Wall clock time and date at job start Tue Mar 31 2020 12:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47136 * 2 1 4 4 C 1.50700 * 109.47430 * 120.00023 * 2 1 3 5 5 C 1.38220 * 120.16027 * 299.97985 * 4 2 1 6 6 C 1.38247 * 120.22339 * 179.97438 * 5 4 2 7 7 C 1.38428 * 120.07848 * 0.51406 * 6 5 4 8 8 C 1.37994 * 119.63679 * 359.97438 * 7 6 5 9 9 C 1.37986 * 120.53035 * 359.07833 * 8 7 6 10 10 O 1.36150 * 120.33413 * 181.53218 * 9 8 7 11 11 C 1.43139 * 115.60297 * 70.23299 * 10 9 8 12 12 C 1.51426 * 110.95507 * 273.21424 * 11 10 9 13 13 C 1.52145 * 113.45598 * 65.49242 * 12 11 10 14 14 C 1.51655 * 119.98753 * 177.80669 * 8 7 6 15 15 H 1.08997 * 109.59680 * 352.54874 * 14 8 7 16 16 N 1.46895 * 109.59817 * 232.23199 * 14 8 7 17 17 C 1.46905 * 111.00000 * 85.00175 * 16 14 8 18 18 C 1.53001 * 109.47003 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.46736 * 180.02562 * 18 17 16 20 20 C 1.50707 * 109.46817 * 180.02562 * 19 18 17 21 21 H 1.07997 * 120.00068 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99766 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99940 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00238 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47194 * 90.00250 * 24 22 20 26 26 H 1.48502 * 109.47224 * 210.00362 * 24 22 20 27 27 H 1.48498 * 109.47218 * 330.00082 * 24 22 20 28 28 H 1.09002 * 109.46793 * 60.00169 * 1 2 3 29 29 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47032 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47032 * 240.00203 * 2 1 3 32 32 H 1.08997 * 109.47338 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46691 * 299.99905 * 3 2 1 34 34 H 1.09004 * 109.47252 * 59.99718 * 3 2 1 35 35 H 1.07998 * 119.88692 * 359.94919 * 5 4 2 36 36 H 1.08002 * 119.95704 * 180.49923 * 6 5 4 37 37 H 1.07998 * 120.17976 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.18167 * 152.84148 * 11 10 9 39 39 H 1.08995 * 109.18229 * 33.59601 * 11 10 9 40 40 H 1.08991 * 108.69056 * 186.52465 * 12 11 10 41 41 H 1.09005 * 108.68639 * 304.47425 * 12 11 10 42 42 H 1.09006 * 109.21166 * 52.82530 * 13 12 11 43 43 H 1.09007 * 109.21263 * 172.14153 * 13 12 11 44 44 H 1.00900 * 111.00217 * 321.05048 * 16 14 8 45 45 H 1.08996 * 109.46757 * 299.99684 * 17 16 14 46 46 H 1.08997 * 109.46919 * 59.99970 * 17 16 14 47 47 H 1.09005 * 109.46889 * 300.00042 * 18 17 16 48 48 H 1.08997 * 109.47323 * 60.00199 * 18 17 16 49 49 H 1.08998 * 109.47115 * 299.99173 * 19 18 17 50 50 H 1.08997 * 109.47273 * 59.99898 * 19 18 17 51 51 H 0.96997 * 120.00105 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7009 -0.2408 2.4874 6 6 2.1607 -0.8918 3.6171 7 6 2.9647 -2.0118 3.4935 8 6 3.3031 -2.4737 2.2379 9 6 2.8312 -1.8394 1.1070 10 8 3.1422 -2.3169 -0.1295 11 6 2.5227 -3.5566 -0.4877 12 6 3.3459 -4.7325 -0.0055 13 6 3.4246 -4.8357 1.5104 14 6 4.2239 -3.6700 2.0931 15 1 4.6196 -3.9471 3.0701 16 7 5.3322 -3.3323 1.1901 17 6 6.4196 -2.6647 1.9181 18 6 7.5528 -2.3288 0.9465 19 6 8.6856 -1.6340 1.7049 20 6 9.8015 -1.3026 0.7478 21 1 9.7119 -1.5619 -0.2968 22 6 10.9368 -0.6683 1.2057 23 7 11.9104 -0.3786 0.3704 24 14 11.0914 -0.2191 3.0123 25 1 11.7227 -1.3430 3.7495 26 1 11.9322 0.9973 3.1497 27 1 9.7425 0.0456 3.5738 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.0810 0.6378 2.5875 36 1 1.8924 -0.5259 4.5972 37 1 3.3244 -2.5219 4.3748 38 1 2.4256 -3.6082 -1.5721 39 1 1.5313 -3.6048 -0.0374 40 1 2.9059 -5.6502 -0.3956 41 1 4.3568 -4.6372 -0.4020 42 1 2.4161 -4.8213 1.9238 43 1 3.9091 -5.7738 1.7814 44 1 5.0112 -2.7650 0.4199 45 1 6.0443 -1.7463 2.3695 46 1 6.7942 -3.3267 2.6988 47 1 7.9281 -3.2470 0.4947 48 1 7.1780 -1.6666 0.1661 49 1 8.3105 -0.7159 2.1570 50 1 9.0603 -2.2965 2.4851 51 1 12.7089 0.0680 0.6925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179108862.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:05 Heat of formation + Delta-G solvation = -55.085356 kcal Electronic energy + Delta-G solvation = -27713.142431 eV Core-core repulsion = 24189.667125 eV Total energy + Delta-G solvation = -3523.475306 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95958 -38.88242 -38.02805 -36.47647 -35.59557 -34.50166 -33.10395 -31.51183 -30.44085 -28.74980 -28.00771 -27.54398 -25.46712 -24.43162 -23.86782 -22.28907 -21.92080 -21.34962 -20.28414 -18.94261 -18.77253 -17.75853 -16.97595 -16.45162 -16.29630 -16.14678 -15.81072 -15.70589 -15.34751 -15.13594 -14.84300 -14.75682 -14.56900 -14.26404 -14.10430 -13.73185 -13.51262 -13.38920 -13.23948 -13.15310 -12.93366 -12.91608 -12.69972 -12.53653 -12.25296 -12.08623 -11.91497 -11.81335 -11.66440 -11.60412 -11.54898 -11.43379 -11.37383 -11.23376 -10.83130 -10.77734 -9.64196 -9.42580 -9.31842 -8.30641 -6.35039 0.27137 0.35060 1.33762 1.36252 1.48623 2.35213 2.49641 2.89536 3.04131 3.30559 3.62830 3.69666 3.91154 3.97033 4.09294 4.12249 4.18075 4.22333 4.29116 4.31778 4.38265 4.43288 4.48648 4.52794 4.56965 4.65047 4.70682 4.78141 4.83075 4.86636 4.87341 4.95632 4.96337 5.00531 5.05154 5.09597 5.10855 5.15406 5.22918 5.29147 5.36367 5.44676 5.47492 5.51144 5.53355 5.58560 5.63006 5.64540 5.84578 6.14709 6.28727 6.51273 6.55238 6.72520 7.29317 8.86531 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012882 B = 0.003490 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.134372 B = 8020.027451 C = 8633.137556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.098 4.098 5 C -0.110 4.110 6 C -0.126 4.126 7 C -0.113 4.113 8 C -0.152 4.152 9 C 0.085 3.915 10 O -0.340 6.340 11 C 0.064 3.936 12 C -0.152 4.152 13 C -0.098 4.098 14 C 0.125 3.875 15 H 0.087 0.913 16 N -0.679 5.679 17 C 0.071 3.929 18 C -0.088 4.088 19 C -0.007 4.007 20 C -0.534 4.534 21 H 0.028 0.972 22 C 0.002 3.998 23 N -0.952 5.952 24 Si 0.954 3.046 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.249 1.249 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.110 0.890 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.350 0.650 45 H 0.016 0.984 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.036 0.964 49 H 0.014 0.986 50 H 0.021 0.979 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.163 -4.263 5.397 30.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.099 4.099 5 C -0.128 4.128 6 C -0.144 4.144 7 C -0.132 4.132 8 C -0.154 4.154 9 C 0.041 3.959 10 O -0.257 6.257 11 C -0.010 4.010 12 C -0.190 4.190 13 C -0.136 4.136 14 C 0.015 3.985 15 H 0.105 0.895 16 N -0.313 5.313 17 C -0.058 4.058 18 C -0.126 4.126 19 C -0.045 4.045 20 C -0.572 4.572 21 H 0.047 0.953 22 C -0.194 4.194 23 N -0.593 5.593 24 Si 0.777 3.223 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.173 1.173 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.174 0.826 45 H 0.035 0.965 46 H 0.091 0.909 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.033 0.967 50 H 0.040 0.960 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -29.592 -4.746 5.239 30.424 hybrid contribution 0.469 1.071 0.515 1.277 sum -29.123 -3.675 5.754 29.912 Atomic orbital electron populations 1.21795 0.92779 1.01870 1.02753 1.20016 0.96834 0.95686 0.94783 1.21828 1.00165 0.95050 1.02780 1.20282 0.96728 0.96401 0.96481 1.21140 1.00293 1.00346 0.91013 1.21478 0.97798 0.95475 0.99683 1.21214 0.98450 0.97133 0.96401 1.21195 1.00335 1.00186 0.93689 1.18476 0.97384 0.95490 0.84520 1.86228 1.69325 1.40067 1.30107 1.22698 0.95242 0.81658 1.01353 1.21596 1.02215 0.98771 0.96376 1.21306 0.99285 0.97317 0.95688 1.20841 0.88793 0.91996 0.96912 0.89478 1.60877 1.09225 1.49741 1.11494 1.21872 0.91500 0.96189 0.96214 1.21230 0.94632 0.99182 0.97539 1.19458 0.93680 0.95665 0.95669 1.21495 1.02016 1.38140 0.95582 0.95339 1.26062 0.95024 0.95069 1.03251 1.70077 1.08234 1.43443 1.37505 0.85599 0.79210 0.78285 0.79194 1.18770 1.20709 1.17310 0.91301 0.93011 0.91747 0.90958 0.94624 0.91138 0.91631 0.83908 0.83532 0.84420 0.87229 0.92213 0.89042 0.91103 0.91296 0.90433 0.82639 0.96528 0.90850 0.92984 0.94553 0.96735 0.96027 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.01 71.98 0.65 -1.24 16 2 C -0.05 -1.05 3.06 -11.54 -0.04 -1.08 16 3 C -0.14 -2.63 9.01 71.98 0.65 -1.98 16 4 C -0.10 -2.17 4.80 -19.72 -0.09 -2.27 16 5 C -0.11 -2.08 8.72 22.27 0.19 -1.89 16 6 C -0.13 -2.33 10.05 22.32 0.22 -2.10 16 7 C -0.11 -2.37 9.69 22.26 0.22 -2.16 16 8 C -0.15 -3.65 4.58 -19.68 -0.09 -3.74 16 9 C 0.08 2.12 5.26 22.36 0.12 2.24 16 10 O -0.34 -8.64 6.78 -95.26 -0.65 -9.28 16 11 C 0.06 1.21 6.48 71.47 0.46 1.67 16 12 C -0.15 -2.85 5.27 29.80 0.16 -2.70 16 13 C -0.10 -1.89 5.55 30.27 0.17 -1.73 16 14 C 0.12 3.01 2.70 44.43 0.12 3.13 16 15 H 0.09 2.03 7.60 -2.39 -0.02 2.01 16 16 N -0.68 -20.51 4.94 -494.09 -2.44 -22.95 16 17 C 0.07 2.49 5.49 86.30 0.47 2.97 16 18 C -0.09 -3.80 5.41 30.59 0.17 -3.63 16 19 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 20 C -0.53 -32.68 9.66 25.60 0.25 -32.43 16 21 H 0.03 1.92 7.99 -2.91 -0.02 1.89 16 22 C 0.00 0.15 5.47 84.65 0.46 0.61 16 23 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 24 Si 0.95 45.92 27.47 68.60 1.88 47.80 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.78 7.40 -2.39 -0.02 0.76 16 31 H 0.07 1.58 7.00 -2.39 -0.02 1.56 16 32 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.05 7.40 -2.38 -0.02 1.03 16 35 H 0.14 2.04 7.12 -2.91 -0.02 2.02 16 36 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 2.39 7.98 -2.91 -0.02 2.37 16 38 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.00 7.89 -2.39 -0.02 0.98 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.69 6.80 -2.38 -0.02 1.67 16 42 H 0.07 1.18 7.90 -2.38 -0.02 1.16 16 43 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 44 H 0.35 11.32 5.28 -89.69 -0.47 10.85 16 45 H 0.02 0.59 8.01 -2.39 -0.02 0.58 16 46 H 0.07 2.42 8.06 -2.39 -0.02 2.40 16 47 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.01 0.71 7.20 -2.39 -0.02 0.70 16 50 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 51 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -70.70 388.98 3.66 -67.05 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.36 Total: 25.44 kcal Atomic # 6 Polarization: -50.75 SS G_CDS: 4.21 Total: -46.54 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.14 Total: -84.46 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -0.65 Total: -9.28 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Total: -70.70 3.66 -67.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179108862.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.960 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds