Wall clock time and date at job start Tue Mar 31 2020 12:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.50700 * 109.47430 * 120.00023 * 2 1 3 5 5 C 1.38220 * 120.16027 * 299.97985 * 4 2 1 6 6 C 1.38247 * 120.22339 * 179.97438 * 5 4 2 7 7 C 1.38428 * 120.07848 * 0.51406 * 6 5 4 8 8 C 1.37994 * 119.63679 * 359.97438 * 7 6 5 9 9 C 1.37986 * 120.53035 * 359.07833 * 8 7 6 10 10 O 1.36150 * 120.33413 * 181.53218 * 9 8 7 11 11 C 1.43139 * 115.60297 * 70.23299 * 10 9 8 12 12 C 1.51426 * 110.95507 * 273.21424 * 11 10 9 13 13 C 1.52145 * 113.45598 * 65.49242 * 12 11 10 14 14 C 1.51655 * 119.98753 * 177.80669 * 8 7 6 15 15 H 1.08997 * 109.59680 * 352.54874 * 14 8 7 16 16 N 1.46895 * 109.59817 * 232.23199 * 14 8 7 17 17 C 1.46905 * 111.00000 * 85.00175 * 16 14 8 18 18 C 1.53001 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46736 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.46817 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00068 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99940 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00238 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47194 * 90.00250 * 24 22 20 26 26 H 1.48502 * 109.47224 * 210.00362 * 24 22 20 27 27 H 1.48498 * 109.47218 * 330.00082 * 24 22 20 28 28 H 1.09002 * 109.46793 * 60.00169 * 1 2 3 29 29 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47032 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47032 * 240.00203 * 2 1 3 32 32 H 1.08997 * 109.47338 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46691 * 299.99905 * 3 2 1 34 34 H 1.09004 * 109.47252 * 59.99718 * 3 2 1 35 35 H 1.07998 * 119.88692 * 359.94919 * 5 4 2 36 36 H 1.08002 * 119.95704 * 180.49923 * 6 5 4 37 37 H 1.07998 * 120.17976 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.18167 * 152.84148 * 11 10 9 39 39 H 1.08995 * 109.18229 * 33.59601 * 11 10 9 40 40 H 1.08991 * 108.69056 * 186.52465 * 12 11 10 41 41 H 1.09005 * 108.68639 * 304.47425 * 12 11 10 42 42 H 1.09006 * 109.21166 * 52.82530 * 13 12 11 43 43 H 1.09007 * 109.21263 * 172.14153 * 13 12 11 44 44 H 1.00900 * 111.00217 * 321.05048 * 16 14 8 45 45 H 1.08996 * 109.46757 * 299.99684 * 17 16 14 46 46 H 1.08997 * 109.46919 * 59.99970 * 17 16 14 47 47 H 1.09005 * 109.46889 * 300.00042 * 18 17 16 48 48 H 1.08997 * 109.47323 * 60.00199 * 18 17 16 49 49 H 1.08998 * 109.47115 * 299.99173 * 19 18 17 50 50 H 1.08997 * 109.47273 * 59.99898 * 19 18 17 51 51 H 0.96997 * 120.00105 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7009 -0.2408 2.4874 6 6 2.1607 -0.8918 3.6171 7 6 2.9647 -2.0118 3.4935 8 6 3.3031 -2.4737 2.2379 9 6 2.8312 -1.8394 1.1070 10 8 3.1422 -2.3169 -0.1295 11 6 2.5227 -3.5566 -0.4877 12 6 3.3459 -4.7325 -0.0055 13 6 3.4246 -4.8357 1.5104 14 6 4.2239 -3.6700 2.0931 15 1 4.6196 -3.9471 3.0701 16 7 5.3322 -3.3323 1.1901 17 6 6.4196 -2.6647 1.9181 18 6 7.5528 -2.3288 0.9465 19 6 8.6856 -1.6340 1.7049 20 6 9.8015 -1.3026 0.7478 21 1 9.7119 -1.5619 -0.2968 22 6 10.9368 -0.6683 1.2057 23 7 11.9104 -0.3786 0.3704 24 14 11.0914 -0.2191 3.0123 25 1 11.7227 -1.3430 3.7495 26 1 11.9322 0.9973 3.1497 27 1 9.7425 0.0456 3.5738 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.0810 0.6378 2.5875 36 1 1.8924 -0.5259 4.5972 37 1 3.3244 -2.5219 4.3748 38 1 2.4256 -3.6082 -1.5721 39 1 1.5313 -3.6048 -0.0374 40 1 2.9059 -5.6502 -0.3956 41 1 4.3568 -4.6372 -0.4020 42 1 2.4161 -4.8213 1.9238 43 1 3.9091 -5.7738 1.7814 44 1 5.0112 -2.7650 0.4199 45 1 6.0443 -1.7463 2.3695 46 1 6.7942 -3.3267 2.6988 47 1 7.9281 -3.2470 0.4947 48 1 7.1780 -1.6666 0.1661 49 1 8.3105 -0.7159 2.1570 50 1 9.0603 -2.2965 2.4851 51 1 12.7089 0.0680 0.6925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179108862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:06 Heat of formation + Delta-G solvation = -38.063996 kcal Electronic energy + Delta-G solvation = -27712.404329 eV Core-core repulsion = 24189.667125 eV Total energy + Delta-G solvation = -3522.737204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.09963 -38.03999 -36.98248 -35.30932 -34.29139 -32.85258 -31.68473 -30.16739 -29.63791 -27.57152 -27.31799 -26.06427 -24.50187 -23.59609 -22.17220 -21.46239 -20.52563 -20.12930 -19.32370 -17.94184 -16.98513 -16.57365 -15.94984 -15.49200 -15.23185 -14.88069 -14.57216 -14.36572 -14.25084 -14.08470 -13.85300 -13.78793 -13.43712 -13.00356 -12.71412 -12.52410 -12.47722 -12.37612 -12.22799 -12.18427 -11.84462 -11.63365 -11.41850 -11.30772 -11.08493 -10.90245 -10.86762 -10.79318 -10.60400 -10.59573 -10.00458 -9.87576 -9.65315 -9.50893 -9.09917 -8.78698 -8.58301 -8.47330 -8.12778 -5.97825 -3.94886 1.09924 1.18731 3.29546 3.34894 3.41710 3.46539 3.75229 4.35637 4.50991 4.51069 4.53913 4.69332 4.75907 4.88940 4.93167 4.95893 5.01543 5.14923 5.18609 5.23347 5.30646 5.36215 5.38276 5.42816 5.49054 5.60980 5.64740 5.66671 5.76150 5.78928 5.80556 5.87914 5.89894 5.92549 6.01673 6.05528 6.10612 6.28867 6.30517 6.31383 6.34145 6.43253 6.62356 6.66884 6.68781 7.01688 7.32609 7.38238 7.44600 7.53645 7.78131 7.87591 8.62438 9.08241 9.65184 11.15886 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003490 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.134372 B = 8020.027451 C = 8633.137556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.103 4.103 8 C -0.137 4.137 9 C 0.103 3.897 10 O -0.322 6.322 11 C 0.067 3.933 12 C -0.155 4.155 13 C -0.102 4.102 14 C 0.127 3.873 15 H 0.084 0.916 16 N -0.678 5.678 17 C 0.056 3.944 18 C -0.098 4.098 19 C -0.012 4.012 20 C -0.516 4.516 21 H 0.072 0.928 22 C 0.064 3.936 23 N -0.906 5.906 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.266 1.266 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.355 0.645 45 H 0.022 0.978 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.012 0.988 50 H 0.010 0.990 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.959 -4.282 3.004 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 C -0.200 4.200 4 C -0.087 4.087 5 C -0.126 4.126 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.139 4.139 9 C 0.059 3.941 10 O -0.238 6.238 11 C -0.007 4.007 12 C -0.193 4.193 13 C -0.140 4.140 14 C 0.016 3.984 15 H 0.103 0.897 16 N -0.313 5.313 17 C -0.073 4.073 18 C -0.136 4.136 19 C -0.050 4.050 20 C -0.554 4.554 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.545 5.545 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.191 1.191 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.179 0.821 45 H 0.041 0.959 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.031 0.969 50 H 0.029 0.971 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.362 -4.746 2.852 27.916 hybrid contribution -0.205 1.086 1.385 1.772 sum -27.567 -3.660 4.237 28.129 Atomic orbital electron populations 1.21846 0.94576 1.01623 1.01792 1.20027 0.95414 0.96082 0.95906 1.21841 1.01794 0.94779 1.01618 1.20026 0.96669 0.96537 0.95426 1.20851 1.00426 0.99875 0.91407 1.21158 0.98553 0.96027 0.98538 1.20957 0.98231 0.96642 0.96391 1.21171 0.99682 0.99933 0.93114 1.18237 0.96660 0.94727 0.84453 1.86257 1.68718 1.38939 1.29860 1.22544 0.95103 0.82632 1.00425 1.21623 1.03367 0.97660 0.96637 1.21322 0.99033 0.98155 0.95494 1.20753 0.89351 0.90997 0.97296 0.89739 1.60894 1.08542 1.50582 1.11254 1.22153 0.91948 0.95979 0.97177 1.21414 0.94331 1.00391 0.97434 1.19534 0.94102 0.95122 0.96231 1.21168 0.99984 1.37805 0.96463 0.91026 1.25036 0.95680 0.95380 0.97508 1.69922 1.07376 1.42453 1.34759 0.86775 0.78298 0.78067 0.86126 1.20325 1.21454 1.19103 0.92341 0.92904 0.92658 0.89452 0.92162 0.92350 0.92729 0.85896 0.85968 0.85775 0.88573 0.93090 0.91236 0.88774 0.92483 0.90931 0.82111 0.95947 0.91816 0.92069 0.93122 0.96944 0.97137 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 2 C -0.06 -0.56 3.06 -91.77 -0.28 -0.84 16 3 C -0.14 -1.39 9.01 37.16 0.33 -1.05 16 4 C -0.09 -0.99 4.80 -104.40 -0.50 -1.49 16 5 C -0.11 -1.13 8.72 -39.58 -0.35 -1.47 16 6 C -0.12 -1.30 10.05 -39.51 -0.40 -1.69 16 7 C -0.10 -1.18 9.69 -39.60 -0.38 -1.56 16 8 C -0.14 -1.72 4.58 -104.33 -0.48 -2.19 16 9 C 0.10 1.31 5.26 -39.45 -0.21 1.11 16 10 O -0.32 -4.06 6.78 -20.22 -0.14 -4.20 16 11 C 0.07 0.66 6.48 36.36 0.24 0.89 16 12 C -0.16 -1.53 5.27 -27.96 -0.15 -1.68 16 13 C -0.10 -1.06 5.55 -27.23 -0.15 -1.21 16 14 C 0.13 1.60 2.70 -68.46 -0.18 1.41 16 15 H 0.08 1.05 7.60 -51.93 -0.39 0.65 16 16 N -0.68 -10.31 4.94 -107.52 -0.53 -10.84 16 17 C 0.06 0.99 5.49 -3.82 -0.02 0.97 16 18 C -0.10 -2.08 5.41 -26.73 -0.14 -2.22 16 19 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 20 C -0.52 -15.35 9.66 -34.44 -0.33 -15.68 16 21 H 0.07 2.28 7.99 -52.49 -0.42 1.87 16 22 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 23 N -0.91 -28.75 13.96 55.43 0.77 -27.98 16 24 Si 0.88 22.48 27.47 -169.99 -4.67 17.81 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.41 7.40 -51.93 -0.38 0.02 16 31 H 0.09 0.95 7.00 -51.93 -0.36 0.58 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.48 7.40 -51.93 -0.38 0.10 16 35 H 0.12 1.05 7.12 -52.49 -0.37 0.68 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.21 7.98 -52.49 -0.42 0.80 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.46 7.89 -51.93 -0.41 0.05 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.12 6.80 -51.93 -0.35 0.77 16 42 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.35 5.64 5.28 -39.29 -0.21 5.43 16 45 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 46 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 47 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 50 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 51 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -32.10 388.98 -10.70 -42.80 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -9.11 Total: 2.62 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -2.88 Total: -26.06 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.24 Total: -38.82 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.14 Total: -4.20 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.10 -10.70 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.732 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds