Wall clock time and date at job start Tue Mar 31 2020 11:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 119.99419 * 2 1 4 4 C 1.38233 * 119.99834 * 179.72823 * 3 2 1 5 5 C 1.38244 * 120.00092 * 0.27286 * 4 3 2 6 6 C 1.38237 * 119.99699 * 359.95702 * 5 4 3 7 7 C 1.50699 * 120.00019 * 180.02562 * 6 5 4 8 8 C 1.38227 * 120.00337 * 180.18810 * 2 1 3 9 9 C 1.50710 * 120.00089 * 0.02562 * 8 2 1 10 10 C 1.50697 * 109.46985 * 270.21058 * 9 8 2 11 11 O 1.21286 * 120.00315 * 354.12051 * 10 9 8 12 12 N 1.34777 * 120.00208 * 174.11791 * 10 9 8 13 13 C 1.46491 * 120.00256 * 185.41065 * 12 10 9 14 14 C 1.50697 * 109.47547 * 89.99701 * 13 12 10 15 15 H 1.07993 * 120.00075 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99936 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99641 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00019 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46955 * 90.00000 * 18 16 14 20 20 H 1.48499 * 109.46980 * 209.99711 * 18 16 14 21 21 H 1.48490 * 109.47386 * 329.99964 * 18 16 14 22 22 C 1.46508 * 119.99627 * 5.40354 * 12 10 9 23 23 C 1.52995 * 109.46663 * 95.94164 * 22 12 10 24 24 C 1.52993 * 109.47487 * 54.28647 * 23 22 12 25 25 C 1.53002 * 109.47077 * 174.28717 * 23 22 12 26 26 C 1.52998 * 109.47206 * 294.28392 * 23 22 12 27 27 H 1.09000 * 109.47437 * 90.00398 * 1 2 3 28 28 H 1.09007 * 109.47028 * 210.00619 * 1 2 3 29 29 H 1.09002 * 109.47317 * 330.00074 * 1 2 3 30 30 H 1.07997 * 120.00406 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.00747 * 180.25271 * 4 3 2 32 32 H 1.07994 * 120.00210 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.46794 * 90.00203 * 7 6 5 34 34 H 1.09003 * 109.47071 * 209.99849 * 7 6 5 35 35 H 1.09000 * 109.47215 * 330.00141 * 7 6 5 36 36 H 1.09000 * 109.46605 * 30.20927 * 9 8 2 37 37 H 1.08998 * 109.47223 * 150.20942 * 9 8 2 38 38 H 1.09000 * 109.47138 * 210.00130 * 13 12 10 39 39 H 1.09002 * 109.47453 * 329.99306 * 13 12 10 40 40 H 0.97001 * 119.99262 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.46891 * 215.93924 * 22 12 10 42 42 H 1.08998 * 109.46942 * 335.94569 * 22 12 10 43 43 H 1.09002 * 109.47336 * 59.99828 * 24 23 22 44 44 H 1.09007 * 109.47363 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47270 * 300.00134 * 24 23 22 46 46 H 1.09000 * 109.46859 * 60.00015 * 25 23 22 47 47 H 1.08997 * 109.47340 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47087 * 300.00356 * 25 23 22 49 49 H 1.09005 * 109.46926 * 64.17440 * 26 23 22 50 50 H 1.09001 * 109.47108 * 184.17130 * 26 23 22 51 51 H 1.09002 * 109.47747 * 304.17274 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0057 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0014 8 6 2.1982 -1.1970 -0.0039 9 6 1.4448 -2.5023 -0.0088 10 6 1.1886 -2.9397 1.4104 11 8 1.6699 -2.3169 2.3332 12 7 0.4246 -4.0228 1.6542 13 6 0.0775 -4.3793 3.0321 14 6 -1.2094 -3.6970 3.4186 15 1 -1.7182 -3.0618 2.7087 16 6 -1.7379 -3.8847 4.6782 17 7 -2.8608 -3.2888 5.0156 18 14 -0.8583 -4.9840 5.9058 19 1 0.0994 -4.1726 6.6994 20 1 -1.8537 -5.6051 6.8160 21 1 -0.1212 -6.0480 5.1782 22 6 -0.0590 -4.8437 0.5412 23 6 0.8829 -6.0321 0.3373 24 6 1.0346 -6.7946 1.6550 25 6 0.3036 -6.9650 -0.7280 26 6 2.2523 -5.5250 -0.1191 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5140 29 1 -0.3634 0.8900 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.1204 2.1326 0.0098 32 1 5.3517 0.0002 0.0097 33 1 4.5118 -2.8186 1.0292 34 1 3.7471 -3.2609 -0.5160 35 1 5.2885 -2.3708 -0.5085 36 1 0.4942 -2.3710 -0.5258 37 1 2.0357 -3.2610 -0.5218 38 1 -0.0470 -5.4595 3.1076 39 1 0.8747 -4.0578 3.7024 40 1 -3.2323 -3.4206 5.9019 41 1 -1.0608 -5.2088 0.7675 42 1 -0.0878 -4.2428 -0.3677 43 1 0.0590 -7.1559 1.9802 44 1 1.7053 -7.6415 1.5096 45 1 1.4473 -6.1299 2.4140 46 1 0.1955 -6.4218 -1.6667 47 1 0.9747 -7.8114 -0.8736 48 1 -0.6721 -7.3263 -0.4029 49 1 2.6976 -4.9201 0.6709 50 1 2.9005 -6.3742 -0.3355 51 1 2.1346 -4.9194 -1.0177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180568640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:19 Heat of formation + Delta-G solvation = -25.290685 kcal Electronic energy + Delta-G solvation = -28605.961212 eV Core-core repulsion = 25083.777900 eV Total energy + Delta-G solvation = -3522.183312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22061 -38.91855 -37.00886 -33.99056 -33.39885 -33.09887 -32.30200 -29.47496 -27.99520 -27.41072 -26.99294 -26.43243 -26.15243 -25.41433 -22.45790 -20.70574 -20.50640 -19.31616 -17.93169 -17.03139 -16.52219 -16.08891 -15.96390 -15.30372 -14.93400 -14.34290 -14.23982 -13.93514 -13.82950 -13.57334 -13.43644 -13.02021 -12.86238 -12.77113 -12.70933 -12.58676 -12.47905 -12.26810 -12.07793 -11.82848 -11.60522 -11.54384 -11.42582 -11.39692 -11.22448 -11.00217 -10.85132 -10.66060 -10.61638 -10.56257 -10.48284 -10.25525 -10.02384 -9.49162 -9.02891 -8.56228 -8.32599 -8.29678 -7.61948 -6.07449 -4.05059 1.57019 1.59754 3.29152 3.35023 3.37510 3.39683 3.76784 4.06836 4.40603 4.85098 4.92374 4.93239 4.96994 5.01437 5.10437 5.12967 5.23998 5.27749 5.37040 5.44289 5.54521 5.60490 5.61962 5.63560 5.68564 5.77913 5.81907 5.82808 5.84157 5.88676 5.90048 6.01470 6.04924 6.08579 6.12519 6.13505 6.22283 6.31931 6.35097 6.45356 6.49035 6.59487 6.67281 6.73963 6.79334 6.90854 6.99608 7.24655 7.41165 7.65055 8.31240 8.49599 8.95219 9.05693 9.53775 11.06064 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.005240 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.896339 B = 5342.547245 C = 6723.343900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.065 4.065 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.130 4.130 6 C -0.068 4.068 7 C -0.118 4.118 8 C -0.057 4.057 9 C -0.119 4.119 10 C 0.516 3.484 11 O -0.533 6.533 12 N -0.590 5.590 13 C 0.209 3.791 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.898 5.898 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.118 3.882 23 C -0.087 4.087 24 C -0.145 4.145 25 C -0.137 4.137 26 C -0.146 4.146 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.040 0.960 39 H 0.034 0.966 40 H 0.264 0.736 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.995 -1.360 -15.492 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.058 4.058 9 C -0.159 4.159 10 C 0.302 3.698 11 O -0.409 6.409 12 N -0.321 5.321 13 C 0.089 3.911 14 C -0.565 4.565 15 H 0.091 0.909 16 C -0.129 4.129 17 N -0.537 5.537 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.006 4.006 23 C -0.088 4.088 24 C -0.202 4.202 25 C -0.195 4.195 26 C -0.203 4.203 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.073 0.927 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.104 -1.016 -14.812 18.540 hybrid contribution 0.207 -0.444 0.841 0.973 sum 11.311 -1.460 -13.972 18.036 Atomic orbital electron populations 1.20856 0.91236 1.03777 1.01728 1.19733 0.96016 0.92544 0.98249 1.20919 0.94208 0.97225 1.02231 1.21002 0.94267 0.97642 1.00747 1.20870 0.99253 0.92026 1.02657 1.19629 0.92997 0.95269 0.98924 1.20895 0.99322 0.94569 1.02663 1.19060 0.92729 0.93465 1.00517 1.21088 1.01688 0.96135 0.96975 1.20085 0.78999 0.80616 0.90076 1.90683 1.50241 1.53998 1.46015 1.47815 1.49915 1.26098 1.08257 1.19845 0.96669 0.96354 0.78263 1.21357 1.05876 1.29492 0.99764 0.90865 1.24835 0.94725 0.95596 0.97785 1.69900 1.19694 1.43461 1.20648 0.86902 0.79804 0.81413 0.81919 1.20008 1.21133 1.18978 1.21584 0.97828 0.91459 0.89727 1.20998 0.95792 0.95985 0.96048 1.22065 1.01787 0.99510 0.96878 1.21805 1.00961 0.98800 0.97946 1.22096 0.96597 1.00950 1.00707 0.91392 0.90882 0.91427 0.86411 0.86528 0.86547 0.90865 0.91449 0.91897 0.88698 0.87724 0.94189 0.94831 0.92649 0.89907 0.91213 0.92244 0.93518 0.91393 0.92754 0.92752 0.92335 0.92271 0.92749 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.19 36.01 0.33 -1.44 16 2 C -0.07 -1.03 5.88 -104.63 -0.62 -1.65 16 3 C -0.13 -1.82 9.70 -39.58 -0.38 -2.20 16 4 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 5 C -0.13 -1.76 9.70 -39.58 -0.38 -2.14 16 6 C -0.07 -1.00 5.88 -104.62 -0.62 -1.62 16 7 C -0.12 -1.46 9.60 36.01 0.35 -1.11 16 8 C -0.06 -0.92 4.38 -104.62 -0.46 -1.37 16 9 C -0.12 -1.82 3.11 -29.03 -0.09 -1.91 16 10 C 0.52 10.30 5.98 -10.99 -0.07 10.23 16 11 O -0.53 -13.13 15.60 5.55 0.09 -13.05 16 12 N -0.59 -11.64 2.00 -175.06 -0.35 -11.99 16 13 C 0.21 4.99 3.00 -5.20 -0.02 4.97 16 14 C -0.53 -14.91 9.94 -34.44 -0.34 -15.26 16 15 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 18 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 19 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 22 C 0.12 1.81 4.58 -4.04 -0.02 1.79 16 23 C -0.09 -1.11 0.85 -154.51 -0.13 -1.24 16 24 C -0.15 -2.10 6.98 37.15 0.26 -1.84 16 25 C -0.14 -1.40 8.47 37.16 0.31 -1.09 16 26 C -0.15 -1.69 6.35 37.16 0.24 -1.45 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 29 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.76 5.08 -51.93 -0.26 0.49 16 35 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.09 1.32 5.90 -51.93 -0.31 1.02 16 37 H 0.11 1.34 2.56 -51.93 -0.13 1.20 16 38 H 0.04 0.91 4.36 -51.93 -0.23 0.68 16 39 H 0.03 0.88 6.78 -51.93 -0.35 0.53 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 41 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 42 H 0.07 0.90 6.10 -51.93 -0.32 0.59 16 43 H 0.06 0.89 7.72 -51.93 -0.40 0.49 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.15 5.75 -51.93 -0.30 0.85 16 46 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 0.55 6.45 -51.93 -0.33 0.22 16 LS Contribution 384.23 15.07 5.79 5.79 Total: -1.00 -33.87 384.23 -8.87 -42.74 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.38 Total: 3.69 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.13 Total: -17.27 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.42 Total: -38.87 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.87 -8.87 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180568640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.453 kcal (2) G-P(sol) polarization free energy of solvation -33.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds