Wall clock time and date at job start Tue Mar 31 2020 11:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99608 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00148 * 159.26895 * 7 2 1 9 9 N 1.36934 * 120.00099 * 339.26715 * 7 2 1 10 10 C 1.46502 * 120.00185 * 321.59637 * 9 7 2 11 11 C 1.52995 * 109.47319 * 270.00429 * 10 9 7 12 12 C 1.53000 * 109.47536 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47033 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.35907 * 116.99859 * 180.02562 * 15 14 13 17 17 C 1.38734 * 120.05587 * 359.72646 * 16 15 14 18 18 C 1.38143 * 119.94089 * 179.74621 * 17 16 15 19 19 C 1.38268 * 120.05518 * 0.50353 * 18 17 16 20 20 C 1.38264 * 120.11334 * 359.77064 * 19 18 17 21 21 C 1.38147 * 120.05488 * 359.97438 * 20 19 18 22 22 C 1.46503 * 120.00329 * 141.60262 * 9 7 2 23 23 C 1.54267 * 110.03404 * 62.54308 * 22 9 7 24 24 C 1.54964 * 104.16155 * 217.14345 * 23 22 9 25 25 C 1.54891 * 102.78000 * 37.88701 * 24 23 22 26 26 C 1.53885 * 110.02857 * 305.33081 * 22 9 7 27 27 H 0.96997 * 120.00528 * 355.03445 * 1 2 3 28 28 H 1.09000 * 109.46771 * 29.99976 * 10 9 7 29 29 H 1.08998 * 109.46871 * 149.99935 * 10 9 7 30 30 H 1.09002 * 109.47335 * 299.99562 * 11 10 9 31 31 H 1.09004 * 109.47404 * 59.99512 * 11 10 9 32 32 H 1.09002 * 109.46603 * 300.00197 * 12 11 10 33 33 H 1.09004 * 109.47019 * 59.99464 * 12 11 10 34 34 H 1.09000 * 109.47184 * 299.99866 * 13 12 11 35 35 H 1.09004 * 109.47131 * 59.99917 * 13 12 11 36 36 H 1.09002 * 109.47776 * 300.00321 * 14 13 12 37 37 H 1.09004 * 109.46954 * 60.00146 * 14 13 12 38 38 H 1.07994 * 120.02765 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97351 * 180.27916 * 18 17 16 40 40 H 1.08005 * 119.94404 * 179.74465 * 19 18 17 41 41 H 1.08002 * 119.97116 * 179.97438 * 20 19 18 42 42 H 1.08003 * 120.02468 * 179.97438 * 21 20 19 43 43 H 1.08997 * 110.02248 * 183.94076 * 22 9 7 44 44 H 1.08998 * 110.48761 * 335.78596 * 23 22 9 45 45 H 1.09000 * 110.48226 * 98.42973 * 23 22 9 46 46 H 1.09006 * 110.71654 * 279.57657 * 24 23 22 47 47 H 1.09000 * 110.92813 * 156.30019 * 24 23 22 48 48 H 1.09000 * 110.48504 * 203.40685 * 25 24 23 49 49 H 1.08996 * 110.59748 * 80.81662 * 25 24 23 50 50 H 1.08996 * 110.02864 * 238.57449 * 26 22 9 51 51 H 1.09001 * 110.02882 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3306 9 7 1.3922 -2.3494 0.4209 10 6 0.4699 -2.3101 1.5585 11 6 1.2463 -2.5583 2.8533 12 6 0.2833 -2.5166 4.0415 13 6 1.0596 -2.7655 5.3361 14 6 0.0967 -2.7231 6.5243 15 8 0.8218 -2.9549 7.7336 16 6 0.1092 -2.9506 8.8909 17 6 -1.2589 -2.7221 8.8635 18 6 -1.9818 -2.7234 10.0407 19 6 -1.3413 -2.9418 11.2464 20 6 0.0230 -3.1641 11.2769 21 6 0.7496 -3.1690 10.1020 22 6 1.6531 -3.6163 -0.2670 23 6 3.1427 -3.9940 -0.1317 24 6 3.4984 -4.6295 -1.4996 25 6 2.7000 -3.7577 -2.5004 26 6 1.3715 -3.4665 -1.7724 27 1 -0.4851 0.8368 0.0727 28 1 -0.0093 -1.3321 1.6041 29 1 -0.2901 -3.0819 1.4369 30 1 1.7256 -3.5362 2.8078 31 1 2.0064 -1.7865 2.9748 32 1 -0.1956 -1.5385 4.0868 33 1 -0.4771 -3.2882 3.9201 34 1 1.5382 -3.7437 5.2905 35 1 1.8203 -1.9942 5.4577 36 1 -0.3816 -1.7447 6.5698 37 1 -0.6642 -3.4942 6.4030 38 1 -1.7589 -2.5471 7.9224 39 1 -3.0476 -2.5501 10.0196 40 1 -1.9076 -2.9383 12.1661 41 1 0.5211 -3.3340 12.2201 42 1 1.8154 -3.3423 10.1264 43 1 1.0284 -4.4046 0.1531 44 1 3.7474 -3.1043 0.0440 45 1 3.2816 -4.7160 0.6730 46 1 3.1665 -5.6670 -1.5408 47 1 4.5685 -4.5599 -1.6948 48 1 2.5166 -4.3076 -3.4235 49 1 3.2318 -2.8295 -2.7096 50 1 0.6107 -4.1825 -2.0829 51 1 1.0402 -2.4513 -1.9910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187346652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:45 Heat of formation + Delta-G solvation = -23.861641 kcal Electronic energy + Delta-G solvation = -25942.085288 eV Core-core repulsion = 22419.963944 eV Total energy + Delta-G solvation = -3522.121344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.21366 -37.80807 -37.61858 -35.48248 -33.82156 -31.40751 -31.10242 -30.27388 -29.18408 -27.79033 -26.58040 -25.56015 -23.54406 -22.68954 -21.96419 -20.89510 -20.34249 -19.84132 -18.98516 -18.31081 -16.36049 -16.25077 -16.19758 -15.85071 -15.33648 -14.84457 -14.62619 -14.49628 -14.18927 -13.75488 -13.57157 -13.34240 -13.20060 -12.81189 -12.58453 -12.46468 -12.04129 -11.88528 -11.73974 -11.49461 -11.21744 -11.09147 -10.91741 -10.84468 -10.69168 -10.57136 -10.38735 -10.34785 -10.27172 -10.19394 -10.10768 -10.02251 -9.59684 -9.48306 -9.38609 -9.22129 -8.40529 -8.36930 -6.50731 -5.69894 -3.34001 1.12367 1.25626 3.09452 3.36524 3.46268 3.48554 3.59214 4.51485 4.61220 4.68077 4.90492 4.92580 4.96735 5.16002 5.18424 5.28699 5.31198 5.37828 5.42155 5.47084 5.52897 5.55203 5.65578 5.76285 5.80440 5.93562 6.11006 6.12752 6.19789 6.20696 6.27500 6.31164 6.31317 6.34888 6.37577 6.46468 6.54767 6.58931 6.59886 6.63325 6.68763 6.82484 6.87607 6.92545 7.06787 7.19077 7.29660 7.31675 7.44884 7.75607 7.88448 8.58579 9.26258 9.88775 10.47565 11.24991 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.002324 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.819386 B =12043.105315 C =13089.879135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.010 3.990 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.242 4.242 8 H 0.059 0.941 9 N -0.579 5.579 10 C 0.147 3.853 11 C -0.131 4.131 12 C -0.112 4.112 13 C -0.116 4.116 14 C 0.059 3.941 15 O -0.316 6.316 16 C 0.135 3.865 17 C -0.211 4.211 18 C -0.080 4.080 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.157 4.157 22 C 0.171 3.829 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.251 0.749 28 H 0.091 0.909 29 H 0.019 0.981 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.061 0.939 50 H 0.039 0.961 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 -7.797 15.315 17.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.077 0.923 9 N -0.298 5.298 10 C 0.021 3.979 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.016 4.016 15 O -0.229 6.229 16 C 0.089 3.911 17 C -0.229 4.229 18 C -0.099 4.099 19 C -0.184 4.184 20 C -0.101 4.101 21 C -0.176 4.176 22 C 0.063 3.937 23 C -0.174 4.174 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.171 4.171 27 H 0.061 0.939 28 H 0.109 0.891 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.460 -7.679 15.182 17.076 hybrid contribution 0.161 0.955 0.006 0.969 sum -1.298 -6.723 15.188 16.660 Atomic orbital electron populations 1.70081 1.05414 1.25676 1.51725 1.25130 0.94894 0.98491 1.00412 0.86477 0.79920 0.84669 0.77237 1.20163 1.21807 1.21595 1.18929 0.93490 0.85488 1.39298 0.92312 1.43949 1.51906 1.03245 1.30740 1.20905 0.90740 1.02063 0.84183 1.22175 0.98751 1.00632 0.95579 1.21470 0.98677 1.01609 0.93238 1.21613 0.98343 1.03275 0.92095 1.23011 0.95622 1.00735 0.82218 1.86091 1.37411 1.86172 1.13253 1.19111 0.90381 0.95004 0.86600 1.21351 0.93454 1.08254 0.99888 1.20969 0.99706 0.97194 0.91984 1.21046 0.94876 1.04510 0.97939 1.20960 0.94070 0.97691 0.97337 1.20484 1.00709 1.06429 0.89957 1.21036 0.92748 0.88658 0.91223 1.22857 0.99936 0.99680 0.94947 1.22443 0.98648 0.98315 0.96701 1.22251 0.97450 0.98945 0.96881 1.22551 0.95281 1.02473 0.96750 0.93907 0.89098 0.96226 0.93864 0.92257 0.91927 0.92487 0.91183 0.90968 0.91965 0.92074 0.85306 0.85872 0.86081 0.85526 0.85270 0.93654 0.90901 0.93638 0.92770 0.93005 0.93513 0.92037 0.94244 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 11.48 55.49 0.64 -24.05 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.89 21.21 29.61 -169.99 -5.03 16.17 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.28 7.75 -15.06 -0.12 -6.39 16 8 H 0.06 1.56 6.94 -52.48 -0.36 1.20 16 9 N -0.58 -13.67 2.38 -164.39 -0.39 -14.06 16 10 C 0.15 3.28 5.28 -4.04 -0.02 3.26 16 11 C -0.13 -2.45 5.54 -26.73 -0.15 -2.60 16 12 C -0.11 -1.69 5.21 -26.73 -0.14 -1.83 16 13 C -0.12 -1.55 5.58 -26.73 -0.15 -1.70 16 14 C 0.06 0.71 4.74 37.16 0.18 0.89 16 15 O -0.32 -4.24 10.14 -19.45 -0.20 -4.43 16 16 C 0.13 1.66 6.69 -39.22 -0.26 1.39 16 17 C -0.21 -2.31 9.04 -39.43 -0.36 -2.66 16 18 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 19 C -0.17 -1.45 10.04 -39.56 -0.40 -1.85 16 20 C -0.08 -0.74 10.04 -39.60 -0.40 -1.14 16 21 C -0.16 -1.70 9.99 -39.43 -0.39 -2.09 16 22 C 0.17 3.53 3.42 -66.81 -0.23 3.30 16 23 C -0.13 -2.49 6.43 -25.03 -0.16 -2.65 16 24 C -0.12 -1.98 6.91 -24.70 -0.17 -2.15 16 25 C -0.12 -2.05 6.83 -25.07 -0.17 -2.22 16 26 C -0.13 -2.65 6.25 -25.61 -0.16 -2.81 16 27 H 0.25 6.80 8.32 -40.82 -0.34 6.46 16 28 H 0.09 2.30 5.55 -51.93 -0.29 2.01 16 29 H 0.02 0.42 7.90 -51.93 -0.41 0.01 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 37 H 0.06 0.67 7.67 -51.93 -0.40 0.28 16 38 H 0.13 1.28 6.30 -52.49 -0.33 0.95 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 42 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 44 H 0.07 1.50 6.64 -51.93 -0.34 1.16 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 2.05 7.17 -51.93 -0.37 1.68 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -28.02 401.56 -11.73 -39.75 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -9.21 Total: 2.79 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.58 Total: -22.22 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.25 Total: -38.12 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.20 Total: -4.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.02 -11.73 -39.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187346652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.886 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds