0.41 16 4 C -0.07 -0.71 4.84 29.84 0.14 -0.56 16 5 C -0.09 -1.16 4.71 -19.87 -0.09 -1.25 16 6 C -0.12 -1.75 9.70 22.27 0.22 -1.53 16 7 C -0.12 -1.96 9.70 22.27 0.22 -1.74 16 8 C -0.09 -1.60 5.13 -19.87 -0.10 -1.70 16 9 C -0.06 -1.18 4.63 29.85 0.14 -1.04 16 10 C -0.12 -2.14 5.68 29.85 0.17 -1.97 16 11 C 0.50 13.95 7.83 87.65 0.69 14.64 16 12 O -0.59 -22.22 15.98 -3.03 -0.05 -22.26 16 13 N -0.72 -19.28 5.56 -463.07 -2.57 -21.86 16 14 C 0.13 4.57 5.67 86.38 0.49 5.06 16 15 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 16 C 0.02 1.19 4.97 29.85 0.15 1.34 16 17 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 18 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.94 -57.35 13.29 21.45 0.28 -57.06 16 21 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 C -0.12 -1.95 9.70 22.27 0.22 -1.74 16 26 C -0.12 -1.65 7.96 22.27 0.18 -1.47 16 27 H 0.05 0.62 6.27 -2.39 -0.01 0.61 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.08 0.66 8.09 -2.38 -0.02 0.64 16 35 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 36 H 0.13 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.07 1.47 8.04 -2.38 -0.02 1.45 16 39 H 0.07 1.48 8.04 -2.39 -0.02 1.46 16 40 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.42 8.22 8.47 -92.71 -0.79 7.43 16 43 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 51 H 0.13 1.43 8.04 -2.91 -0.02 1.41 16 Total: -1.00 -71.09 416.18 4.30 -66.79 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.08 Total: 16.41 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 4.52 Total: -27.77 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.29 Total: -78.92 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.09 4.30 -66.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178527540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.583 kcal (2) G-P(sol) polarization free energy of solvation -71.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds