Wall clock time and date at job start Tue Mar 31 2020 11:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 112.90942 * 2 1 4 4 C 1.53786 * 113.60835 * 228.75389 * 2 1 3 5 5 H 1.09003 * 113.60957 * 156.33525 * 4 2 1 6 6 O 1.42891 * 113.61705 * 25.43450 * 4 2 1 7 7 C 1.42898 * 114.00196 * 152.99858 * 6 4 2 8 8 C 1.50699 * 109.47571 * 179.97438 * 7 6 4 9 9 C 1.38237 * 120.00003 * 269.73064 * 8 7 6 10 10 C 1.38234 * 119.99970 * 179.78994 * 9 8 7 11 11 C 1.38234 * 120.00264 * 0.45208 * 10 9 8 12 12 C 1.38238 * 119.99628 * 359.77615 * 11 10 9 13 13 C 1.38231 * 120.00102 * 0.02562 * 12 11 10 14 14 C 1.53776 * 87.07968 * 270.88296 * 4 2 1 15 15 C 1.53781 * 113.61304 * 131.25688 * 2 1 3 16 16 H 1.08996 * 113.68885 * 203.67126 * 15 2 1 17 17 N 1.46897 * 113.61654 * 334.56844 * 15 2 1 18 18 C 1.46897 * 110.99772 * 202.00349 * 17 15 2 19 19 C 1.53006 * 109.47003 * 179.97438 * 18 17 15 20 20 C 1.52999 * 109.47212 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47110 * 179.97438 * 20 19 18 22 22 H 1.07997 * 120.00012 * 0.02562 * 21 20 19 23 23 C 1.37877 * 119.99842 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00069 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99806 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00621 * 25 23 21 27 27 H 1.48503 * 109.47399 * 210.00111 * 25 23 21 28 28 H 1.48498 * 109.47295 * 330.00717 * 25 23 21 29 29 H 1.09000 * 109.46672 * 288.74526 * 1 2 3 30 30 H 1.09002 * 109.47177 * 48.74160 * 1 2 3 31 31 H 1.08999 * 109.47461 * 168.74460 * 1 2 3 32 32 H 1.08995 * 109.47525 * 191.24781 * 3 2 1 33 33 H 1.08995 * 109.47691 * 311.25686 * 3 2 1 34 34 H 1.09008 * 109.46641 * 71.25325 * 3 2 1 35 35 H 1.09001 * 109.47272 * 299.99629 * 7 6 4 36 36 H 1.08999 * 109.47377 * 59.99509 * 7 6 4 37 37 H 1.08004 * 119.99679 * 359.97438 * 9 8 7 38 38 H 1.08007 * 119.99980 * 180.25143 * 10 9 8 39 39 H 1.07993 * 120.00018 * 179.79607 * 11 10 9 40 40 H 1.07998 * 119.99680 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.00006 * 179.97438 * 13 12 11 42 42 H 1.09007 * 113.61673 * 220.01891 * 14 4 2 43 43 H 1.09000 * 113.69323 * 89.12848 * 14 4 2 44 44 H 1.00899 * 111.00193 * 78.04740 * 17 15 2 45 45 H 1.08997 * 109.47661 * 59.99670 * 18 17 15 46 46 H 1.09000 * 109.46973 * 299.99305 * 18 17 15 47 47 H 1.09005 * 109.46555 * 59.99936 * 19 18 17 48 48 H 1.08996 * 109.47213 * 300.00529 * 19 18 17 49 49 H 1.09008 * 109.46748 * 60.00264 * 20 19 18 50 50 H 1.08991 * 109.47440 * 300.00468 * 20 19 18 51 51 H 0.97000 * 119.99838 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 -1.0595 5 1 3.1590 -0.6498 -1.3491 6 8 1.2918 -1.1643 -2.1806 7 6 1.9900 -1.4735 -3.3885 8 6 0.9968 -1.7020 -4.4986 9 6 0.5057 -2.9722 -4.7361 10 6 -0.4087 -3.1810 -5.7516 11 6 -0.8250 -2.1213 -6.5355 12 6 -0.3304 -0.8519 -6.3010 13 6 0.5809 -0.6424 -5.2829 14 6 2.0929 -2.0425 -0.0003 15 6 2.1461 -0.9292 1.0593 16 1 3.1591 -0.6511 1.3499 17 7 1.2680 -1.1713 2.2118 18 6 2.0438 -1.5978 3.3841 19 6 1.0972 -1.8392 4.5617 20 6 1.9050 -2.2841 5.7825 21 6 0.9728 -2.5212 6.9425 22 1 -0.0896 -2.3702 6.8211 23 6 1.4763 -2.9310 8.1589 24 7 2.7702 -3.1144 8.3069 25 14 0.3206 -3.2256 9.5966 26 1 -0.1303 -4.6405 9.5873 27 1 1.0311 -2.9410 10.8693 28 1 -0.8576 -2.3298 9.4763 29 1 -0.3633 0.3303 0.9732 30 1 -0.3633 0.6777 -0.7725 31 1 -0.3634 -1.0079 -0.2006 32 1 3.1955 1.3517 -0.2004 33 1 1.6429 2.0078 -0.7725 34 1 1.9628 1.8725 0.9732 35 1 2.6453 -0.6433 -3.6521 36 1 2.5858 -2.3747 -3.2433 37 1 0.8343 -3.8009 -4.1264 38 1 -0.7954 -4.1727 -5.9345 39 1 -1.5369 -2.2851 -7.3309 40 1 -0.6554 -0.0241 -6.9138 41 1 0.9676 0.3493 -5.1000 42 1 2.9716 -2.6876 -0.0003 43 1 1.1574 -2.6019 0.0008 44 1 0.5530 -1.8465 1.9861 45 1 2.7606 -0.8203 3.6480 46 1 2.5769 -2.5196 3.1512 47 1 0.3801 -2.6167 4.2979 48 1 0.5643 -0.9173 4.7944 49 1 2.6224 -1.5068 6.0463 50 1 2.4376 -3.2060 5.5495 51 1 3.3702 -2.9618 7.5602 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182324924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:02 Heat of formation + Delta-G solvation = -24.561756 kcal Electronic energy + Delta-G solvation = -25760.222526 eV Core-core repulsion = 22238.070823 eV Total energy + Delta-G solvation = -3522.151703 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47750 -39.53310 -37.00604 -35.29058 -33.29840 -32.10476 -31.24875 -30.93514 -29.93009 -27.45945 -26.53571 -25.68821 -23.32618 -22.93773 -22.63716 -22.05579 -21.66703 -20.50817 -18.51942 -17.31613 -16.91556 -16.64558 -16.00409 -15.78837 -15.42159 -15.01431 -14.79014 -14.51506 -14.13723 -13.75329 -13.70608 -13.59384 -13.43297 -13.25934 -13.07028 -12.83270 -12.47677 -12.19838 -12.07046 -11.95589 -11.72303 -11.68177 -11.41872 -11.35233 -11.31092 -10.92823 -10.78827 -10.72484 -10.63745 -10.22788 -10.09975 -9.80098 -9.66870 -9.49719 -9.26294 -9.17506 -8.49058 -8.28462 -8.10581 -6.32379 -4.00659 0.91844 1.05897 3.21992 3.45921 3.49997 3.65813 3.75733 4.30378 4.34974 4.41018 4.50752 4.52613 4.58624 4.64643 4.71246 4.80143 4.84087 4.93048 5.01204 5.15409 5.21196 5.23463 5.30412 5.40871 5.44913 5.54484 5.61621 5.68160 5.68720 5.71981 5.77063 5.84634 5.87172 5.96638 6.00005 6.09399 6.15405 6.15730 6.23854 6.24843 6.30603 6.49167 6.62796 6.63061 6.68510 7.01088 7.05064 7.31944 7.47201 7.56600 7.64329 8.27789 8.51677 8.93333 9.71534 11.08358 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.023991 B = 0.001874 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.842383 B =14936.892938 C =15394.033493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.135 4.135 4 C 0.069 3.931 5 H 0.084 0.916 6 O -0.359 6.359 7 C 0.100 3.900 8 C -0.087 4.087 9 C -0.099 4.099 10 C -0.124 4.124 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.099 4.099 14 C -0.186 4.186 15 C 0.077 3.923 16 H 0.096 0.904 17 N -0.672 5.672 18 C 0.059 3.941 19 C -0.100 4.100 20 C 0.009 3.991 21 C -0.599 4.599 22 H 0.049 0.951 23 C 0.012 3.988 24 N -0.916 5.916 25 Si 1.072 2.928 26 H -0.288 1.288 27 H -0.284 1.284 28 H -0.289 1.289 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.341 0.659 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.046 0.954 48 H 0.057 0.943 49 H 0.007 0.993 50 H 0.004 0.996 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 4.878 -31.697 32.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.068 4.068 3 C -0.192 4.192 4 C 0.010 3.990 5 H 0.102 0.898 6 O -0.278 6.278 7 C 0.024 3.976 8 C -0.088 4.088 9 C -0.117 4.117 10 C -0.142 4.142 11 C -0.135 4.135 12 C -0.142 4.142 13 C -0.117 4.117 14 C -0.226 4.226 15 C -0.034 4.034 16 H 0.114 0.886 17 N -0.301 5.301 18 C -0.070 4.070 19 C -0.138 4.138 20 C -0.029 4.029 21 C -0.638 4.638 22 H 0.067 0.933 23 C -0.191 4.191 24 N -0.552 5.552 25 Si 0.900 3.100 26 H -0.215 1.215 27 H -0.210 1.210 28 H -0.215 1.215 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.160 0.840 45 H 0.084 0.916 46 H 0.041 0.959 47 H 0.065 0.935 48 H 0.076 0.924 49 H 0.025 0.975 50 H 0.022 0.978 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.457 5.096 -29.875 30.406 hybrid contribution 0.641 -0.577 -1.987 2.166 sum -1.816 4.519 -31.862 32.232 Atomic orbital electron populations 1.21249 0.92042 1.01744 1.01729 1.22259 0.97402 0.94169 0.92971 1.21724 0.99663 0.95551 1.02292 1.23770 0.93774 0.96661 0.84768 0.89791 1.88049 1.32872 1.90116 1.16720 1.21333 0.92640 0.99739 0.83920 1.19634 0.99029 0.93754 0.96337 1.21094 0.96639 0.96647 0.97323 1.21167 0.97826 0.99208 0.95959 1.21205 0.99702 0.93034 0.99522 1.21155 0.97652 0.97236 0.98176 1.21074 0.97074 0.98454 0.95118 1.24234 1.02802 0.97935 0.97627 1.22833 0.96678 0.94995 0.88920 0.88576 1.60386 1.14383 1.51256 1.04113 1.22156 0.96477 0.97924 0.90415 1.21487 0.97701 1.00550 0.94088 1.19196 0.95732 0.95262 0.92701 1.22095 0.94599 1.49829 0.97248 0.93285 1.25868 0.98625 0.94066 1.00552 1.70754 1.02967 1.46366 1.35129 0.83509 0.74528 0.76407 0.75539 1.21521 1.21016 1.21466 0.91298 0.93155 0.92709 0.93090 0.92719 0.91683 0.92609 0.92636 0.85957 0.85915 0.86047 0.85946 0.85980 0.91564 0.89052 0.84002 0.91621 0.95890 0.93537 0.92380 0.97511 0.97775 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 7.75 37.16 0.29 -1.01 16 2 C -0.07 -0.74 1.35 -153.69 -0.21 -0.94 16 3 C -0.13 -1.36 9.19 37.15 0.34 -1.01 16 4 C 0.07 0.69 3.70 -25.92 -0.10 0.60 16 5 H 0.08 0.73 7.72 -51.93 -0.40 0.33 16 6 O -0.36 -3.89 9.43 -35.23 -0.33 -4.22 16 7 C 0.10 0.87 5.92 36.00 0.21 1.08 16 8 C -0.09 -0.79 5.51 -104.62 -0.58 -1.37 16 9 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 10 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 11 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 12 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 13 C -0.10 -0.83 9.70 -39.58 -0.38 -1.21 16 14 C -0.19 -2.05 7.19 -25.92 -0.19 -2.23 16 15 C 0.08 0.94 3.60 -66.90 -0.24 0.69 16 16 H 0.10 1.17 7.85 -51.93 -0.41 0.76 16 17 N -0.67 -9.75 5.58 -105.87 -0.59 -10.34 16 18 C 0.06 1.02 5.55 -3.82 -0.02 1.00 16 19 C -0.10 -2.13 5.41 -26.73 -0.14 -2.27 16 20 C 0.01 0.23 4.28 -27.89 -0.12 0.11 16 21 C -0.60 -17.59 9.11 -34.44 -0.31 -17.90 16 22 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 23 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 24 N -0.92 -28.65 13.65 55.43 0.76 -27.90 16 25 Si 1.07 25.92 29.90 -169.99 -5.08 20.83 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.67 7.19 -51.93 -0.37 0.30 16 32 H 0.05 0.45 7.94 -51.93 -0.41 0.04 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 37 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 39 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.09 1.07 7.34 -51.93 -0.38 0.69 16 44 H 0.34 4.82 8.05 -39.29 -0.32 4.50 16 45 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.01 0.18 8.01 -51.92 -0.42 -0.23 16 50 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 51 H 0.27 8.35 7.22 -40.82 -0.29 8.05 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -32.03 409.87 -11.55 -43.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -9.36 Total: 1.23 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -3.12 Total: -29.36 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.17 Total: -38.24 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.33 Total: -4.22 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.03 -11.55 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182324924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.020 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds