Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47235 * 2 1 4 4 C 1.52995 * 109.47216 * 184.81201 * 3 2 1 5 5 C 1.52999 * 112.85104 * 55.36545 * 4 3 2 6 6 N 1.46900 * 109.47145 * 53.82542 * 5 4 3 7 7 C 1.46897 * 110.99816 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47627 * 325.00293 * 7 6 5 9 9 C 1.53000 * 109.46961 * 85.00283 * 7 6 5 10 10 C 1.50704 * 109.47169 * 204.99596 * 7 6 5 11 11 C 1.38300 * 119.92868 * 319.73466 * 10 7 6 12 12 C 1.38102 * 120.06344 * 179.72067 * 11 10 7 13 13 C 1.38875 * 119.93471 * 0.54654 * 12 11 10 14 14 O 1.35749 * 120.07139 * 179.74651 * 13 12 11 15 15 C 1.34835 * 117.00149 * 174.34115 * 14 13 12 16 16 H 1.08003 * 119.99232 * 5.06653 * 15 14 13 17 17 C 1.38646 * 119.99802 * 185.06582 * 15 14 13 18 18 N 1.31554 * 120.00519 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99701 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47137 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46750 * 119.99902 * 19 17 15 22 22 H 1.48496 * 109.47363 * 240.00360 * 19 17 15 23 23 C 1.38878 * 119.85959 * 359.72743 * 13 12 11 24 24 C 1.38104 * 119.93285 * 359.97438 * 23 13 12 25 25 C 1.53787 * 113.69302 * 186.63774 * 4 3 2 26 26 C 1.53776 * 87.08186 * 89.12203 * 25 4 3 27 27 C 1.53783 * 87.08218 * 25.43766 * 26 25 4 28 28 H 1.09004 * 109.46579 * 60.00419 * 1 2 3 29 29 H 1.09003 * 109.46829 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47108 * 300.00661 * 1 2 3 31 31 H 1.09000 * 109.47457 * 239.99746 * 2 1 3 32 32 H 1.09004 * 109.46579 * 119.99581 * 2 1 3 33 33 H 1.09000 * 109.47454 * 64.80840 * 3 2 1 34 34 H 1.08995 * 109.46901 * 304.81195 * 3 2 1 35 35 H 1.09004 * 109.47101 * 293.82522 * 5 4 3 36 36 H 1.09003 * 109.47392 * 173.82962 * 5 4 3 37 37 H 1.00896 * 110.99974 * 56.04874 * 6 5 4 38 38 H 1.09004 * 109.47187 * 179.97438 * 9 7 6 39 39 H 1.09001 * 109.47370 * 299.99674 * 9 7 6 40 40 H 1.08996 * 109.47607 * 59.99921 * 9 7 6 41 41 H 1.07996 * 119.96923 * 359.97438 * 11 10 7 42 42 H 1.08004 * 120.02985 * 180.26728 * 12 11 10 43 43 H 0.97003 * 120.00238 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.03718 * 179.97438 * 23 13 12 45 45 H 1.07999 * 119.96858 * 180.02562 * 24 23 13 46 46 H 1.08998 * 113.61333 * 203.67504 * 25 4 3 47 47 H 1.09005 * 113.60855 * 334.57424 * 25 4 3 48 48 H 1.08999 * 113.61813 * 270.88432 * 26 25 4 49 49 H 1.09004 * 113.68356 * 139.99285 * 26 25 4 50 50 H 1.09001 * 113.61257 * 220.01964 * 27 26 25 51 51 H 1.08999 * 113.69398 * 89.12603 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5652 1.4442 -0.1210 5 6 4.0649 0.6763 -1.3464 6 7 3.4037 1.1939 -2.5517 7 6 3.8605 0.4789 -3.7509 8 1 4.9135 0.2200 -3.6406 9 6 3.0371 -0.7985 -3.9276 10 6 3.6841 1.3614 -4.9597 11 6 2.5502 2.1435 -5.0835 12 6 2.3883 2.9575 -6.1873 13 6 3.3602 2.9817 -7.1790 14 8 3.2015 3.7770 -8.2676 15 6 4.2330 3.8424 -9.1335 16 1 5.1002 3.2152 -8.9886 17 6 4.1802 4.7149 -10.2098 18 7 3.1241 5.4792 -10.3860 19 14 5.6096 4.8060 -11.4091 20 1 6.6680 3.8519 -10.9911 21 1 5.1358 4.4533 -12.7715 22 1 6.1610 6.1848 -11.4182 23 6 4.4950 2.1909 -7.0545 24 6 4.6540 1.3836 -5.9453 25 6 4.1957 2.8386 0.0314 26 6 4.2626 2.5568 1.5417 27 6 4.2870 1.0619 1.1820 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8898 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.7488 1.9309 0.9299 34 1 1.6081 1.9806 -0.8437 35 1 3.8330 -0.3825 -1.2311 36 1 5.1433 0.8038 -1.4403 37 1 3.5503 2.1877 -2.6460 38 1 3.3758 -1.3289 -4.8176 39 1 3.1647 -1.4369 -3.0533 40 1 1.9841 -0.5397 -4.0380 41 1 1.7925 2.1207 -4.3142 42 1 1.5046 3.5713 -6.2813 43 1 3.0874 6.0898 -11.1388 44 1 5.2524 2.2072 -7.8242 45 1 5.5365 0.7686 -5.8477 46 1 5.1744 2.9291 -0.4397 47 1 3.5213 3.6537 -0.2312 48 1 3.3668 2.8612 2.0828 49 1 5.1811 2.9077 2.0123 50 1 3.6864 0.4426 1.8483 51 1 5.2902 0.6653 1.0254 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182015056.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = -20.144076 kcal Electronic energy + Delta-G solvation = -26654.216552 eV Core-core repulsion = 23132.256414 eV Total energy + Delta-G solvation = -3521.960138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00860 -40.63538 -38.86463 -36.51582 -34.84452 -34.26699 -32.19784 -31.73584 -29.41664 -28.72549 -27.36989 -26.71902 -26.37727 -23.93005 -23.67789 -22.85367 -21.91285 -21.26236 -19.75186 -18.96115 -18.77890 -17.31783 -16.62645 -16.33223 -16.24862 -16.14306 -15.62926 -15.55257 -15.41823 -15.11752 -14.85096 -14.42523 -14.25688 -14.19612 -13.99113 -13.65472 -13.52919 -13.50720 -13.12323 -12.97548 -12.89034 -12.73317 -12.52159 -12.35868 -12.30759 -12.21981 -12.10970 -12.09325 -11.75620 -11.62519 -11.45414 -11.17527 -11.06321 -10.81433 -10.77655 -10.66083 -9.76456 -9.23125 -8.89974 -8.47547 -6.15638 0.61093 0.69854 1.34219 1.42555 1.52475 2.17022 2.81757 3.14483 3.26738 3.53071 3.70698 3.79457 3.92424 3.93254 4.04275 4.11768 4.23696 4.24683 4.41512 4.43282 4.49727 4.56391 4.61556 4.65140 4.76619 4.78116 4.82514 4.89748 4.90692 4.97990 5.00037 5.03603 5.08778 5.10918 5.12949 5.14846 5.16439 5.20718 5.26922 5.31040 5.38494 5.45258 5.49405 5.59042 5.65010 5.68273 5.71286 5.72257 5.76250 6.03159 6.22477 6.31206 6.55425 6.97414 7.79051 8.76054 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020392 B = 0.002484 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.731922 B =11269.095180 C =11538.020295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.078 4.078 4 C -0.072 4.072 5 C 0.077 3.923 6 N -0.675 5.675 7 C 0.147 3.853 8 H 0.049 0.951 9 C -0.127 4.127 10 C -0.162 4.162 11 C -0.043 4.043 12 C -0.206 4.206 13 C 0.114 3.886 14 O -0.234 6.234 15 C -0.412 4.412 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.252 1.252 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.242 4.242 24 C -0.065 4.065 25 C -0.141 4.141 26 C -0.137 4.137 27 C -0.127 4.127 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.340 0.660 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.145 0.855 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.117 0.883 45 H 0.136 0.864 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.072 0.928 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.513 -11.931 23.671 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.115 4.115 4 C -0.072 4.072 5 C -0.052 4.052 6 N -0.306 5.306 7 C 0.038 3.962 8 H 0.067 0.933 9 C -0.185 4.185 10 C -0.163 4.163 11 C -0.061 4.061 12 C -0.225 4.225 13 C 0.064 3.936 14 O -0.141 6.141 15 C -0.488 4.488 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.175 1.175 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.262 4.262 24 C -0.083 4.083 25 C -0.179 4.179 26 C -0.174 4.174 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.158 0.842 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.163 0.837 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.154 0.846 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.091 0.909 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.690 -12.050 23.548 26.506 hybrid contribution 1.245 0.904 -1.229 1.969 sum 2.935 -11.146 22.320 25.120 Atomic orbital electron populations 1.21743 0.96276 1.01381 1.01349 1.21433 0.95328 0.96766 1.01726 1.21147 0.92218 0.97108 1.01040 1.21843 0.95772 0.95511 0.94096 1.21982 0.94723 0.99546 0.88914 1.60590 1.60622 1.08233 1.01195 1.20141 0.97093 0.92731 0.86280 0.93320 1.21719 1.00135 0.95536 1.01104 1.19762 0.95848 1.02371 0.98280 1.20742 0.97180 0.93066 0.95150 1.20486 1.00131 1.06257 0.95618 1.19938 0.94992 0.90962 0.87699 1.83945 1.41120 1.59326 1.29662 1.21844 0.97389 1.24242 1.05350 0.88199 1.26581 1.01516 0.94482 0.99509 1.70190 1.30594 1.24278 1.30916 0.84535 0.76011 0.79037 0.76654 1.17507 1.19310 1.19322 1.21203 0.99745 1.03273 1.01941 1.20932 0.98705 0.96468 0.92242 1.23030 1.00508 0.97109 0.97216 1.22774 1.02143 0.96633 0.95868 1.22949 1.00576 0.96583 0.96346 0.93489 0.92806 0.92873 0.91842 0.92277 0.92527 0.92129 0.90556 0.95771 0.84216 0.92968 0.91654 0.92796 0.83705 0.87192 0.91852 0.86570 0.84591 0.90896 0.92085 0.89969 0.91406 0.90895 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -1.72 5.57 30.60 0.17 -1.55 16 3 C -0.08 -1.22 4.29 30.59 0.13 -1.09 16 4 C -0.07 -1.08 0.68 -51.65 -0.03 -1.11 16 5 C 0.08 1.29 4.20 86.30 0.36 1.66 16 6 N -0.68 -13.62 5.05 -495.45 -2.50 -16.12 16 7 C 0.15 3.35 2.81 44.17 0.12 3.47 16 8 H 0.05 1.07 7.66 -2.39 -0.02 1.05 16 9 C -0.13 -2.68 9.39 71.98 0.68 -2.00 16 10 C -0.16 -4.93 4.71 -19.83 -0.09 -5.02 16 11 C -0.04 -1.45 9.00 22.25 0.20 -1.25 16 12 C -0.21 -8.85 9.99 22.39 0.22 -8.63 16 13 C 0.11 5.75 6.65 22.58 0.15 5.90 16 14 O -0.23 -14.25 9.76 -22.78 -0.22 -14.48 16 15 C -0.41 -24.26 9.49 67.92 0.64 -23.61 16 16 H 0.10 5.42 5.20 -2.91 -0.02 5.40 16 17 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 18 N -0.92 -57.11 13.67 21.61 0.30 -56.82 16 19 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 20 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 C -0.24 -10.61 9.17 22.39 0.21 -10.40 16 24 C -0.07 -2.23 9.66 22.25 0.21 -2.01 16 25 C -0.14 -2.25 7.03 31.12 0.22 -2.03 16 26 C -0.14 -1.82 7.73 31.12 0.24 -1.58 16 27 C -0.13 -1.63 7.13 31.12 0.22 -1.40 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 1.07 6.51 -2.39 -0.02 1.05 16 32 H 0.06 0.79 7.57 -2.39 -0.02 0.78 16 33 H 0.06 0.85 7.31 -2.39 -0.02 0.83 16 34 H 0.06 1.15 7.84 -2.39 -0.02 1.13 16 35 H 0.08 1.23 6.23 -2.39 -0.01 1.22 16 36 H 0.02 0.42 7.96 -2.39 -0.02 0.40 16 37 H 0.34 7.61 7.81 -89.70 -0.70 6.91 16 38 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.15 7.45 -2.39 -0.02 1.14 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.15 4.16 7.72 -2.91 -0.02 4.14 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 45 H 0.14 3.79 8.03 -2.91 -0.02 3.76 16 46 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 47 H 0.06 1.06 8.10 -2.38 -0.02 1.04 16 48 H 0.08 1.04 7.61 -2.39 -0.02 1.02 16 49 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.07 0.86 7.52 -2.39 -0.02 0.85 16 51 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -66.66 399.79 4.63 -62.03 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.20 Total: 33.24 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.84 Total: -53.10 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -2.21 Total: -72.94 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.22 Total: -14.48 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -66.66 4.63 -62.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182015056.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.881 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds