Wall clock time and date at job start Tue Mar 31 2020 11:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 112.90800 * 2 1 4 4 C 1.53778 * 113.61657 * 131.24942 * 2 1 3 5 5 H 1.08998 * 113.61937 * 203.75107 * 4 2 1 6 6 N 1.46904 * 113.61298 * 334.57244 * 4 2 1 7 7 C 1.46899 * 111.00029 * 203.46892 * 6 4 2 8 8 C 1.52997 * 109.47254 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46778 * 60.00380 * 14 12 10 16 16 H 1.48503 * 109.47134 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 300.00322 * 14 12 10 18 18 C 1.53777 * 87.17158 * 89.15737 * 4 2 1 19 19 C 1.53783 * 87.08185 * 25.39518 * 18 4 2 20 20 H 1.08999 * 113.61125 * 220.02297 * 19 18 4 21 21 O 1.42894 * 113.61404 * 89.11185 * 19 18 4 22 22 C 1.42902 * 113.99974 * 109.51093 * 21 19 18 23 23 C 1.50699 * 109.47250 * 180.02562 * 22 21 19 24 24 C 1.38237 * 119.99646 * 269.72211 * 23 22 21 25 25 C 1.38235 * 119.99758 * 179.76491 * 24 23 22 26 26 C 1.38237 * 119.99888 * 0.51018 * 25 24 23 27 27 C 1.38237 * 120.00162 * 359.74490 * 26 25 24 28 28 C 1.38233 * 119.99905 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47306 * 288.75049 * 1 2 3 30 30 H 1.09009 * 109.47042 * 48.74644 * 1 2 3 31 31 H 1.08999 * 109.47318 * 168.74668 * 1 2 3 32 32 H 1.09003 * 109.47534 * 191.24953 * 3 2 1 33 33 H 1.09000 * 109.47170 * 311.25169 * 3 2 1 34 34 H 1.09001 * 109.46999 * 71.24976 * 3 2 1 35 35 H 1.00908 * 110.99583 * 327.41805 * 6 4 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 7 6 4 37 37 H 1.09001 * 109.47354 * 59.99854 * 7 6 4 38 38 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 40 40 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 41 41 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 42 42 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 43 43 H 1.09006 * 113.61412 * 139.93918 * 18 4 2 44 44 H 1.08997 * 113.61730 * 270.76115 * 18 4 2 45 45 H 1.09005 * 109.46791 * 299.99687 * 22 21 19 46 46 H 1.09005 * 109.47357 * 59.99371 * 22 21 19 47 47 H 1.07997 * 120.00097 * 359.97438 * 24 23 22 48 48 H 1.08001 * 120.00089 * 180.22908 * 25 24 23 49 49 H 1.07998 * 119.99670 * 179.71959 * 26 25 24 50 50 H 1.07997 * 119.99894 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99952 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 1 3.1585 -0.6490 1.3501 6 7 1.2679 -1.1711 2.2119 7 6 2.0468 -1.5638 3.3939 8 6 1.1002 -1.8061 4.5711 9 6 1.9113 -2.2157 5.8019 10 6 0.9789 -2.4538 6.9617 11 1 -0.0859 -2.3261 6.8336 12 6 1.4850 -2.8356 8.1861 13 7 2.7816 -2.9916 8.3420 14 14 0.3293 -3.1299 9.6238 15 1 -0.6262 -4.2126 9.2771 16 1 1.1166 -3.5277 10.8184 17 1 -0.4213 -1.8831 9.9189 18 6 2.0949 -2.0438 0.0013 19 6 2.1467 -0.9314 -1.0594 20 1 1.4957 -1.1130 -1.9145 21 8 3.4744 -0.5639 -1.4389 22 6 3.8336 -0.9678 -2.7618 23 6 5.2461 -0.5315 -3.0542 24 6 5.4835 0.7061 -3.6224 25 6 6.7795 1.1084 -3.8861 26 6 7.8373 0.2687 -3.5913 27 6 7.5995 -0.9710 -3.0280 28 6 6.3039 -1.3714 -2.7599 29 1 -0.3634 0.3303 0.9731 30 1 -0.3634 0.6777 -0.7727 31 1 -0.3634 -1.0079 -0.2005 32 1 3.1954 1.3518 -0.2005 33 1 1.6428 2.0078 -0.7726 34 1 1.9627 1.8726 0.9731 35 1 0.6969 -0.3624 2.4075 36 1 2.5995 -2.4781 3.1774 37 1 2.7467 -0.7679 3.6487 38 1 0.5479 -0.8916 4.7874 39 1 0.4000 -2.6017 4.3166 40 1 2.4633 -3.1303 5.5854 41 1 2.6117 -1.4203 6.0567 42 1 3.1376 -3.2598 9.2034 43 1 2.9747 -2.6874 0.0023 44 1 1.1603 -2.6045 0.0026 45 1 3.7650 -2.0528 -2.8416 46 1 3.1546 -0.5071 -3.4794 47 1 4.6567 1.3601 -3.8571 48 1 6.9652 2.0768 -4.3266 49 1 8.8495 0.5812 -3.8016 50 1 8.4260 -1.6272 -2.7981 51 1 6.1181 -2.3401 -2.3201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182324885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:57 Heat of formation + Delta-G solvation = -17.638486 kcal Electronic energy + Delta-G solvation = -25881.456958 eV Core-core repulsion = 22359.605470 eV Total energy + Delta-G solvation = -3521.851488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45136 -39.47627 -36.91045 -35.09063 -32.98846 -32.07805 -31.20536 -30.85640 -30.11507 -27.53537 -26.46536 -26.03288 -23.54871 -22.89233 -22.55345 -21.86424 -21.53282 -20.16011 -18.40734 -17.31789 -16.65514 -16.27220 -15.96906 -15.71962 -15.49514 -14.98789 -14.88440 -14.53018 -14.40063 -14.03441 -13.69799 -13.55273 -13.20494 -13.05329 -12.99680 -12.46014 -12.33975 -12.28702 -12.07084 -12.03572 -11.76272 -11.54245 -11.39326 -11.30630 -11.27336 -10.90693 -10.79503 -10.55162 -10.53818 -10.31869 -10.05741 -9.63164 -9.52302 -9.24948 -9.21817 -9.13879 -8.98991 -8.29807 -8.07223 -5.95047 -3.97084 0.95419 1.10379 3.19694 3.36540 3.40419 3.43267 3.73168 4.32521 4.42444 4.46135 4.51258 4.55548 4.61607 4.70764 4.81836 4.86038 4.97148 5.01462 5.07462 5.16654 5.18879 5.27542 5.34800 5.40380 5.57228 5.60584 5.65171 5.66847 5.73125 5.80555 5.84280 5.90677 5.95832 5.99737 6.08295 6.13417 6.15784 6.20075 6.28736 6.35886 6.38762 6.41829 6.67307 6.79327 6.86404 7.07992 7.20114 7.48255 7.71836 7.74383 7.89910 8.05805 8.49042 9.10039 9.66460 11.16377 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002083 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.871352 B =13441.531934 C =14480.828900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.076 3.924 5 H 0.073 0.927 6 N -0.678 5.678 7 C 0.059 3.941 8 C -0.106 4.106 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.144 4.144 19 C 0.070 3.930 20 H 0.073 0.927 21 O -0.355 6.355 22 C 0.103 3.897 23 C -0.089 4.089 24 C -0.099 4.099 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.098 4.098 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.337 0.663 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.043 0.957 39 H 0.055 0.945 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.260 0.740 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.122 0.878 48 H 0.122 0.878 49 H 0.122 0.878 50 H 0.123 0.877 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 7.588 -29.300 30.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.087 4.087 3 C -0.192 4.192 4 C -0.035 4.035 5 H 0.091 0.909 6 N -0.309 5.309 7 C -0.070 4.070 8 C -0.144 4.144 9 C -0.015 4.015 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.183 4.183 19 C 0.011 3.989 20 H 0.091 0.909 21 O -0.274 6.274 22 C 0.026 3.974 23 C -0.089 4.089 24 C -0.117 4.117 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.141 4.141 28 C -0.116 4.116 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.140 0.860 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.627 6.993 -29.212 30.392 hybrid contribution -0.166 0.497 1.034 1.160 sum 4.461 7.490 -28.178 29.496 Atomic orbital electron populations 1.21469 0.92059 1.02215 1.02068 1.22366 0.95946 0.94889 0.95490 1.21630 1.01712 0.94692 1.01156 1.22993 0.95664 0.94989 0.89823 0.90935 1.60761 1.23878 1.40848 1.05433 1.22154 0.95751 0.99312 0.89754 1.21614 0.98058 1.00317 0.94445 1.19057 0.95143 0.96466 0.90878 1.21229 0.93469 1.45791 0.95179 0.92746 1.25041 0.95041 0.95660 0.98858 1.69962 1.11415 1.47876 1.24374 0.86653 0.80822 0.78644 0.81838 1.20240 1.21339 1.20293 1.23542 1.02789 0.96756 0.95189 1.23141 0.83660 0.96327 0.95771 0.90918 1.87954 1.30042 1.79107 1.30272 1.21342 0.92225 0.98797 0.84987 1.19618 0.94319 0.95095 0.99850 1.21065 0.97092 0.95270 0.98309 1.21151 0.92680 0.99784 1.00669 1.21211 0.99102 0.94354 0.98728 1.21178 0.96820 0.96710 0.99415 1.21113 0.92312 0.99814 0.98328 0.91486 0.92831 0.91754 0.91384 0.92985 0.92882 0.84392 0.91632 0.95894 0.93784 0.92641 0.96624 0.96869 0.93015 0.91378 0.88555 0.92401 0.92525 0.86007 0.85970 0.86048 0.85863 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.47 37.16 0.31 -0.85 16 2 C -0.09 -0.93 1.26 -153.61 -0.19 -1.12 16 3 C -0.13 -1.44 9.04 37.16 0.34 -1.10 16 4 C 0.08 1.00 3.50 -66.90 -0.23 0.77 16 5 H 0.07 1.09 7.84 -51.93 -0.41 0.68 16 6 N -0.68 -10.15 6.04 -105.87 -0.64 -10.79 16 7 C 0.06 1.07 5.54 -3.83 -0.02 1.05 16 8 C -0.11 -2.28 5.41 -26.74 -0.14 -2.42 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 11 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 14 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C -0.14 -1.71 7.36 -25.92 -0.19 -1.90 16 19 C 0.07 0.72 3.78 -25.83 -0.10 0.62 16 20 H 0.07 0.64 7.86 -51.93 -0.41 0.23 16 21 O -0.35 -3.94 8.79 -35.23 -0.31 -4.25 16 22 C 0.10 0.90 5.92 36.01 0.21 1.12 16 23 C -0.09 -0.83 5.51 -104.62 -0.58 -1.40 16 24 C -0.10 -0.85 9.70 -39.58 -0.38 -1.23 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 28 C -0.10 -0.89 9.70 -39.58 -0.38 -1.27 16 29 H 0.07 0.67 6.75 -51.93 -0.35 0.32 16 30 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.63 7.35 -51.93 -0.38 0.24 16 32 H 0.07 0.80 6.96 -51.93 -0.36 0.44 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.34 4.77 7.01 -39.29 -0.28 4.49 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.13 7.67 -51.93 -0.40 0.74 16 45 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 46 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 49 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 50 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 409.21 15.07 6.17 6.17 Total: -1.00 -31.56 409.21 -11.48 -43.04 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -9.31 Total: 0.88 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -3.11 Total: -25.28 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.10 Total: -37.65 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.31 Total: -4.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.56 -11.48 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182324885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.402 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds