Wall clock time and date at job start Tue Mar 31 2020 11:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47196 * 2 1 4 4 C 1.38264 * 119.99825 * 266.41973 * 3 2 1 5 5 C 1.38218 * 119.99680 * 179.71985 * 4 3 2 6 6 C 1.38251 * 120.00179 * 0.27359 * 5 4 3 7 7 C 1.38223 * 120.00038 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.00424 * 86.59963 * 3 2 1 9 9 C 1.50703 * 119.99548 * 0.04636 * 8 3 2 10 10 C 1.50698 * 109.46926 * 83.22520 * 9 8 3 11 11 O 1.21281 * 120.00509 * 5.47191 * 10 9 8 12 12 N 1.34782 * 120.00039 * 185.47377 * 10 9 8 13 13 C 1.46493 * 119.99757 * 5.07898 * 12 10 9 14 14 C 1.50696 * 109.47228 * 90.00247 * 13 12 10 15 15 H 1.08001 * 120.00181 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00180 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46738 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47367 * 119.99551 * 18 16 14 21 21 H 1.48505 * 109.46870 * 239.99889 * 18 16 14 22 22 C 1.46504 * 119.99751 * 185.07737 * 12 10 9 23 23 C 1.53002 * 109.46873 * 90.43825 * 22 12 10 24 24 C 1.53004 * 109.47040 * 63.05434 * 23 22 12 25 25 C 1.53003 * 109.46797 * 183.04910 * 23 22 12 26 26 C 1.52997 * 109.47165 * 303.05107 * 23 22 12 27 27 H 1.08997 * 109.47818 * 299.99838 * 1 2 3 28 28 H 1.09007 * 109.47055 * 60.00599 * 1 2 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47818 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47127 * 119.99548 * 2 1 3 32 32 H 1.07993 * 119.99986 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.99677 * 180.24870 * 5 4 3 34 34 H 1.08002 * 120.00393 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.00117 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47162 * 203.21789 * 9 8 3 37 37 H 1.08991 * 109.47691 * 323.22228 * 9 8 3 38 38 H 1.09001 * 109.47101 * 210.00088 * 13 12 10 39 39 H 1.08994 * 109.47536 * 330.00031 * 13 12 10 40 40 H 0.96998 * 120.00310 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46912 * 210.43304 * 22 12 10 42 42 H 1.08991 * 109.47429 * 330.43233 * 22 12 10 43 43 H 1.08998 * 109.47340 * 59.99794 * 24 23 22 44 44 H 1.08999 * 109.47033 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.46940 * 299.99614 * 24 23 22 46 46 H 1.08995 * 109.46891 * 60.00581 * 25 23 22 47 47 H 1.08999 * 109.46839 * 180.02562 * 25 23 22 48 48 H 1.08998 * 109.47435 * 300.00115 * 25 23 22 49 49 H 1.09004 * 109.46811 * 65.68314 * 26 23 22 50 50 H 1.09001 * 109.47270 * 185.68219 * 26 23 22 51 51 H 1.09002 * 109.47278 * 305.68695 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3332 2.0476 -1.1951 5 6 2.7885 3.3527 -1.1954 6 6 2.9483 4.0294 -0.0005 7 6 2.6523 3.4010 1.1945 8 6 2.1958 2.0961 1.1948 9 6 1.8726 1.4111 2.4977 10 6 3.0494 0.5757 2.9314 11 8 4.0865 0.6169 2.3039 12 7 2.9495 -0.2173 4.0166 13 6 1.6657 -0.3530 4.7089 14 6 0.8916 -1.4997 4.1116 15 1 1.3135 -2.0702 3.2974 16 6 -0.3559 -1.8200 4.6039 17 7 -0.8700 -1.1251 5.5950 18 14 -1.3152 -3.2419 3.8640 19 1 -0.5219 -3.8581 2.7701 20 1 -1.5838 -4.2573 4.9138 21 1 -2.6025 -2.7404 3.3194 22 6 4.1249 -0.9436 4.5037 23 6 4.8670 -0.0838 5.5289 24 6 3.9622 0.1632 6.7378 25 6 6.1353 -0.8103 5.9811 26 6 5.2454 1.2553 4.8930 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.2087 1.5189 -2.1285 33 1 3.0197 3.8436 -2.1291 34 1 3.3044 5.0490 -0.0007 35 1 2.7775 3.9295 2.1280 36 1 1.6591 2.1611 3.2593 37 1 1.0012 0.7700 2.3648 38 1 1.8421 -0.5458 5.7671 39 1 1.0938 0.5683 4.5979 40 1 -1.7478 -1.3501 5.9411 41 1 3.8078 -1.8752 4.9724 42 1 4.7877 -1.1650 3.6673 43 1 3.6926 -0.7908 7.1908 44 1 4.4910 0.7753 7.4683 45 1 3.0587 0.6806 6.4156 46 1 6.7799 -0.9862 5.1200 47 1 6.6638 -0.1979 6.7118 48 1 5.8657 -1.7643 6.4342 49 1 4.3400 1.8169 4.6627 50 1 5.8604 1.8268 5.5882 51 1 5.8053 1.0763 3.9750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188284701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:56 Heat of formation + Delta-G solvation = -41.674796 kcal Electronic energy + Delta-G solvation = -28496.063074 eV Core-core repulsion = 24973.169293 eV Total energy + Delta-G solvation = -3522.893780 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.95262 -38.79912 -36.59717 -34.32058 -33.90750 -32.34866 -32.09469 -29.20234 -27.93478 -27.46072 -26.93447 -26.65033 -25.06302 -23.49937 -22.82434 -21.67213 -20.31592 -18.88708 -17.92600 -16.71279 -16.22655 -16.12008 -15.63934 -15.25907 -14.80818 -14.63993 -14.36441 -13.94538 -13.52820 -13.36964 -13.30819 -13.12993 -12.83442 -12.67278 -12.48328 -12.29938 -12.08342 -11.84280 -11.76230 -11.56477 -11.42858 -11.32892 -11.22718 -11.04205 -10.96730 -10.93550 -10.81545 -10.52839 -10.42033 -10.35931 -10.30361 -10.22468 -10.04097 -9.65765 -9.03211 -8.57554 -8.45814 -8.19637 -7.60824 -6.19272 -4.26281 1.67924 1.71355 3.19577 3.28966 3.32212 3.48277 3.89478 4.20106 4.34929 5.06111 5.07925 5.13907 5.20549 5.21969 5.23665 5.26573 5.35139 5.49004 5.59488 5.63956 5.77272 5.81465 5.87501 5.89502 5.91508 5.95981 6.00160 6.13062 6.17052 6.20199 6.20966 6.23198 6.33955 6.35139 6.37482 6.40777 6.50841 6.54299 6.58497 6.66136 6.69873 6.77060 6.80656 6.81158 6.90031 7.06325 7.19254 7.33478 7.59466 7.76886 8.06727 8.40032 8.80365 9.10004 9.42043 10.87017 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008718 B = 0.006334 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.854750 B = 4419.802744 C = 6830.686071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.061 4.061 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.047 4.047 9 C -0.107 4.107 10 C 0.523 3.477 11 O -0.564 6.564 12 N -0.593 5.593 13 C 0.232 3.768 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.891 5.891 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.131 3.869 23 C -0.085 4.085 24 C -0.141 4.141 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.049 0.951 50 H 0.040 0.960 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 5.904 -5.291 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.061 4.061 4 C -0.139 4.139 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.126 4.126 8 C -0.048 4.048 9 C -0.147 4.147 10 C 0.312 3.688 11 O -0.444 6.444 12 N -0.323 5.323 13 C 0.112 3.888 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.208 1.208 22 C 0.007 3.993 23 C -0.086 4.086 24 C -0.198 4.198 25 C -0.193 4.193 26 C -0.187 4.187 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.134 0.866 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.650 5.917 -5.472 10.449 hybrid contribution -0.756 -0.790 -0.166 1.106 sum 5.894 5.127 -5.638 9.634 Atomic orbital electron populations 1.21719 0.94623 1.01949 1.01844 1.20565 0.96168 0.92680 1.03134 1.19728 0.97942 0.95945 0.92501 1.20925 1.00685 0.95096 0.97205 1.20983 1.00936 0.94955 0.97666 1.20975 1.01457 0.99617 0.92633 1.20956 0.99140 0.94619 0.97875 1.19346 0.97931 0.93695 0.93805 1.20773 0.99467 0.99747 0.94689 1.20142 0.88498 0.80120 0.80068 1.90606 1.31234 1.67631 1.54947 1.48120 1.11673 1.44128 1.28391 1.19564 0.78382 0.97424 0.93462 1.21542 1.01638 1.15503 1.18672 0.92124 1.24904 0.97340 0.96551 0.94815 1.69921 1.17668 1.39847 1.25464 0.86557 0.79996 0.82373 0.79315 1.19600 1.20909 1.20794 1.21320 0.87455 0.94208 0.96318 1.20959 0.95241 0.96314 0.96070 1.21967 0.99729 1.01554 0.96529 1.21781 0.96840 1.00013 1.00704 1.21795 1.00889 0.95932 1.00065 0.91939 0.93195 0.92349 0.91682 0.90203 0.86635 0.86755 0.86682 0.86559 0.88940 0.86637 0.93797 0.94704 0.92624 0.90731 0.91095 0.92704 0.93790 0.91501 0.92870 0.92991 0.92744 0.93189 0.94047 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.74 37.15 0.36 -1.83 16 2 C -0.09 -1.44 5.39 -27.89 -0.15 -1.59 16 3 C -0.06 -1.01 5.13 -104.62 -0.54 -1.55 16 4 C -0.12 -1.77 9.69 -39.58 -0.38 -2.15 16 5 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 6 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 7 C -0.11 -1.68 9.67 -39.58 -0.38 -2.06 16 8 C -0.05 -0.81 4.38 -104.63 -0.46 -1.27 16 9 C -0.11 -1.96 3.59 -29.03 -0.10 -2.07 16 10 C 0.52 10.47 5.03 -10.98 -0.06 10.41 16 11 O -0.56 -12.24 14.06 5.56 0.08 -12.16 16 12 N -0.59 -11.88 1.99 -175.07 -0.35 -12.23 16 13 C 0.23 5.20 3.90 -5.20 -0.02 5.18 16 14 C -0.53 -13.31 9.26 -34.44 -0.32 -13.63 16 15 H 0.06 1.56 7.81 -52.49 -0.41 1.14 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -23.77 13.29 55.43 0.74 -23.04 16 18 Si 0.89 20.08 29.54 -169.99 -5.02 15.06 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.13 2.38 4.61 -4.04 -0.02 2.36 16 23 C -0.08 -1.33 0.85 -154.51 -0.13 -1.46 16 24 C -0.14 -2.22 7.35 37.16 0.27 -1.95 16 25 C -0.14 -1.79 8.47 37.16 0.31 -1.48 16 26 C -0.13 -2.08 7.15 37.16 0.27 -1.82 16 27 H 0.06 1.01 6.94 -51.93 -0.36 0.65 16 28 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.08 1.51 6.24 -51.93 -0.32 1.19 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.58 7.74 -51.93 -0.40 1.18 16 37 H 0.12 2.25 5.40 -51.93 -0.28 1.97 16 38 H 0.04 1.03 5.97 -51.93 -0.31 0.72 16 39 H 0.04 0.81 6.55 -51.93 -0.34 0.47 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 41 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 42 H 0.07 1.34 7.34 -51.93 -0.38 0.96 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 1.18 5.89 -51.93 -0.31 0.87 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.87 6.73 -51.93 -0.35 0.52 16 50 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.06 1.07 7.34 -51.93 -0.38 0.69 16 LS Contribution 395.73 15.07 5.96 5.96 Total: -1.00 -27.51 395.73 -9.72 -37.23 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.89 Total: 6.74 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.24 Total: -17.56 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.39 Total: -35.26 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.51 -9.72 -37.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188284701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.444 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds