Wall clock time and date at job start Tue Mar 31 2020 11:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52994 * 110.01649 * 60.72879 * 3 2 1 5 5 N 1.46901 * 109.47409 * 55.22776 * 4 3 2 6 6 C 1.46896 * 111.00334 * 176.58244 * 5 4 3 7 7 H 1.09002 * 109.47008 * 325.00050 * 6 5 4 8 8 C 1.53001 * 109.47154 * 85.00226 * 6 5 4 9 9 C 1.50702 * 109.47325 * 205.00109 * 6 5 4 10 10 C 1.38299 * 119.92708 * 319.72816 * 9 6 5 11 11 C 1.38100 * 120.06456 * 179.72242 * 10 9 6 12 12 C 1.38881 * 119.92913 * 0.54982 * 11 10 9 13 13 O 1.35750 * 120.06537 * 179.74394 * 12 11 10 14 14 C 1.34837 * 116.99897 * 185.62457 * 13 12 11 15 15 H 1.07996 * 119.99751 * 2.72918 * 14 13 12 16 16 C 1.38654 * 119.99999 * 182.73150 * 14 13 12 17 17 N 1.31558 * 119.99931 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47064 * 89.99511 * 18 16 14 20 20 H 1.48502 * 109.46999 * 209.99905 * 18 16 14 21 21 H 1.48502 * 109.47015 * 329.99976 * 18 16 14 22 22 C 1.38876 * 119.86292 * 359.72397 * 12 11 10 23 23 C 1.38095 * 119.93385 * 0.02562 * 22 12 11 24 24 C 1.54269 * 110.03028 * 299.33805 * 3 2 1 25 25 C 1.54968 * 104.15581 * 217.13680 * 24 3 2 26 26 C 1.54893 * 102.77920 * 37.88939 * 25 24 3 27 27 C 1.53873 * 110.02867 * 182.11813 * 3 2 1 28 28 H 1.09005 * 109.46769 * 301.27060 * 1 2 3 29 29 H 1.08995 * 109.47431 * 61.27586 * 1 2 3 30 30 H 1.09004 * 109.47296 * 181.27499 * 1 2 3 31 31 H 1.09004 * 109.46743 * 239.99971 * 2 1 3 32 32 H 1.08999 * 109.46822 * 120.00329 * 2 1 3 33 33 H 1.09005 * 109.46949 * 175.22662 * 4 3 2 34 34 H 1.08996 * 109.47386 * 295.22774 * 4 3 2 35 35 H 1.00901 * 110.99816 * 52.62987 * 5 4 3 36 36 H 1.09004 * 109.46988 * 59.99576 * 8 6 5 37 37 H 1.08991 * 109.47437 * 180.02562 * 8 6 5 38 38 H 1.09005 * 109.46903 * 300.00452 * 8 6 5 39 39 H 1.07999 * 119.97255 * 0.02562 * 10 9 6 40 40 H 1.07999 * 120.03520 * 180.27403 * 11 10 9 41 41 H 0.97004 * 119.99321 * 180.02562 * 17 16 14 42 42 H 1.08009 * 120.03275 * 179.97438 * 22 12 11 43 43 H 1.08000 * 119.97037 * 180.02562 * 23 22 12 44 44 H 1.08994 * 110.48828 * 335.78208 * 24 3 2 45 45 H 1.08999 * 110.48526 * 98.43037 * 24 3 2 46 46 H 1.08999 * 110.72159 * 279.57418 * 25 24 3 47 47 H 1.09004 * 110.92166 * 156.29537 * 25 24 3 48 48 H 1.08996 * 110.48411 * 203.40470 * 26 25 24 49 49 H 1.08997 * 110.48336 * 80.76147 * 26 25 24 50 50 H 1.08994 * 110.03468 * 238.56123 * 27 3 2 51 51 H 1.08992 * 110.03679 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5519 2.1705 1.2540 5 7 1.9592 1.4171 2.4475 6 6 1.5777 2.1285 3.6748 7 1 1.6683 3.2029 3.5151 8 6 0.1302 1.7864 4.0335 9 6 2.4868 1.7097 4.8014 10 6 2.8618 0.3847 4.9293 11 6 3.6994 -0.0012 5.9572 12 6 4.1560 0.9409 6.8698 13 8 4.9752 0.5637 7.8843 14 6 5.2873 1.5026 8.8004 15 1 4.8543 2.4895 8.7312 16 6 6.1643 1.2010 9.8312 17 7 6.6914 -0.0014 9.9157 18 14 6.5961 2.5015 11.1007 19 1 5.6348 2.4292 12.2301 20 1 7.9721 2.2628 11.6056 21 1 6.5247 3.8466 10.4754 22 6 3.7730 2.2697 6.7419 23 6 2.9394 2.6502 5.7088 24 6 1.5466 2.1774 -1.2635 25 6 2.7356 3.0884 -1.6607 26 6 3.9662 2.2012 -1.3482 27 6 3.5777 1.4578 -0.0534 28 1 -0.3633 0.5335 0.8784 29 1 -0.3634 0.4939 -0.9011 30 1 -0.3634 -1.0274 0.0229 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9886 3.1687 1.2878 34 1 0.4651 2.2501 1.2281 35 1 2.9498 1.2258 2.4336 36 1 0.0397 0.7119 4.1932 37 1 -0.1530 2.3145 4.9439 38 1 -0.5273 2.0892 3.2186 39 1 2.5032 -0.3482 4.2217 40 1 3.9954 -1.0353 6.0541 41 1 7.3046 -0.2124 10.6371 42 1 4.1262 3.0046 7.4502 43 1 2.6416 3.6835 5.6085 44 1 1.3299 1.4647 -2.0592 45 1 0.6650 2.7768 -1.0363 46 1 2.7477 3.9935 -1.0534 47 1 2.6980 3.3371 -2.7213 48 1 4.8494 2.8184 -1.1834 49 1 4.1407 1.4923 -2.1575 50 1 3.9762 1.9848 0.8134 51 1 3.9606 0.4378 -0.0798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181899186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:22 Heat of formation + Delta-G solvation = -31.464475 kcal Electronic energy + Delta-G solvation = -26808.425338 eV Core-core repulsion = 23285.974310 eV Total energy + Delta-G solvation = -3522.451028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.82364 -39.04875 -37.25762 -35.20804 -33.29301 -32.25902 -30.74178 -30.13114 -28.93356 -27.98029 -27.66393 -25.41225 -24.54944 -22.83397 -22.23358 -21.68856 -20.85911 -19.84631 -18.49723 -17.91983 -17.01590 -16.13588 -15.63532 -15.47454 -15.00579 -14.54863 -14.51402 -14.10283 -14.06426 -13.74796 -13.49602 -13.39727 -13.31746 -12.86168 -12.67414 -12.45955 -12.38642 -12.20373 -12.06982 -11.71505 -11.65621 -11.45281 -11.27247 -11.25969 -11.19210 -11.11782 -10.79025 -10.68197 -10.65169 -10.55363 -10.44079 -10.39113 -10.32449 -10.12775 -9.35101 -8.82363 -8.27107 -8.15577 -7.16757 -6.45218 -4.03742 2.23792 2.31968 3.12468 3.12934 3.17753 3.96394 4.16159 4.39689 4.46834 4.57040 4.65962 5.00135 5.08463 5.10369 5.14935 5.19071 5.24172 5.31987 5.32330 5.46239 5.48814 5.53142 5.54342 5.61343 5.67084 5.70498 5.71303 5.72812 5.74028 5.84383 5.90038 5.91715 5.99965 6.03729 6.05719 6.12011 6.14788 6.21759 6.25488 6.34953 6.40302 6.44931 6.50436 6.74626 6.89218 7.05826 7.10804 7.28227 7.44302 7.46547 7.60177 7.84750 7.99892 9.00565 9.71184 10.72935 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002502 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.026056 B =11187.152784 C =11496.441260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.059 4.059 4 C 0.071 3.929 5 N -0.679 5.679 6 C 0.143 3.857 7 H 0.038 0.962 8 C -0.130 4.130 9 C -0.191 4.191 10 C -0.055 4.055 11 C -0.195 4.195 12 C 0.155 3.845 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.268 1.268 22 C -0.235 4.235 23 C -0.066 4.066 24 C -0.112 4.112 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.119 4.119 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.344 0.656 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 4.627 -20.549 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 C -0.059 4.059 4 C -0.058 4.058 5 N -0.312 5.312 6 C 0.034 3.966 7 H 0.056 0.944 8 C -0.188 4.188 9 C -0.193 4.193 10 C -0.073 4.073 11 C -0.215 4.215 12 C 0.101 3.899 13 O -0.082 6.082 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.202 1.202 21 H -0.192 1.192 22 C -0.254 4.254 23 C -0.085 4.085 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.162 4.162 27 C -0.157 4.157 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.163 0.837 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.478 3.885 -20.318 23.188 hybrid contribution 0.915 1.508 0.742 1.914 sum -9.562 5.393 -19.575 22.444 Atomic orbital electron populations 1.21780 0.96248 1.01116 1.01499 1.21484 0.95711 0.94895 1.01740 1.21238 0.94626 0.95916 0.94108 1.22093 1.00280 0.94080 0.89345 1.60637 1.22731 1.47200 1.00617 1.20133 0.94226 0.94705 0.87585 0.94415 1.21758 0.94827 1.02299 0.99960 1.19280 1.05603 0.94237 1.00136 1.20485 0.95647 0.94990 0.96186 1.20250 1.04563 0.98734 0.97927 1.19416 0.89746 0.92231 0.88478 1.83983 1.55372 1.38371 1.30436 1.21316 1.27642 0.93681 1.04131 0.89137 1.25279 0.95767 0.97555 0.97929 1.70042 1.28735 1.19254 1.31761 0.85722 0.78225 0.79617 0.79926 1.19871 1.20248 1.19239 1.21115 1.05543 0.96463 1.02282 1.20584 0.96127 0.97675 0.94090 1.22458 0.97635 0.98041 0.96884 1.22517 0.95101 0.98181 1.00598 1.22343 0.97755 0.98402 0.97656 1.22289 0.94888 1.00784 0.97704 0.92015 0.93581 0.93430 0.93115 0.90553 0.95726 0.91102 0.83654 0.92013 0.92873 0.93679 0.86302 0.86637 0.92029 0.85698 0.87894 0.91450 0.91825 0.91762 0.91955 0.91973 0.91861 0.91914 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.37 37.16 0.35 -0.96 16 2 C -0.10 -0.92 4.41 -26.73 -0.12 -1.04 16 3 C -0.06 -0.52 0.49 -153.39 -0.07 -0.59 16 4 C 0.07 0.72 3.69 -3.83 -0.01 0.70 16 5 N -0.68 -7.95 4.78 -107.95 -0.52 -8.47 16 6 C 0.14 1.90 2.81 -68.87 -0.19 1.70 16 7 H 0.04 0.51 7.60 -51.93 -0.39 0.11 16 8 C -0.13 -1.63 9.39 37.16 0.35 -1.28 16 9 C -0.19 -3.18 4.71 -104.57 -0.49 -3.67 16 10 C -0.05 -0.96 9.00 -39.61 -0.36 -1.32 16 11 C -0.20 -4.11 9.99 -39.39 -0.39 -4.51 16 12 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 13 O -0.18 -5.11 9.76 0.03 0.00 -5.11 16 14 C -0.39 -10.97 9.47 30.89 0.29 -10.68 16 15 H 0.09 2.35 5.25 -52.49 -0.28 2.08 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 18 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 C -0.23 -5.09 9.14 -39.40 -0.36 -5.45 16 23 C -0.07 -1.20 9.66 -39.61 -0.38 -1.58 16 24 C -0.11 -0.88 4.84 -25.03 -0.12 -1.01 16 25 C -0.13 -0.98 6.91 -24.69 -0.17 -1.15 16 26 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 27 C -0.12 -1.10 5.55 -25.61 -0.14 -1.24 16 28 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 29 H 0.05 0.36 7.17 -51.93 -0.37 -0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.80 7.49 -51.93 -0.39 0.42 16 33 H 0.02 0.27 7.97 -51.93 -0.41 -0.15 16 34 H 0.07 0.71 6.07 -51.93 -0.32 0.40 16 35 H 0.34 4.31 6.58 -39.29 -0.26 4.05 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.50 7.52 -51.93 -0.39 0.11 16 39 H 0.12 1.85 7.72 -52.49 -0.41 1.45 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 2.74 5.69 -52.48 -0.30 2.44 16 43 H 0.10 1.63 8.03 -52.49 -0.42 1.21 16 44 H 0.07 0.51 7.65 -51.93 -0.40 0.12 16 45 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.65 6.90 -51.93 -0.36 0.29 16 51 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 LS Contribution 392.68 15.07 5.92 5.92 Total: -1.00 -28.88 392.68 -10.00 -38.88 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.77 Total: 6.67 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -2.36 Total: -28.80 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.24 Total: -33.11 kcal Atomic # 8 Polarization: -5.11 SS G_CDS: 0.00 Total: -5.11 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.88 -10.00 -38.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181899186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.414 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds