Wall clock time and date at job start Tue Mar 31 2020 11:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46674 * 2 1 4 4 C 1.38260 * 120.00106 * 265.02244 * 3 2 1 5 5 C 1.38212 * 120.00041 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.00085 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99784 * 0.52159 * 6 5 4 8 8 C 1.38214 * 120.00231 * 84.99924 * 3 2 1 9 9 C 1.50703 * 119.99514 * 0.02562 * 8 3 2 10 10 C 1.50697 * 109.47165 * 85.02274 * 9 8 3 11 11 O 1.21275 * 120.00324 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99478 * 179.97438 * 10 9 8 13 13 C 1.46493 * 120.00451 * 0.02562 * 12 10 9 14 14 C 1.50700 * 109.47272 * 89.99696 * 13 12 10 15 15 H 1.07995 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99987 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00131 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99789 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47266 * 60.00158 * 18 16 14 20 20 H 1.48507 * 109.46932 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47464 * 300.00101 * 18 16 14 22 22 C 1.46498 * 119.99613 * 179.97438 * 12 10 9 23 23 C 1.52999 * 109.47108 * 90.00392 * 22 12 10 24 24 C 1.52998 * 109.47293 * 179.97438 * 23 22 12 25 25 C 1.53003 * 109.47228 * 65.00098 * 24 23 22 26 26 C 1.53006 * 109.47300 * 184.99973 * 24 23 22 27 27 H 1.09001 * 109.47450 * 299.99868 * 1 2 3 28 28 H 1.08997 * 109.47200 * 60.00398 * 1 2 3 29 29 H 1.09005 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47450 * 240.00132 * 2 1 3 31 31 H 1.08997 * 109.47200 * 119.99602 * 2 1 3 32 32 H 1.08001 * 119.99581 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.99477 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.99823 * 180.27809 * 6 5 4 35 35 H 1.08002 * 120.00200 * 179.76459 * 7 6 5 36 36 H 1.09007 * 109.46568 * 205.02353 * 9 8 3 37 37 H 1.09002 * 109.47211 * 325.01705 * 9 8 3 38 38 H 1.09002 * 109.47484 * 209.99651 * 13 12 10 39 39 H 1.09004 * 109.47454 * 330.00022 * 13 12 10 40 40 H 0.97004 * 120.00023 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.47643 * 210.00365 * 22 12 10 42 42 H 1.08998 * 109.47488 * 330.00504 * 22 12 10 43 43 H 1.09000 * 109.47065 * 299.99953 * 23 22 12 44 44 H 1.09006 * 109.47186 * 59.99762 * 23 22 12 45 45 H 1.08998 * 109.47136 * 304.99603 * 24 23 22 46 46 H 1.09001 * 109.46935 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.46926 * 299.99739 * 25 24 23 48 48 H 1.08999 * 109.47048 * 60.00043 * 25 24 23 49 49 H 1.09000 * 109.47108 * 59.99652 * 26 24 23 50 50 H 1.09000 * 109.47183 * 180.02562 * 26 24 23 51 51 H 1.08999 * 109.47003 * 300.00612 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8207 3.3413 -1.1929 6 6 2.9474 4.0297 -0.0006 7 6 2.6243 3.4110 1.1923 8 6 2.1642 2.1072 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9862 0.6384 2.9876 11 8 4.0161 0.6188 2.3475 12 7 2.8968 -0.0519 4.1418 13 6 1.6526 -0.0287 4.9147 14 6 0.7603 -1.1565 4.4644 15 1 1.0872 -1.8236 3.6805 16 6 -0.4738 -1.3361 5.0525 17 7 -0.8724 -0.5229 6.0060 18 14 -1.5801 -2.7338 4.4937 19 1 -0.8878 -4.0297 4.7096 20 1 -2.8413 -2.7103 5.2774 21 1 -1.8904 -2.5729 3.0504 22 6 4.0436 -0.8262 4.6228 23 6 4.9167 0.0570 5.5164 24 6 6.1140 -0.7519 6.0193 25 6 7.0042 -1.1350 4.8353 26 6 6.9189 0.0910 7.0107 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.2575 1.5017 -2.1246 33 1 3.0768 3.8235 -2.1248 34 1 3.3027 5.0496 -0.0011 35 1 2.7269 3.9474 2.1241 36 1 1.5420 2.1905 3.2320 37 1 0.9584 0.7679 2.3354 38 1 1.8807 -0.1466 5.9741 39 1 1.1440 0.9223 4.7563 40 1 -1.7405 -0.6495 6.4199 41 1 3.6890 -1.6837 5.1947 42 1 4.6296 -1.1742 3.7722 43 1 5.2714 0.9144 4.9445 44 1 4.3307 0.4050 6.3671 45 1 5.7596 -1.6557 6.5149 46 1 7.8575 -1.7109 5.1937 47 1 6.4309 -1.7356 4.1291 48 1 7.3587 -0.2312 4.3398 49 1 6.2847 0.3640 7.8541 50 1 7.7721 -0.4851 7.3686 51 1 7.2732 0.9949 6.5152 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188263157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:51 Heat of formation + Delta-G solvation = -49.651519 kcal Electronic energy + Delta-G solvation = -27658.882607 eV Core-core repulsion = 24135.642930 eV Total energy + Delta-G solvation = -3523.239677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84293 -38.54652 -36.48595 -34.68448 -33.97468 -32.57080 -32.16218 -29.52394 -29.08997 -27.28435 -27.01062 -26.60669 -23.59403 -23.19648 -22.82503 -21.52958 -20.23286 -19.73024 -18.22491 -16.66817 -16.26361 -16.13865 -15.62226 -15.34556 -14.94324 -14.68256 -14.43983 -14.14080 -13.62033 -13.48969 -13.30324 -13.23278 -12.98468 -12.66848 -12.56464 -12.38946 -12.19491 -12.07701 -11.80102 -11.70335 -11.46477 -11.44165 -11.28360 -11.03781 -10.99204 -10.93700 -10.72893 -10.67158 -10.47555 -10.42928 -10.32077 -10.25091 -9.99838 -9.74525 -9.07251 -8.58762 -8.46708 -8.20786 -7.67241 -6.19935 -4.27603 1.67258 1.70748 3.22196 3.27787 3.29556 3.47034 3.87446 4.18352 4.33741 5.04311 5.06441 5.07806 5.12994 5.14929 5.16347 5.23660 5.26342 5.45779 5.51026 5.62896 5.71086 5.74009 5.78398 5.80850 5.85330 5.85856 5.91992 5.99220 6.01776 6.04668 6.13796 6.17128 6.18404 6.28699 6.31271 6.34807 6.37621 6.41637 6.51067 6.62902 6.66066 6.71359 6.76512 6.79793 6.80574 7.05181 7.17253 7.32785 7.56910 7.75193 8.04502 8.37263 8.78319 9.07257 9.40759 10.86554 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007198 B = 0.005949 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3889.280151 B = 4705.526356 C = 7628.913314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.128 4.128 7 C -0.108 4.108 8 C -0.048 4.048 9 C -0.105 4.105 10 C 0.520 3.480 11 O -0.566 6.566 12 N -0.597 5.597 13 C 0.237 3.763 14 C -0.538 4.538 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.120 3.880 23 C -0.127 4.127 24 C -0.094 4.094 25 C -0.146 4.146 26 C -0.144 4.144 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.266 0.734 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.047 0.953 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.053 0.947 50 H 0.050 0.950 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 4.207 -6.276 10.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.061 4.061 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.048 4.048 9 C -0.145 4.145 10 C 0.309 3.691 11 O -0.447 6.447 12 N -0.327 5.327 13 C 0.117 3.883 14 C -0.576 4.576 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.166 4.166 24 C -0.113 4.113 25 C -0.204 4.204 26 C -0.202 4.202 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.779 4.223 -6.448 10.951 hybrid contribution -0.795 -0.732 -0.045 1.082 sum 6.984 3.491 -6.493 10.155 Atomic orbital electron populations 1.21748 0.94636 1.01924 1.02004 1.20558 0.96120 0.92785 1.03025 1.19710 0.98029 0.95853 0.92537 1.20924 1.00635 0.95193 0.97195 1.20987 1.00922 0.94923 0.97700 1.20980 1.01412 0.99603 0.92659 1.20973 0.99043 0.94697 0.97926 1.19372 0.97906 0.93712 0.93851 1.20764 0.98914 1.00320 0.94475 1.20242 0.88513 0.79780 0.80595 1.90610 1.31650 1.65084 1.57359 1.48222 1.15036 1.46937 1.22483 1.19424 0.79500 0.97822 0.91569 1.21447 1.01211 1.13981 1.20975 0.92159 1.24919 0.97686 0.96300 0.94715 1.69907 1.20900 1.37255 1.24827 0.86631 0.79813 0.82557 0.78963 1.20154 1.21158 1.19936 1.21329 0.87287 0.93902 0.97804 1.21987 0.95876 0.99039 0.99654 1.21051 0.95442 0.98730 0.96068 1.21868 0.99061 1.01365 0.98067 1.21822 0.99609 0.99807 0.98949 0.91873 0.93072 0.92384 0.91610 0.90398 0.86617 0.86726 0.86643 0.86487 0.88688 0.86626 0.94690 0.94496 0.92465 0.90759 0.90941 0.92054 0.91919 0.91227 0.93357 0.92288 0.92806 0.92784 0.93093 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.72 37.16 0.36 -1.80 16 2 C -0.09 -1.40 5.38 -27.88 -0.15 -1.55 16 3 C -0.06 -1.01 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.76 9.68 -39.58 -0.38 -2.14 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.13 -1.79 10.05 -39.58 -0.40 -2.18 16 7 C -0.11 -1.71 9.68 -39.58 -0.38 -2.09 16 8 C -0.05 -0.83 4.37 -104.62 -0.46 -1.29 16 9 C -0.11 -1.96 3.71 -29.04 -0.11 -2.07 16 10 C 0.52 10.74 6.87 -10.99 -0.08 10.67 16 11 O -0.57 -12.71 15.61 5.56 0.09 -12.62 16 12 N -0.60 -12.34 2.46 -175.07 -0.43 -12.77 16 13 C 0.24 5.46 4.97 -5.20 -0.03 5.44 16 14 C -0.54 -13.51 9.28 -34.44 -0.32 -13.83 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -23.99 13.29 55.43 0.74 -23.25 16 18 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 C 0.12 2.21 5.16 -4.04 -0.02 2.19 16 23 C -0.13 -2.04 5.01 -26.73 -0.13 -2.17 16 24 C -0.09 -1.25 2.92 -90.62 -0.26 -1.51 16 25 C -0.15 -1.89 8.95 37.16 0.33 -1.55 16 26 C -0.14 -1.69 9.19 37.16 0.34 -1.34 16 27 H 0.06 1.01 6.80 -51.93 -0.35 0.65 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.08 1.44 6.42 -51.93 -0.33 1.10 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.11 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.09 1.68 7.31 -51.93 -0.38 1.30 16 37 H 0.12 2.26 5.48 -51.93 -0.28 1.97 16 38 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 39 H 0.04 0.88 6.44 -51.93 -0.33 0.54 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 42 H 0.07 1.36 5.85 -51.93 -0.30 1.06 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.81 6.57 -51.93 -0.34 0.46 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 406.64 15.07 6.13 6.13 Total: -1.00 -28.11 406.64 -10.27 -38.37 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -9.05 Total: 6.34 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.72 Total: -17.28 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.31 Total: -36.02 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.11 -10.27 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188263157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.279 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds