Wall clock time and date at job start Tue Mar 31 2020 11:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 112.84973 * 2 1 4 4 C 1.53777 * 113.61525 * 131.20009 * 2 1 3 5 5 H 1.08996 * 113.61480 * 25.34556 * 4 2 1 6 6 N 1.46907 * 113.61192 * 254.52535 * 4 2 1 7 7 C 1.46902 * 110.99665 * 156.52793 * 6 4 2 8 8 C 1.53001 * 109.46901 * 179.97438 * 7 6 4 9 9 C 1.53000 * 109.46886 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99751 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00094 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99955 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47116 * 59.99536 * 14 12 10 16 16 H 1.48500 * 109.46585 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46730 * 299.99515 * 14 12 10 18 18 C 1.53787 * 87.17417 * 139.93714 * 4 2 1 19 19 C 1.53780 * 113.61100 * 228.69835 * 2 1 3 20 20 H 1.09004 * 113.61537 * 334.56070 * 19 2 1 21 21 O 1.42894 * 113.61846 * 105.38613 * 19 2 1 22 22 C 1.42906 * 114.00256 * 210.00093 * 21 19 2 23 23 C 1.50696 * 109.46945 * 179.97438 * 22 21 19 24 24 C 1.38237 * 119.99841 * 269.72294 * 23 22 21 25 25 C 1.38235 * 119.99741 * 179.81522 * 24 23 22 26 26 C 1.38236 * 120.00063 * 0.41810 * 25 24 23 27 27 C 1.38232 * 120.00072 * 359.81176 * 26 25 24 28 28 C 1.38236 * 120.00076 * 0.02562 * 27 26 25 29 29 H 1.09004 * 109.46569 * 288.80225 * 1 2 3 30 30 H 1.08994 * 109.47258 * 48.79944 * 1 2 3 31 31 H 1.08994 * 109.47126 * 168.80317 * 1 2 3 32 32 H 1.09001 * 109.47451 * 191.20260 * 3 2 1 33 33 H 1.09003 * 109.47118 * 311.20075 * 3 2 1 34 34 H 1.09003 * 109.47325 * 71.19874 * 3 2 1 35 35 H 1.00895 * 110.99712 * 32.57765 * 6 4 2 36 36 H 1.09001 * 109.46712 * 60.00151 * 7 6 4 37 37 H 1.09002 * 109.47411 * 300.00262 * 7 6 4 38 38 H 1.09001 * 109.46652 * 60.00371 * 8 7 6 39 39 H 1.08992 * 109.47514 * 300.00460 * 8 7 6 40 40 H 1.09002 * 109.47398 * 300.00496 * 9 8 7 41 41 H 1.09001 * 109.47194 * 60.00677 * 9 8 7 42 42 H 0.97000 * 120.00333 * 179.97438 * 13 12 10 43 43 H 1.08995 * 113.61165 * 89.15675 * 18 4 2 44 44 H 1.08996 * 113.61023 * 220.06135 * 18 4 2 45 45 H 1.08998 * 109.46544 * 299.99691 * 22 21 19 46 46 H 1.08994 * 109.47083 * 59.99338 * 22 21 19 47 47 H 1.07997 * 119.99804 * 359.97438 * 24 23 22 48 48 H 1.08003 * 120.00026 * 180.20875 * 25 24 23 49 49 H 1.08002 * 119.99526 * 179.79348 * 26 25 24 50 50 H 1.08001 * 119.99655 * 179.97438 * 27 26 25 51 51 H 1.08000 * 119.99887 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 1 1.4940 -1.7514 1.3516 6 7 2.7108 -0.2124 2.2121 7 6 2.7694 -1.0817 3.3948 8 6 3.3623 -0.3032 4.5710 9 6 3.4238 -1.2089 5.8026 10 6 4.0072 -0.4419 6.9614 11 1 4.3039 0.5884 6.8322 12 6 4.1622 -1.0557 8.1862 13 7 3.8004 -2.3103 8.3435 14 14 4.8846 -0.1048 9.6227 15 1 4.0293 1.0728 9.9170 16 1 4.9445 -0.9839 10.8180 17 1 6.2539 0.3525 9.2748 18 6 3.1928 -1.3160 0.0024 19 6 2.1459 -0.9300 -1.0585 20 1 1.4944 -1.7548 -1.3473 21 8 2.6935 -0.2361 -2.1813 22 6 2.6444 -0.9764 -3.4026 23 6 3.2443 -0.1533 -4.5133 24 6 2.4409 0.6841 -5.2645 25 6 2.9919 1.4419 -6.2808 26 6 4.3447 1.3559 -6.5517 27 6 5.1473 0.5149 -5.8036 28 6 4.5969 -0.2404 -4.7851 29 1 -0.3632 0.3312 0.9729 30 1 -0.3633 0.6769 -0.7732 31 1 -0.3633 -1.0081 -0.1995 32 1 3.1942 1.3533 -0.1997 33 1 1.6414 2.0076 -0.7732 34 1 1.9600 1.8734 0.9728 35 1 2.1883 0.6285 2.4069 36 1 3.3964 -1.9468 3.1791 37 1 1.7639 -1.4164 3.6500 38 1 2.7355 0.5621 4.7868 39 1 4.3677 0.0311 4.3156 40 1 2.4185 -1.5436 6.0582 41 1 4.0508 -2.0739 5.5866 42 1 3.9097 -2.7422 9.2052 43 1 4.0724 -0.6724 0.0021 44 1 3.4431 -2.3768 0.0044 45 1 3.2094 -1.9016 -3.2896 46 1 1.6077 -1.2110 -3.6438 47 1 1.3833 0.7481 -5.0556 48 1 2.3648 2.0987 -6.8655 49 1 4.7745 1.9455 -7.3479 50 1 6.2041 0.4475 -6.0155 51 1 5.2239 -0.8977 -4.2009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182324867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:54 Heat of formation + Delta-G solvation = -35.574102 kcal Electronic energy + Delta-G solvation = -25715.526055 eV Core-core repulsion = 22192.896821 eV Total energy + Delta-G solvation = -3522.629234 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28743 -40.10184 -37.86521 -36.63191 -34.91163 -32.80768 -32.39162 -31.78112 -31.27127 -28.42534 -28.08595 -26.94905 -24.89119 -23.64670 -23.46148 -23.02696 -22.22827 -21.96914 -19.29316 -18.47895 -18.01715 -17.57498 -16.95670 -16.55249 -16.42877 -16.40272 -16.02447 -15.63685 -15.50759 -15.08735 -14.55563 -14.34168 -14.26197 -14.06561 -13.98586 -13.82542 -13.69875 -13.41957 -13.06054 -13.01205 -12.95634 -12.81394 -12.58024 -12.47817 -12.43317 -12.26218 -12.00181 -11.88095 -11.68787 -11.55799 -11.49448 -11.34223 -11.24514 -10.90794 -10.54882 -10.24072 -9.81490 -9.74134 -9.31948 -8.19962 -6.31084 0.35597 0.50715 1.39684 1.43122 1.51049 2.41003 2.59152 3.07906 3.12780 3.35669 3.45342 3.59576 3.84679 3.88149 3.96768 4.02329 4.16451 4.23083 4.28929 4.30664 4.34759 4.38498 4.41731 4.51543 4.55765 4.66546 4.72840 4.75798 4.79243 4.82194 4.91169 5.01115 5.01834 5.08937 5.09085 5.12617 5.16326 5.17547 5.21960 5.24945 5.47001 5.51925 5.55410 5.56202 5.61968 5.68380 5.75420 5.85803 6.10625 6.15520 6.28902 6.36427 6.50494 6.85429 7.37908 8.91632 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024496 B = 0.001859 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.782992 B =15057.291070 C =15481.872533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C -0.105 4.105 4 C 0.062 3.938 5 H 0.074 0.926 6 N -0.674 5.674 7 C 0.074 3.926 8 C -0.092 4.092 9 C 0.026 3.974 10 C -0.545 4.545 11 H 0.059 0.941 12 C -0.002 4.002 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.143 4.143 19 C 0.079 3.921 20 H 0.104 0.896 21 O -0.374 6.374 22 C 0.098 3.902 23 C -0.105 4.105 24 C -0.111 4.111 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.344 0.656 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.008 1.008 41 H -0.010 1.010 42 H 0.264 0.736 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.132 0.868 48 H 0.142 0.858 49 H 0.143 0.857 50 H 0.138 0.862 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 5.007 -32.367 33.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.079 4.079 3 C -0.163 4.163 4 C -0.048 4.048 5 H 0.092 0.908 6 N -0.306 5.306 7 C -0.055 4.055 8 C -0.130 4.130 9 C -0.012 4.012 10 C -0.583 4.583 11 H 0.077 0.923 12 C -0.199 4.199 13 N -0.573 5.573 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.181 4.181 19 C 0.020 3.980 20 H 0.122 0.878 21 O -0.294 6.294 22 C 0.022 3.978 23 C -0.105 4.105 24 C -0.130 4.130 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.134 4.134 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.010 0.990 41 H 0.009 0.991 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.150 0.850 48 H 0.160 0.840 49 H 0.160 0.840 50 H 0.156 0.844 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.698 4.936 -32.411 33.120 hybrid contribution -0.481 -0.307 1.396 1.508 sum -5.179 4.628 -31.016 31.784 Atomic orbital electron populations 1.21778 0.92806 1.02561 1.02252 1.22350 0.95831 0.95892 0.93782 1.21195 1.00451 0.93629 1.01015 1.22907 0.95818 0.96545 0.89525 0.90774 1.60604 1.57294 1.08148 1.04572 1.21857 0.98301 0.95770 0.89614 1.21370 0.99965 0.98054 0.93629 1.18967 0.94841 0.94576 0.92825 1.21675 1.41583 0.98631 0.96368 0.92302 1.26003 0.95976 0.95941 1.02026 1.70091 1.49050 1.12884 1.25290 0.85487 0.79191 0.78443 0.77846 1.19131 1.20707 1.19257 1.23550 0.98386 1.01145 0.95039 1.23722 0.94967 0.94836 0.84442 0.87847 1.88028 1.82197 1.42779 1.16354 1.21458 1.00227 0.93344 0.82739 1.19802 0.94395 0.99380 0.96897 1.21295 1.00483 0.95573 0.95599 1.21468 0.95870 0.99581 0.97988 1.21534 0.94104 0.98508 0.99948 1.21445 1.00971 0.96787 0.95896 1.21293 0.94571 0.99736 0.97800 0.92542 0.91513 0.91638 0.93282 0.92255 0.92573 0.83620 0.92349 0.95784 0.93143 0.93132 0.99012 0.99132 0.92773 0.90273 0.91337 0.92034 0.91193 0.85008 0.83995 0.83964 0.84382 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.19 71.98 0.66 -1.60 16 2 C -0.08 -1.56 1.26 -51.66 -0.06 -1.62 16 3 C -0.11 -2.30 7.85 71.98 0.56 -1.74 16 4 C 0.06 1.49 3.57 45.44 0.16 1.65 16 5 H 0.07 1.76 7.84 -2.39 -0.02 1.74 16 6 N -0.67 -19.64 6.04 -488.83 -2.95 -22.59 16 7 C 0.07 2.60 5.54 86.30 0.48 3.08 16 8 C -0.09 -3.94 5.41 30.59 0.17 -3.78 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.54 -31.91 9.11 25.60 0.23 -31.68 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 13 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 14 Si 0.97 45.09 29.54 68.60 2.03 47.12 16 15 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 C -0.14 -3.31 7.38 31.18 0.23 -3.08 16 19 C 0.08 1.50 3.72 31.18 0.12 1.62 16 20 H 0.10 1.56 7.69 -2.38 -0.02 1.55 16 21 O -0.37 -7.84 9.44 -148.98 -1.41 -9.24 16 22 C 0.10 1.61 5.90 71.23 0.42 2.03 16 23 C -0.10 -1.84 5.51 -19.87 -0.11 -1.95 16 24 C -0.11 -1.74 9.70 22.27 0.22 -1.52 16 25 C -0.13 -1.78 10.05 22.27 0.22 -1.55 16 26 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 27 C -0.13 -1.96 10.05 22.27 0.22 -1.74 16 28 C -0.12 -1.99 9.70 22.27 0.22 -1.78 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.94 7.94 -2.39 -0.02 0.92 16 32 H 0.05 1.24 7.21 -2.39 -0.02 1.23 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.21 6.75 -2.39 -0.02 1.20 16 35 H 0.34 9.44 7.01 -89.70 -0.63 8.81 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.08 2.16 7.67 -2.39 -0.02 2.14 16 44 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 46 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 49 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 50 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 51 H 0.12 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -67.40 410.06 2.77 -64.64 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.24 Total: 20.69 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 4.57 Total: -43.15 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.67 Total: -80.05 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.41 Total: -9.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -67.40 2.77 -64.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182324867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.065 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds