Wall clock time and date at job start Tue Mar 31 2020 11:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 112.90800 * 2 1 4 4 C 1.53778 * 113.61657 * 131.24942 * 2 1 3 5 5 H 1.08998 * 113.61937 * 203.75107 * 4 2 1 6 6 N 1.46904 * 113.61298 * 334.57244 * 4 2 1 7 7 C 1.46899 * 111.00029 * 203.46892 * 6 4 2 8 8 C 1.52997 * 109.47254 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46778 * 60.00380 * 14 12 10 16 16 H 1.48503 * 109.47134 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 300.00322 * 14 12 10 18 18 C 1.53777 * 87.17158 * 89.15737 * 4 2 1 19 19 C 1.53783 * 87.08185 * 25.39518 * 18 4 2 20 20 H 1.08999 * 113.61125 * 220.02297 * 19 18 4 21 21 O 1.42894 * 113.61404 * 89.11185 * 19 18 4 22 22 C 1.42902 * 113.99974 * 109.51093 * 21 19 18 23 23 C 1.50699 * 109.47250 * 180.02562 * 22 21 19 24 24 C 1.38237 * 119.99646 * 269.72211 * 23 22 21 25 25 C 1.38235 * 119.99758 * 179.76491 * 24 23 22 26 26 C 1.38237 * 119.99888 * 0.51018 * 25 24 23 27 27 C 1.38237 * 120.00162 * 359.74490 * 26 25 24 28 28 C 1.38233 * 119.99905 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47306 * 288.75049 * 1 2 3 30 30 H 1.09009 * 109.47042 * 48.74644 * 1 2 3 31 31 H 1.08999 * 109.47318 * 168.74668 * 1 2 3 32 32 H 1.09003 * 109.47534 * 191.24953 * 3 2 1 33 33 H 1.09000 * 109.47170 * 311.25169 * 3 2 1 34 34 H 1.09001 * 109.46999 * 71.24976 * 3 2 1 35 35 H 1.00908 * 110.99583 * 327.41805 * 6 4 2 36 36 H 1.09002 * 109.47043 * 299.99792 * 7 6 4 37 37 H 1.09001 * 109.47354 * 59.99854 * 7 6 4 38 38 H 1.09002 * 109.47153 * 300.00004 * 8 7 6 39 39 H 1.08998 * 109.47533 * 59.99633 * 8 7 6 40 40 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 41 41 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 42 42 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 43 43 H 1.09006 * 113.61412 * 139.93918 * 18 4 2 44 44 H 1.08997 * 113.61730 * 270.76115 * 18 4 2 45 45 H 1.09005 * 109.46791 * 299.99687 * 22 21 19 46 46 H 1.09005 * 109.47357 * 59.99371 * 22 21 19 47 47 H 1.07997 * 120.00097 * 359.97438 * 24 23 22 48 48 H 1.08001 * 120.00089 * 180.22908 * 25 24 23 49 49 H 1.07998 * 119.99670 * 179.71959 * 26 25 24 50 50 H 1.07997 * 119.99894 * 179.97438 * 27 26 25 51 51 H 1.08001 * 119.99952 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1460 -0.9290 1.0593 5 1 3.1585 -0.6490 1.3501 6 7 1.2679 -1.1711 2.2119 7 6 2.0468 -1.5638 3.3939 8 6 1.1002 -1.8061 4.5711 9 6 1.9113 -2.2157 5.8019 10 6 0.9789 -2.4538 6.9617 11 1 -0.0859 -2.3261 6.8336 12 6 1.4850 -2.8356 8.1861 13 7 2.7816 -2.9916 8.3420 14 14 0.3293 -3.1299 9.6238 15 1 -0.6262 -4.2126 9.2771 16 1 1.1166 -3.5277 10.8184 17 1 -0.4213 -1.8831 9.9189 18 6 2.0949 -2.0438 0.0013 19 6 2.1467 -0.9314 -1.0594 20 1 1.4957 -1.1130 -1.9145 21 8 3.4744 -0.5639 -1.4389 22 6 3.8336 -0.9678 -2.7618 23 6 5.2461 -0.5315 -3.0542 24 6 5.4835 0.7061 -3.6224 25 6 6.7795 1.1084 -3.8861 26 6 7.8373 0.2687 -3.5913 27 6 7.5995 -0.9710 -3.0280 28 6 6.3039 -1.3714 -2.7599 29 1 -0.3634 0.3303 0.9731 30 1 -0.3634 0.6777 -0.7727 31 1 -0.3634 -1.0079 -0.2005 32 1 3.1954 1.3518 -0.2005 33 1 1.6428 2.0078 -0.7726 34 1 1.9627 1.8726 0.9731 35 1 0.6969 -0.3624 2.4075 36 1 2.5995 -2.4781 3.1774 37 1 2.7467 -0.7679 3.6487 38 1 0.5479 -0.8916 4.7874 39 1 0.4000 -2.6017 4.3166 40 1 2.4633 -3.1303 5.5854 41 1 2.6117 -1.4203 6.0567 42 1 3.1376 -3.2598 9.2034 43 1 2.9747 -2.6874 0.0023 44 1 1.1603 -2.6045 0.0026 45 1 3.7650 -2.0528 -2.8416 46 1 3.1546 -0.5071 -3.4794 47 1 4.6567 1.3601 -3.8571 48 1 6.9652 2.0768 -4.3266 49 1 8.8495 0.5812 -3.8016 50 1 8.4260 -1.6272 -2.7981 51 1 6.1181 -2.3401 -2.3201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182324885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:56 Heat of formation + Delta-G solvation = -33.941816 kcal Electronic energy + Delta-G solvation = -25882.163923 eV Core-core repulsion = 22359.605470 eV Total energy + Delta-G solvation = -3522.558453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.34983 -40.11367 -37.85467 -36.62343 -34.91547 -32.82453 -32.42074 -31.80505 -31.21136 -28.35470 -28.12468 -26.90795 -25.04365 -23.68513 -23.48666 -23.08805 -22.20607 -21.98474 -19.35200 -18.48594 -17.99707 -17.50184 -16.82451 -16.56170 -16.50564 -16.41858 -16.00379 -15.80524 -15.58196 -15.07446 -14.55937 -14.45100 -14.28737 -14.03169 -13.93142 -13.81269 -13.67724 -13.45828 -13.09683 -13.03085 -12.91180 -12.80015 -12.70312 -12.46618 -12.43625 -12.26254 -12.05685 -11.91668 -11.72262 -11.56505 -11.42613 -11.26854 -11.24181 -10.77392 -10.55745 -10.33194 -9.83859 -9.76838 -9.35150 -8.20363 -6.32003 0.32568 0.48367 1.39434 1.43318 1.51211 2.40781 2.50528 3.04191 3.12260 3.28652 3.48522 3.57554 3.85382 3.92006 3.95859 4.10976 4.15069 4.24364 4.26824 4.31343 4.31579 4.36701 4.41105 4.49604 4.59879 4.65177 4.70517 4.75899 4.81978 4.82856 4.89501 5.01094 5.02909 5.04700 5.06878 5.11997 5.13949 5.19058 5.24161 5.25436 5.49958 5.50720 5.53909 5.54680 5.59765 5.65632 5.73681 5.84673 6.08230 6.11829 6.26600 6.33450 6.51008 6.84797 7.37167 8.91518 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.002083 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.871352 B =13441.531934 C =14480.828900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.077 4.077 3 C -0.131 4.131 4 C 0.064 3.936 5 H 0.050 0.950 6 N -0.670 5.670 7 C 0.073 3.927 8 C -0.090 4.090 9 C 0.025 3.975 10 C -0.543 4.543 11 H 0.061 0.939 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.969 3.031 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.144 4.144 19 C 0.080 3.920 20 H 0.097 0.903 21 O -0.374 6.374 22 C 0.101 3.899 23 C -0.106 4.106 24 C -0.110 4.110 25 C -0.131 4.131 26 C -0.123 4.123 27 C -0.134 4.134 28 C -0.117 4.117 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.343 0.657 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.055 0.945 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.056 0.944 44 H 0.101 0.899 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.134 0.866 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.137 0.863 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.957 8.386 -30.536 31.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.078 4.078 3 C -0.188 4.188 4 C -0.046 4.046 5 H 0.068 0.932 6 N -0.301 5.301 7 C -0.056 4.056 8 C -0.128 4.128 9 C -0.012 4.012 10 C -0.581 4.581 11 H 0.080 0.920 12 C -0.202 4.202 13 N -0.575 5.575 14 Si 0.793 3.207 15 H -0.191 1.191 16 H -0.208 1.208 17 H -0.190 1.190 18 C -0.182 4.182 19 C 0.021 3.979 20 H 0.115 0.885 21 O -0.293 6.293 22 C 0.025 3.975 23 C -0.106 4.106 24 C -0.128 4.128 25 C -0.149 4.149 26 C -0.141 4.141 27 C -0.152 4.152 28 C -0.135 4.135 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.007 0.993 41 H 0.006 0.994 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.152 0.848 48 H 0.161 0.839 49 H 0.160 0.840 50 H 0.155 0.845 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.067 7.798 -30.474 31.605 hybrid contribution 0.412 0.259 1.383 1.466 sum 3.479 8.058 -29.091 30.386 Atomic orbital electron populations 1.21474 0.90705 1.02849 1.02548 1.22348 0.96818 0.94497 0.94114 1.21584 1.00938 0.94835 1.01447 1.23079 0.94542 0.97251 0.89727 0.93209 1.60720 1.23603 1.41384 1.04430 1.21834 0.94996 0.98720 0.90062 1.21358 0.97711 1.00383 0.93339 1.18966 0.94889 0.94371 0.93022 1.21671 0.94133 1.46061 0.96248 0.92037 1.26054 0.96848 0.95099 1.02182 1.70106 1.13550 1.48537 1.25342 0.85450 0.78519 0.79105 0.77665 1.19063 1.20813 1.19043 1.23542 1.02520 0.96733 0.95421 1.23068 0.83870 0.94858 0.96097 0.88479 1.87941 1.30463 1.79233 1.31671 1.21468 0.92411 0.99294 0.84294 1.19803 0.94633 0.95667 1.00463 1.21310 0.97986 0.95227 0.98273 1.21480 0.92453 1.00684 1.00286 1.21538 1.00276 0.94086 0.98169 1.21444 0.96967 0.97408 0.99418 1.21298 0.92984 1.00184 0.99034 0.91954 0.90822 0.91631 0.92876 0.91188 0.93430 0.83667 0.92694 0.96709 0.93002 0.92643 0.99286 0.99408 0.92769 0.92472 0.88085 0.91906 0.90755 0.84768 0.83895 0.83991 0.84519 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 8.47 71.98 0.61 -1.38 16 2 C -0.08 -1.55 1.26 -51.60 -0.07 -1.61 16 3 C -0.13 -2.63 9.04 71.98 0.65 -1.97 16 4 C 0.06 1.69 3.50 45.44 0.16 1.85 16 5 H 0.05 1.55 7.84 -2.39 -0.02 1.54 16 6 N -0.67 -19.85 6.04 -488.86 -2.95 -22.80 16 7 C 0.07 2.72 5.54 86.30 0.48 3.20 16 8 C -0.09 -3.89 5.41 30.59 0.17 -3.73 16 9 C 0.03 1.39 4.97 29.84 0.15 1.54 16 10 C -0.54 -32.00 9.11 25.60 0.23 -31.76 16 11 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 12 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 13 N -0.94 -58.61 13.29 21.45 0.28 -58.32 16 14 Si 0.97 45.25 29.54 68.60 2.03 47.27 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C -0.14 -3.33 7.36 31.12 0.23 -3.10 16 19 C 0.08 1.52 3.78 31.18 0.12 1.64 16 20 H 0.10 1.41 7.86 -2.39 -0.02 1.39 16 21 O -0.37 -8.02 8.79 -148.98 -1.31 -9.33 16 22 C 0.10 1.68 5.92 71.24 0.42 2.10 16 23 C -0.11 -1.92 5.51 -19.87 -0.11 -2.03 16 24 C -0.11 -1.77 9.70 22.27 0.22 -1.56 16 25 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 26 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 28 C -0.12 -2.15 9.70 22.27 0.22 -1.93 16 29 H 0.06 1.12 6.75 -2.39 -0.02 1.10 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 1.10 7.35 -2.39 -0.02 1.09 16 32 H 0.05 1.23 6.96 -2.39 -0.02 1.21 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.34 9.41 7.01 -89.69 -0.63 8.78 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.01 0.57 8.13 -2.39 -0.02 0.55 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.10 2.25 7.67 -2.39 -0.02 2.23 16 45 H 0.06 0.95 8.08 -2.38 -0.02 0.93 16 46 H 0.07 0.94 8.08 -2.38 -0.02 0.93 16 47 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 49 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 50 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 51 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.64 409.21 2.90 -65.74 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.24 Total: 21.14 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 4.60 Total: -43.70 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -2.67 Total: -81.12 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -1.31 Total: -9.33 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.64 2.90 -65.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182324885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.798 kcal (2) G-P(sol) polarization free energy of solvation -68.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds