Wall clock time and date at job start Tue Mar 31 2020 11:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99881 * 2 1 4 4 H 1.48496 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46880 * 299.99893 * 3 2 1 6 6 H 1.48504 * 109.46924 * 59.99608 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00148 * 159.26895 * 7 2 1 9 9 N 1.36934 * 120.00099 * 339.26715 * 7 2 1 10 10 C 1.46502 * 120.00185 * 321.59637 * 9 7 2 11 11 C 1.52995 * 109.47319 * 270.00429 * 10 9 7 12 12 C 1.53000 * 109.47536 * 179.97438 * 11 10 9 13 13 C 1.52996 * 109.47454 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47033 * 179.97438 * 13 12 11 15 15 O 1.42898 * 109.47055 * 180.02562 * 14 13 12 16 16 C 1.35907 * 116.99859 * 180.02562 * 15 14 13 17 17 C 1.38734 * 120.05587 * 359.72646 * 16 15 14 18 18 C 1.38143 * 119.94089 * 179.74621 * 17 16 15 19 19 C 1.38268 * 120.05518 * 0.50353 * 18 17 16 20 20 C 1.38264 * 120.11334 * 359.77064 * 19 18 17 21 21 C 1.38147 * 120.05488 * 359.97438 * 20 19 18 22 22 C 1.46503 * 120.00329 * 141.60262 * 9 7 2 23 23 C 1.54267 * 110.03404 * 62.54308 * 22 9 7 24 24 C 1.54964 * 104.16155 * 217.14345 * 23 22 9 25 25 C 1.54891 * 102.78000 * 37.88701 * 24 23 22 26 26 C 1.53885 * 110.02857 * 305.33081 * 22 9 7 27 27 H 0.96997 * 120.00528 * 355.03445 * 1 2 3 28 28 H 1.09000 * 109.46771 * 29.99976 * 10 9 7 29 29 H 1.08998 * 109.46871 * 149.99935 * 10 9 7 30 30 H 1.09002 * 109.47335 * 299.99562 * 11 10 9 31 31 H 1.09004 * 109.47404 * 59.99512 * 11 10 9 32 32 H 1.09002 * 109.46603 * 300.00197 * 12 11 10 33 33 H 1.09004 * 109.47019 * 59.99464 * 12 11 10 34 34 H 1.09000 * 109.47184 * 299.99866 * 13 12 11 35 35 H 1.09004 * 109.47131 * 59.99917 * 13 12 11 36 36 H 1.09002 * 109.47776 * 300.00321 * 14 13 12 37 37 H 1.09004 * 109.46954 * 60.00146 * 14 13 12 38 38 H 1.07994 * 120.02765 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97351 * 180.27916 * 18 17 16 40 40 H 1.08005 * 119.94404 * 179.74465 * 19 18 17 41 41 H 1.08002 * 119.97116 * 179.97438 * 20 19 18 42 42 H 1.08003 * 120.02468 * 179.97438 * 21 20 19 43 43 H 1.08997 * 110.02248 * 183.94076 * 22 9 7 44 44 H 1.08998 * 110.48761 * 335.78596 * 23 22 9 45 45 H 1.09000 * 110.48226 * 98.42973 * 23 22 9 46 46 H 1.09006 * 110.71654 * 279.57657 * 24 23 22 47 47 H 1.09000 * 110.92813 * 156.30019 * 24 23 22 48 48 H 1.09000 * 110.48504 * 203.40685 * 25 24 23 49 49 H 1.08996 * 110.59748 * 80.81662 * 25 24 23 50 50 H 1.08996 * 110.02864 * 238.57449 * 26 22 9 51 51 H 1.09001 * 110.02882 * 359.97438 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0379 -1.2325 -0.3306 9 7 1.3922 -2.3494 0.4209 10 6 0.4699 -2.3101 1.5585 11 6 1.2463 -2.5583 2.8533 12 6 0.2833 -2.5166 4.0415 13 6 1.0596 -2.7655 5.3361 14 6 0.0967 -2.7231 6.5243 15 8 0.8218 -2.9549 7.7336 16 6 0.1092 -2.9506 8.8909 17 6 -1.2589 -2.7221 8.8635 18 6 -1.9818 -2.7234 10.0407 19 6 -1.3413 -2.9418 11.2464 20 6 0.0230 -3.1641 11.2769 21 6 0.7496 -3.1690 10.1020 22 6 1.6531 -3.6163 -0.2670 23 6 3.1427 -3.9940 -0.1317 24 6 3.4984 -4.6295 -1.4996 25 6 2.7000 -3.7577 -2.5004 26 6 1.3715 -3.4665 -1.7724 27 1 -0.4851 0.8368 0.0727 28 1 -0.0093 -1.3321 1.6041 29 1 -0.2901 -3.0819 1.4369 30 1 1.7256 -3.5362 2.8078 31 1 2.0064 -1.7865 2.9748 32 1 -0.1956 -1.5385 4.0868 33 1 -0.4771 -3.2882 3.9201 34 1 1.5382 -3.7437 5.2905 35 1 1.8203 -1.9942 5.4577 36 1 -0.3816 -1.7447 6.5698 37 1 -0.6642 -3.4942 6.4030 38 1 -1.7589 -2.5471 7.9224 39 1 -3.0476 -2.5501 10.0196 40 1 -1.9076 -2.9383 12.1661 41 1 0.5211 -3.3340 12.2201 42 1 1.8154 -3.3423 10.1264 43 1 1.0284 -4.4046 0.1531 44 1 3.7474 -3.1043 0.0440 45 1 3.2816 -4.7160 0.6730 46 1 3.1665 -5.6670 -1.5408 47 1 4.5685 -4.5599 -1.6948 48 1 2.5166 -4.3076 -3.4235 49 1 3.2318 -2.8295 -2.7096 50 1 0.6107 -4.1825 -2.0829 51 1 1.0402 -2.4513 -1.9910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187346652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:44 Heat of formation + Delta-G solvation = -34.506210 kcal Electronic energy + Delta-G solvation = -25942.546872 eV Core-core repulsion = 22419.963944 eV Total energy + Delta-G solvation = -3522.582927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04767 -39.39588 -38.50078 -36.91529 -35.38308 -33.09071 -32.01314 -31.39436 -30.28012 -29.30455 -28.19063 -27.11129 -24.92181 -23.62330 -23.01113 -22.03271 -21.83983 -21.26666 -20.71606 -19.15627 -18.09194 -17.39105 -17.02032 -17.01827 -16.67440 -16.48084 -16.09335 -15.68235 -15.35708 -15.01812 -14.76838 -14.59094 -14.32521 -14.16362 -14.00684 -13.80527 -13.29466 -13.18953 -12.99110 -12.82697 -12.74824 -12.48788 -12.45701 -12.16779 -12.03277 -11.97203 -11.81020 -11.75261 -11.71844 -11.65690 -11.59572 -11.48684 -11.22876 -11.17526 -11.08944 -10.42062 -9.95690 -9.17465 -8.47016 -7.69897 -5.38141 0.38877 0.49125 1.42453 1.47404 1.55431 2.19231 2.54206 2.84766 3.29402 3.63743 3.84254 3.90267 3.95596 4.00600 4.04382 4.07331 4.21260 4.25605 4.29937 4.32412 4.38510 4.50266 4.56513 4.67186 4.71181 4.73871 4.75023 4.78940 4.93486 4.96116 4.97853 5.01848 5.04522 5.08751 5.10848 5.22991 5.25605 5.28470 5.34341 5.37334 5.41654 5.48532 5.57293 5.59835 5.62862 5.64497 5.72486 5.80481 5.88050 5.94838 6.45544 6.56248 7.27097 7.98395 8.49872 9.19858 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.002324 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.819386 B =12043.105315 C =13089.879135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.037 4.037 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.233 4.233 8 H 0.050 0.950 9 N -0.594 5.594 10 C 0.148 3.852 11 C -0.116 4.116 12 C -0.102 4.102 13 C -0.107 4.107 14 C 0.063 3.937 15 O -0.334 6.334 16 C 0.105 3.895 17 C -0.224 4.224 18 C -0.087 4.087 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.173 4.173 22 C 0.161 3.839 23 C -0.129 4.129 24 C -0.111 4.111 25 C -0.113 4.113 26 C -0.129 4.129 27 H 0.246 0.754 28 H 0.059 0.941 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.132 0.868 43 H 0.054 0.946 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.044 0.956 50 H 0.053 0.947 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -9.531 16.711 19.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.234 4.234 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.223 1.223 6 H -0.218 1.218 7 C -0.364 4.364 8 H 0.067 0.933 9 N -0.314 5.314 10 C 0.022 3.978 11 C -0.156 4.156 12 C -0.140 4.140 13 C -0.145 4.145 14 C -0.011 4.011 15 O -0.249 6.249 16 C 0.060 3.940 17 C -0.243 4.243 18 C -0.105 4.105 19 C -0.183 4.183 20 C -0.101 4.101 21 C -0.192 4.192 22 C 0.054 3.946 23 C -0.168 4.168 24 C -0.149 4.149 25 C -0.151 4.151 26 C -0.168 4.168 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.151 0.849 39 H 0.163 0.837 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.150 0.850 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.197 -9.431 16.585 19.116 hybrid contribution 0.045 1.428 -0.387 1.481 sum -1.152 -8.003 16.198 18.104 Atomic orbital electron populations 1.70189 1.06435 1.25784 1.53600 1.25683 0.95492 1.00858 1.01322 0.85646 0.79120 0.81673 0.76666 1.19583 1.22257 1.21785 1.18982 0.93053 0.86536 1.37862 0.93263 1.44162 1.51836 1.03711 1.31646 1.20847 0.91041 1.00395 0.85554 1.21921 0.98358 1.00055 0.95233 1.21329 0.98218 1.01810 0.92659 1.21444 0.98121 1.03058 0.91828 1.22903 0.95215 1.01376 0.81630 1.86030 1.38208 1.86793 1.13839 1.19415 0.91172 0.96857 0.86540 1.21525 0.93182 1.08661 1.00891 1.21316 1.00878 0.96588 0.91730 1.21451 0.95021 1.02986 0.98803 1.21327 0.94405 0.96593 0.97745 1.20740 1.01255 1.06881 0.90281 1.21278 0.94501 0.87529 0.91267 1.22734 0.97552 0.99205 0.97305 1.22408 0.99550 0.98932 0.94035 1.22216 0.95734 0.98991 0.98186 1.22465 0.97308 1.00036 0.97036 0.94418 0.92267 0.95874 0.93066 0.94550 0.92669 0.90957 0.90795 0.91990 0.91718 0.90846 0.84931 0.83707 0.83349 0.82828 0.84965 0.92787 0.93503 0.92020 0.90310 0.91253 0.90876 0.93712 0.92808 0.94281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.91 11.48 21.65 0.25 -52.66 16 2 C -0.04 -2.02 4.96 84.86 0.42 -1.60 16 3 Si 0.94 44.85 29.61 68.60 2.03 46.88 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.23 -12.45 7.75 84.03 0.65 -11.80 16 8 H 0.05 2.69 6.94 -2.91 -0.02 2.67 16 9 N -0.59 -28.60 2.38 -674.00 -1.60 -30.20 16 10 C 0.15 6.71 5.28 86.38 0.46 7.17 16 11 C -0.12 -4.36 5.54 30.59 0.17 -4.19 16 12 C -0.10 -3.06 5.21 30.59 0.16 -2.90 16 13 C -0.11 -2.83 5.58 30.59 0.17 -2.65 16 14 C 0.06 1.51 4.74 71.98 0.34 1.86 16 15 O -0.33 -8.98 10.14 -92.50 -0.94 -9.92 16 16 C 0.11 2.55 6.69 22.51 0.15 2.70 16 17 C -0.22 -4.72 9.04 22.37 0.20 -4.52 16 18 C -0.09 -1.48 10.04 22.25 0.22 -1.25 16 19 C -0.16 -2.46 10.04 22.28 0.22 -2.23 16 20 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 21 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 22 C 0.16 6.58 3.42 45.72 0.16 6.73 16 23 C -0.13 -4.57 6.43 31.70 0.20 -4.37 16 24 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 25 C -0.11 -3.77 6.83 31.67 0.22 -3.55 16 26 C -0.13 -5.18 6.25 31.32 0.20 -4.98 16 27 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 28 H 0.06 3.12 5.55 -2.39 -0.01 3.11 16 29 H 0.02 1.00 7.90 -2.39 -0.02 0.99 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.51 8.14 -2.38 -0.02 1.50 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.49 7.65 -2.39 -0.02 1.47 16 37 H 0.07 1.55 7.67 -2.38 -0.02 1.53 16 38 H 0.13 2.55 6.30 -2.91 -0.02 2.53 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 43 H 0.05 2.09 7.81 -2.39 -0.02 2.07 16 44 H 0.05 1.91 6.64 -2.39 -0.02 1.89 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 Total: -1.00 -62.56 401.56 5.21 -57.35 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.86 Total: 21.67 kcal Atomic # 6 Polarization: -37.73 SS G_CDS: 4.61 Total: -33.12 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -1.36 Total: -82.86 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.94 Total: -9.92 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -62.56 5.21 -57.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187346652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.844 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds