Wall clock time and date at job start Tue Mar 31 2020 11:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47196 * 2 1 4 4 C 1.38264 * 119.99825 * 266.41973 * 3 2 1 5 5 C 1.38218 * 119.99680 * 179.71985 * 4 3 2 6 6 C 1.38251 * 120.00179 * 0.27359 * 5 4 3 7 7 C 1.38223 * 120.00038 * 359.97438 * 6 5 4 8 8 C 1.38210 * 120.00424 * 86.59963 * 3 2 1 9 9 C 1.50703 * 119.99548 * 0.04636 * 8 3 2 10 10 C 1.50698 * 109.46926 * 83.22520 * 9 8 3 11 11 O 1.21281 * 120.00509 * 5.47191 * 10 9 8 12 12 N 1.34782 * 120.00039 * 185.47377 * 10 9 8 13 13 C 1.46493 * 119.99757 * 5.07898 * 12 10 9 14 14 C 1.50696 * 109.47228 * 90.00247 * 13 12 10 15 15 H 1.08001 * 120.00181 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00180 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99940 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00156 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46738 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47367 * 119.99551 * 18 16 14 21 21 H 1.48505 * 109.46870 * 239.99889 * 18 16 14 22 22 C 1.46504 * 119.99751 * 185.07737 * 12 10 9 23 23 C 1.53002 * 109.46873 * 90.43825 * 22 12 10 24 24 C 1.53004 * 109.47040 * 63.05434 * 23 22 12 25 25 C 1.53003 * 109.46797 * 183.04910 * 23 22 12 26 26 C 1.52997 * 109.47165 * 303.05107 * 23 22 12 27 27 H 1.08997 * 109.47818 * 299.99838 * 1 2 3 28 28 H 1.09007 * 109.47055 * 60.00599 * 1 2 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47818 * 240.00162 * 2 1 3 31 31 H 1.08998 * 109.47127 * 119.99548 * 2 1 3 32 32 H 1.07993 * 119.99986 * 359.97438 * 4 3 2 33 33 H 1.07995 * 119.99677 * 180.24870 * 5 4 3 34 34 H 1.08002 * 120.00393 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.00117 * 179.97438 * 7 6 5 36 36 H 1.09004 * 109.47162 * 203.21789 * 9 8 3 37 37 H 1.08991 * 109.47691 * 323.22228 * 9 8 3 38 38 H 1.09001 * 109.47101 * 210.00088 * 13 12 10 39 39 H 1.08994 * 109.47536 * 330.00031 * 13 12 10 40 40 H 0.96998 * 120.00310 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46912 * 210.43304 * 22 12 10 42 42 H 1.08991 * 109.47429 * 330.43233 * 22 12 10 43 43 H 1.08998 * 109.47340 * 59.99794 * 24 23 22 44 44 H 1.08999 * 109.47033 * 179.97438 * 24 23 22 45 45 H 1.08995 * 109.46940 * 299.99614 * 24 23 22 46 46 H 1.08995 * 109.46891 * 60.00581 * 25 23 22 47 47 H 1.08999 * 109.46839 * 180.02562 * 25 23 22 48 48 H 1.08998 * 109.47435 * 300.00115 * 25 23 22 49 49 H 1.09004 * 109.46811 * 65.68314 * 26 23 22 50 50 H 1.09001 * 109.47270 * 185.68219 * 26 23 22 51 51 H 1.09002 * 109.47278 * 305.68695 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3332 2.0476 -1.1951 5 6 2.7885 3.3527 -1.1954 6 6 2.9483 4.0294 -0.0005 7 6 2.6523 3.4010 1.1945 8 6 2.1958 2.0961 1.1948 9 6 1.8726 1.4111 2.4977 10 6 3.0494 0.5757 2.9314 11 8 4.0865 0.6169 2.3039 12 7 2.9495 -0.2173 4.0166 13 6 1.6657 -0.3530 4.7089 14 6 0.8916 -1.4997 4.1116 15 1 1.3135 -2.0702 3.2974 16 6 -0.3559 -1.8200 4.6039 17 7 -0.8700 -1.1251 5.5950 18 14 -1.3152 -3.2419 3.8640 19 1 -0.5219 -3.8581 2.7701 20 1 -1.5838 -4.2573 4.9138 21 1 -2.6025 -2.7404 3.3194 22 6 4.1249 -0.9436 4.5037 23 6 4.8670 -0.0838 5.5289 24 6 3.9622 0.1632 6.7378 25 6 6.1353 -0.8103 5.9811 26 6 5.2454 1.2553 4.8930 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.2087 1.5189 -2.1285 33 1 3.0197 3.8436 -2.1291 34 1 3.3044 5.0490 -0.0007 35 1 2.7775 3.9295 2.1280 36 1 1.6591 2.1611 3.2593 37 1 1.0012 0.7700 2.3648 38 1 1.8421 -0.5458 5.7671 39 1 1.0938 0.5683 4.5979 40 1 -1.7478 -1.3501 5.9411 41 1 3.8078 -1.8752 4.9724 42 1 4.7877 -1.1650 3.6673 43 1 3.6926 -0.7908 7.1908 44 1 4.4910 0.7753 7.4683 45 1 3.0587 0.6806 6.4156 46 1 6.7799 -0.9862 5.1200 47 1 6.6638 -0.1979 6.7118 48 1 5.8657 -1.7643 6.4342 49 1 4.3400 1.8169 4.6627 50 1 5.8604 1.8268 5.5882 51 1 5.8053 1.0763 3.9750 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188284701.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:55 Heat of formation + Delta-G solvation = -52.041392 kcal Electronic energy + Delta-G solvation = -28496.512603 eV Core-core repulsion = 24973.169293 eV Total energy + Delta-G solvation = -3523.343310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40540 -40.10623 -38.02919 -36.03549 -35.12943 -34.23273 -33.38144 -30.39032 -29.56800 -28.95639 -28.12522 -28.06251 -26.54334 -24.82793 -24.56085 -22.89570 -21.54724 -20.27765 -19.46188 -18.61917 -17.83142 -17.42562 -17.01463 -16.75083 -16.32116 -16.10513 -15.81051 -15.26253 -14.82706 -14.73360 -14.60388 -14.44138 -14.33430 -14.11123 -13.85064 -13.78536 -13.55981 -13.23225 -13.02810 -13.02152 -12.81830 -12.71670 -12.64780 -12.62820 -12.48945 -12.45208 -12.16211 -12.04382 -11.94878 -11.68734 -11.66374 -11.53765 -11.50161 -11.44472 -10.72165 -10.48681 -9.63234 -9.41061 -9.30719 -8.17847 -6.31333 0.50726 0.56332 1.37918 1.42197 1.51546 1.85630 2.34614 2.48548 2.96012 3.12224 3.79714 3.84738 3.88739 3.92037 4.04034 4.07129 4.10894 4.15200 4.33154 4.39703 4.49279 4.58010 4.60377 4.62596 4.69609 4.74663 4.76573 4.81204 4.83407 4.90723 4.93232 4.99078 5.00903 5.05998 5.07242 5.11004 5.16689 5.22292 5.23606 5.30071 5.33808 5.38641 5.48626 5.53523 5.64448 5.65648 5.69823 5.84917 5.94659 6.11492 6.20369 6.63598 6.87304 7.36173 7.49768 8.87074 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008718 B = 0.006334 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.854750 B = 4419.802744 C = 6830.686071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C -0.081 4.081 4 C -0.126 4.126 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.122 4.122 8 C -0.073 4.073 9 C -0.099 4.099 10 C 0.525 3.475 11 O -0.580 6.580 12 N -0.594 5.594 13 C 0.250 3.750 14 C -0.540 4.540 15 H 0.048 0.952 16 C 0.027 3.973 17 N -0.917 5.917 18 Si 0.945 3.055 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.277 1.277 22 C 0.128 3.872 23 C -0.081 4.081 24 C -0.135 4.135 25 C -0.130 4.130 26 C -0.120 4.120 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.028 0.972 50 H 0.064 0.936 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.133 6.672 -6.396 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.121 4.121 3 C -0.081 4.081 4 C -0.144 4.144 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.140 4.140 8 C -0.073 4.073 9 C -0.138 4.138 10 C 0.314 3.686 11 O -0.462 6.462 12 N -0.324 5.324 13 C 0.129 3.871 14 C -0.578 4.578 15 H 0.066 0.934 16 C -0.173 4.173 17 N -0.557 5.557 18 Si 0.771 3.229 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.202 1.202 22 C 0.005 3.995 23 C -0.082 4.082 24 C -0.192 4.192 25 C -0.187 4.187 26 C -0.177 4.177 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.048 0.952 50 H 0.083 0.917 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.495 6.681 -6.574 12.002 hybrid contribution -0.974 -0.990 0.139 1.395 sum 6.521 5.692 -6.436 10.786 Atomic orbital electron populations 1.21671 0.93994 1.01910 1.01994 1.20490 0.96742 0.92916 1.01987 1.19851 0.99021 0.95963 0.93260 1.21232 1.00101 0.95869 0.97187 1.21421 0.99209 0.94432 0.98989 1.21359 1.00324 1.00924 0.91976 1.21166 0.99391 0.94174 0.99292 1.19369 0.99973 0.94721 0.93249 1.20651 0.97906 0.99288 0.95996 1.20393 0.88727 0.79904 0.79555 1.90575 1.32034 1.68267 1.55353 1.48086 1.11460 1.44423 1.28430 1.19194 0.79038 0.96027 0.92825 1.21678 1.02079 1.15885 1.18204 0.93418 1.25518 0.98101 0.98552 0.95135 1.69998 1.18100 1.41121 1.26471 0.85703 0.78816 0.79829 0.78593 1.19620 1.20503 1.20243 1.21447 0.86843 0.94535 0.96718 1.20935 0.96172 0.95956 0.95131 1.21887 0.98933 1.01438 0.96924 1.21735 0.95381 1.00323 1.01293 1.21692 1.00010 0.96094 0.99952 0.93769 0.90945 0.92440 0.90203 0.93805 0.84399 0.83292 0.83683 0.85923 0.88641 0.88489 0.94720 0.95906 0.92426 0.91382 0.91962 0.93077 0.91474 0.93972 0.92632 0.91024 0.92087 0.95248 0.91662 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.74 71.98 0.70 -3.55 16 2 C -0.08 -2.79 5.39 29.85 0.16 -2.63 16 3 C -0.08 -2.66 5.13 -19.86 -0.10 -2.77 16 4 C -0.13 -3.42 9.69 22.27 0.22 -3.20 16 5 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 6 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 7 C -0.12 -3.73 9.67 22.27 0.22 -3.52 16 8 C -0.07 -2.54 4.38 -19.87 -0.09 -2.63 16 9 C -0.10 -3.82 3.59 29.10 0.10 -3.71 16 10 C 0.52 21.97 5.03 87.66 0.44 22.41 16 11 O -0.58 -26.05 14.06 -3.03 -0.04 -26.09 16 12 N -0.59 -24.90 1.99 -826.18 -1.65 -26.55 16 13 C 0.25 11.75 3.90 85.63 0.33 12.08 16 14 C -0.54 -27.80 9.26 25.60 0.24 -27.57 16 15 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 16 C 0.03 1.42 5.46 84.66 0.46 1.89 16 17 N -0.92 -49.85 13.29 21.45 0.28 -49.57 16 18 Si 0.94 41.65 29.54 68.60 2.03 43.67 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 C 0.13 4.79 4.61 86.38 0.40 5.19 16 23 C -0.08 -2.51 0.85 -52.18 -0.04 -2.55 16 24 C -0.13 -4.21 7.35 71.98 0.53 -3.68 16 25 C -0.13 -3.20 8.47 71.98 0.61 -2.59 16 26 C -0.12 -3.82 7.15 71.98 0.51 -3.31 16 27 H 0.04 1.49 6.94 -2.39 -0.02 1.47 16 28 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.33 8.06 -2.39 -0.02 2.31 16 31 H 0.04 1.75 6.24 -2.39 -0.01 1.73 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 33 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 36 H 0.10 3.49 7.74 -2.38 -0.02 3.47 16 37 H 0.10 4.07 5.40 -2.39 -0.01 4.05 16 38 H 0.03 1.70 5.97 -2.39 -0.01 1.69 16 39 H 0.02 1.13 6.55 -2.39 -0.02 1.11 16 40 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.07 2.60 8.08 -2.39 -0.02 2.58 16 42 H 0.06 2.42 7.34 -2.39 -0.02 2.41 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.04 1.51 5.89 -2.39 -0.01 1.50 16 46 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.03 1.03 6.73 -2.38 -0.02 1.01 16 50 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 1.59 7.34 -2.39 -0.02 1.58 16 Total: -1.00 -59.97 395.73 6.64 -53.33 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.88 Total: 31.05 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 5.14 Total: -25.84 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.36 Total: -76.12 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.04 Total: -26.09 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -59.97 6.64 -53.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188284701.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.284 kcal (2) G-P(sol) polarization free energy of solvation -59.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds