Wall clock time and date at job start Tue Mar 31 2020 11:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 C 1.52994 * 110.01649 * 60.72879 * 3 2 1 5 5 N 1.46901 * 109.47409 * 55.22776 * 4 3 2 6 6 C 1.46896 * 111.00334 * 176.58244 * 5 4 3 7 7 H 1.09002 * 109.47008 * 325.00050 * 6 5 4 8 8 C 1.53001 * 109.47154 * 85.00226 * 6 5 4 9 9 C 1.50702 * 109.47325 * 205.00109 * 6 5 4 10 10 C 1.38299 * 119.92708 * 319.72816 * 9 6 5 11 11 C 1.38100 * 120.06456 * 179.72242 * 10 9 6 12 12 C 1.38881 * 119.92913 * 0.54982 * 11 10 9 13 13 O 1.35750 * 120.06537 * 179.74394 * 12 11 10 14 14 C 1.34837 * 116.99897 * 185.62457 * 13 12 11 15 15 H 1.07996 * 119.99751 * 2.72918 * 14 13 12 16 16 C 1.38654 * 119.99999 * 182.73150 * 14 13 12 17 17 N 1.31558 * 119.99931 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99897 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47064 * 89.99511 * 18 16 14 20 20 H 1.48502 * 109.46999 * 209.99905 * 18 16 14 21 21 H 1.48502 * 109.47015 * 329.99976 * 18 16 14 22 22 C 1.38876 * 119.86292 * 359.72397 * 12 11 10 23 23 C 1.38095 * 119.93385 * 0.02562 * 22 12 11 24 24 C 1.54269 * 110.03028 * 299.33805 * 3 2 1 25 25 C 1.54968 * 104.15581 * 217.13680 * 24 3 2 26 26 C 1.54893 * 102.77920 * 37.88939 * 25 24 3 27 27 C 1.53873 * 110.02867 * 182.11813 * 3 2 1 28 28 H 1.09005 * 109.46769 * 301.27060 * 1 2 3 29 29 H 1.08995 * 109.47431 * 61.27586 * 1 2 3 30 30 H 1.09004 * 109.47296 * 181.27499 * 1 2 3 31 31 H 1.09004 * 109.46743 * 239.99971 * 2 1 3 32 32 H 1.08999 * 109.46822 * 120.00329 * 2 1 3 33 33 H 1.09005 * 109.46949 * 175.22662 * 4 3 2 34 34 H 1.08996 * 109.47386 * 295.22774 * 4 3 2 35 35 H 1.00901 * 110.99816 * 52.62987 * 5 4 3 36 36 H 1.09004 * 109.46988 * 59.99576 * 8 6 5 37 37 H 1.08991 * 109.47437 * 180.02562 * 8 6 5 38 38 H 1.09005 * 109.46903 * 300.00452 * 8 6 5 39 39 H 1.07999 * 119.97255 * 0.02562 * 10 9 6 40 40 H 1.07999 * 120.03520 * 180.27403 * 11 10 9 41 41 H 0.97004 * 119.99321 * 180.02562 * 17 16 14 42 42 H 1.08009 * 120.03275 * 179.97438 * 22 12 11 43 43 H 1.08000 * 119.97037 * 180.02562 * 23 22 12 44 44 H 1.08994 * 110.48828 * 335.78208 * 24 3 2 45 45 H 1.08999 * 110.48526 * 98.43037 * 24 3 2 46 46 H 1.08999 * 110.72159 * 279.57418 * 25 24 3 47 47 H 1.09004 * 110.92166 * 156.29537 * 25 24 3 48 48 H 1.08996 * 110.48411 * 203.40470 * 26 25 24 49 49 H 1.08997 * 110.48336 * 80.76147 * 26 25 24 50 50 H 1.08994 * 110.03468 * 238.56123 * 27 3 2 51 51 H 1.08992 * 110.03679 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5519 2.1705 1.2540 5 7 1.9592 1.4171 2.4475 6 6 1.5777 2.1285 3.6748 7 1 1.6683 3.2029 3.5151 8 6 0.1302 1.7864 4.0335 9 6 2.4868 1.7097 4.8014 10 6 2.8618 0.3847 4.9293 11 6 3.6994 -0.0012 5.9572 12 6 4.1560 0.9409 6.8698 13 8 4.9752 0.5637 7.8843 14 6 5.2873 1.5026 8.8004 15 1 4.8543 2.4895 8.7312 16 6 6.1643 1.2010 9.8312 17 7 6.6914 -0.0014 9.9157 18 14 6.5961 2.5015 11.1007 19 1 5.6348 2.4292 12.2301 20 1 7.9721 2.2628 11.6056 21 1 6.5247 3.8466 10.4754 22 6 3.7730 2.2697 6.7419 23 6 2.9394 2.6502 5.7088 24 6 1.5466 2.1774 -1.2635 25 6 2.7356 3.0884 -1.6607 26 6 3.9662 2.2012 -1.3482 27 6 3.5777 1.4578 -0.0534 28 1 -0.3633 0.5335 0.8784 29 1 -0.3634 0.4939 -0.9011 30 1 -0.3634 -1.0274 0.0229 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.9886 3.1687 1.2878 34 1 0.4651 2.2501 1.2281 35 1 2.9498 1.2258 2.4336 36 1 0.0397 0.7119 4.1932 37 1 -0.1530 2.3145 4.9439 38 1 -0.5273 2.0892 3.2186 39 1 2.5032 -0.3482 4.2217 40 1 3.9954 -1.0353 6.0541 41 1 7.3046 -0.2124 10.6371 42 1 4.1262 3.0046 7.4502 43 1 2.6416 3.6835 5.6085 44 1 1.3299 1.4647 -2.0592 45 1 0.6650 2.7768 -1.0363 46 1 2.7477 3.9935 -1.0534 47 1 2.6980 3.3371 -2.7213 48 1 4.8494 2.8184 -1.1834 49 1 4.1407 1.4923 -2.1575 50 1 3.9762 1.9848 0.8134 51 1 3.9606 0.4378 -0.0798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181899186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:21 Heat of formation + Delta-G solvation = -45.654897 kcal Electronic energy + Delta-G solvation = -26809.040680 eV Core-core repulsion = 23285.974310 eV Total energy + Delta-G solvation = -3523.066370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.95588 -40.38290 -38.79489 -36.46711 -34.34633 -33.96438 -31.95323 -31.63348 -29.66813 -29.34077 -28.46438 -27.36556 -25.47733 -23.84333 -23.53470 -23.09231 -21.60150 -21.16244 -19.75877 -19.27043 -18.80823 -17.20320 -16.65121 -16.42223 -16.26763 -16.09085 -15.63696 -15.53015 -15.35315 -15.22822 -14.74169 -14.42862 -14.36935 -14.11391 -13.98944 -13.72128 -13.52039 -13.31606 -13.19177 -12.97741 -12.84577 -12.65953 -12.51411 -12.31571 -12.19494 -12.12515 -11.97292 -11.92070 -11.79067 -11.61875 -11.36242 -11.21487 -11.20288 -11.10134 -11.00409 -10.78265 -9.77052 -9.23420 -8.90677 -8.47732 -6.15527 0.60503 0.69243 1.34094 1.43534 1.51560 2.17092 2.81306 3.15105 3.28121 3.51781 3.70373 3.78504 3.89166 3.92244 4.11191 4.23484 4.33456 4.39250 4.41667 4.50299 4.52640 4.60651 4.61654 4.69823 4.76284 4.79066 4.80598 4.85102 4.86976 4.96140 5.00433 5.03053 5.07297 5.09393 5.13685 5.15321 5.17240 5.25441 5.29911 5.34785 5.42655 5.47967 5.49820 5.51114 5.59178 5.62537 5.71290 5.71942 5.76000 6.02542 6.21771 6.30172 6.53698 6.97141 7.78564 8.75749 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021401 B = 0.002502 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.026056 B =11187.152784 C =11496.441260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.054 4.054 4 C 0.075 3.925 5 N -0.678 5.678 6 C 0.147 3.853 7 H 0.049 0.951 8 C -0.127 4.127 9 C -0.163 4.163 10 C -0.044 4.044 11 C -0.205 4.205 12 C 0.114 3.886 13 O -0.233 6.233 14 C -0.413 4.413 15 H 0.100 0.900 16 C -0.023 4.023 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.242 4.242 23 C -0.065 4.065 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.120 4.120 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.077 0.923 35 H 0.339 0.661 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.145 0.855 40 H 0.110 0.890 41 H 0.273 0.727 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.073 0.927 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.049 0.951 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.262 6.624 -22.854 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.054 4.054 4 C -0.054 4.054 5 N -0.310 5.310 6 C 0.037 3.963 7 H 0.067 0.933 8 C -0.185 4.185 9 C -0.164 4.164 10 C -0.062 4.062 11 C -0.225 4.225 12 C 0.064 3.936 13 O -0.140 6.140 14 C -0.489 4.489 15 H 0.118 0.882 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.262 4.262 23 C -0.083 4.083 24 C -0.146 4.146 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.158 4.158 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.163 0.837 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.154 0.846 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.068 0.932 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.587 5.897 -22.678 26.599 hybrid contribution 1.347 0.881 1.124 1.963 sum -11.239 6.778 -21.555 25.236 Atomic orbital electron populations 1.21743 0.95720 1.01150 1.01660 1.21441 0.96085 0.94858 1.01188 1.21191 0.94223 0.95794 0.94183 1.22117 1.00588 0.93804 0.88892 1.60659 1.22423 1.47244 1.00645 1.20151 0.93901 0.95412 0.86819 0.93339 1.21720 0.94192 1.01824 1.00773 1.19763 1.03457 0.93344 0.99792 1.20745 0.94101 0.96207 0.95141 1.20480 1.05209 0.98327 0.98450 1.19936 0.90651 0.94100 0.88897 1.83945 1.58133 1.39564 1.32341 1.21803 1.28134 0.94159 1.04796 0.88220 1.26583 0.95341 1.00092 1.00060 1.70189 1.30543 1.21905 1.33336 0.84596 0.78132 0.76795 0.76745 1.18808 1.19549 1.17661 1.21205 1.06313 0.95324 1.03313 1.20929 0.94837 0.99697 0.92880 1.22439 0.97805 0.98083 0.96315 1.22514 0.94613 0.97832 1.01257 1.22349 0.98037 0.98528 0.97251 1.22286 0.95257 1.00493 0.97778 0.92680 0.92543 0.93492 0.92740 0.92093 0.95931 0.90434 0.84150 0.92769 0.92936 0.91643 0.83703 0.87137 0.91844 0.86546 0.84600 0.90870 0.91235 0.92103 0.90870 0.92187 0.91322 0.93181 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.37 71.98 0.67 -1.47 16 2 C -0.10 -1.57 4.41 30.59 0.14 -1.43 16 3 C -0.05 -0.81 0.49 -51.46 -0.03 -0.84 16 4 C 0.07 1.28 3.69 86.30 0.32 1.59 16 5 N -0.68 -13.90 4.78 -495.46 -2.37 -16.27 16 6 C 0.15 3.39 2.81 44.17 0.12 3.51 16 7 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 8 C -0.13 -2.71 9.39 71.98 0.68 -2.03 16 9 C -0.16 -5.00 4.71 -19.83 -0.09 -5.09 16 10 C -0.04 -1.48 9.00 22.25 0.20 -1.28 16 11 C -0.21 -8.85 9.99 22.39 0.22 -8.63 16 12 C 0.11 5.76 6.65 22.58 0.15 5.91 16 13 O -0.23 -14.22 9.76 -22.81 -0.22 -14.44 16 14 C -0.41 -24.31 9.47 67.92 0.64 -23.67 16 15 H 0.10 5.40 5.25 -2.91 -0.02 5.38 16 16 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 17 N -0.92 -57.14 13.67 21.61 0.30 -56.85 16 18 Si 1.02 43.20 29.55 68.60 2.03 45.22 16 19 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 22 C -0.24 -10.63 9.14 22.39 0.20 -10.42 16 23 C -0.06 -2.24 9.66 22.25 0.21 -2.02 16 24 C -0.11 -1.38 4.84 31.70 0.15 -1.23 16 25 C -0.12 -1.60 6.91 31.91 0.22 -1.38 16 26 C -0.12 -1.80 6.83 31.67 0.22 -1.59 16 27 C -0.12 -2.02 5.55 31.32 0.17 -1.84 16 28 H 0.05 0.89 6.54 -2.38 -0.02 0.87 16 29 H 0.06 0.72 7.17 -2.39 -0.02 0.70 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.17 7.49 -2.39 -0.02 1.15 16 33 H 0.02 0.41 7.97 -2.38 -0.02 0.39 16 34 H 0.08 1.26 6.07 -2.39 -0.01 1.25 16 35 H 0.34 7.69 6.58 -89.69 -0.59 7.10 16 36 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.06 1.17 7.52 -2.38 -0.02 1.15 16 39 H 0.15 4.18 7.72 -2.91 -0.02 4.15 16 40 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.12 5.23 5.69 -2.91 -0.02 5.21 16 43 H 0.14 3.81 8.03 -2.91 -0.02 3.79 16 44 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 45 H 0.07 0.83 7.82 -2.39 -0.02 0.81 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 50 H 0.05 0.96 6.90 -2.39 -0.02 0.94 16 51 H 0.06 1.10 7.67 -2.39 -0.02 1.08 16 Total: -1.00 -66.80 392.68 4.72 -62.08 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.31 Total: 33.05 kcal Atomic # 6 Polarization: -57.46 SS G_CDS: 4.68 Total: -52.79 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -2.07 Total: -73.11 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.22 Total: -14.44 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -66.80 4.72 -62.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181899186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.421 kcal (2) G-P(sol) polarization free energy of solvation -66.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds