Wall clock time and date at job start Tue Mar 31 2020 11:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47447 * 2 1 4 4 C 1.38253 * 120.00006 * 267.38124 * 3 2 1 5 5 C 1.38213 * 119.99964 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99981 * 359.74449 * 5 4 3 7 7 C 1.38214 * 119.99988 * 0.51345 * 6 5 4 8 8 C 1.38210 * 119.99647 * 87.35617 * 3 2 1 9 9 C 1.50700 * 120.00247 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47314 * 80.78123 * 9 8 3 11 11 O 1.21275 * 120.00027 * 13.45898 * 10 9 8 12 12 N 1.34774 * 119.99648 * 193.46308 * 10 9 8 13 13 C 1.46506 * 119.99820 * 186.22238 * 12 10 9 14 14 C 1.50703 * 109.46707 * 94.41267 * 13 12 10 15 15 H 1.08002 * 119.99973 * 4.77843 * 14 13 12 16 16 C 1.37871 * 119.99760 * 184.78793 * 14 13 12 17 17 N 1.31519 * 120.00245 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47213 * 119.99595 * 18 16 14 21 21 H 1.48497 * 109.47287 * 239.99709 * 18 16 14 22 22 C 1.46497 * 120.00239 * 6.22745 * 12 10 9 23 23 C 1.52994 * 109.47343 * 68.61954 * 22 12 10 24 24 C 1.53009 * 109.47023 * 188.62088 * 22 12 10 25 25 C 1.53005 * 109.47169 * 308.61729 * 22 12 10 26 26 C 1.52997 * 109.46996 * 306.94706 * 25 22 12 27 27 H 1.08994 * 109.46905 * 175.05390 * 1 2 3 28 28 H 1.09005 * 109.46499 * 295.04753 * 1 2 3 29 29 H 1.08991 * 109.46939 * 55.04925 * 1 2 3 30 30 H 1.08997 * 109.46766 * 239.99883 * 2 1 3 31 31 H 1.08999 * 109.47058 * 120.00104 * 2 1 3 32 32 H 1.08008 * 120.00202 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.00094 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.00208 * 180.28022 * 6 5 4 35 35 H 1.07997 * 120.00116 * 179.76584 * 7 6 5 36 36 H 1.09010 * 109.46592 * 200.78028 * 9 8 3 37 37 H 1.08992 * 109.47102 * 320.77406 * 9 8 3 38 38 H 1.09001 * 109.47440 * 214.40988 * 13 12 10 39 39 H 1.08995 * 109.47104 * 334.41535 * 13 12 10 40 40 H 0.97000 * 119.99966 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47077 * 66.14724 * 23 22 12 42 42 H 1.09005 * 109.46944 * 186.13872 * 23 22 12 43 43 H 1.08997 * 109.47243 * 306.13928 * 23 22 12 44 44 H 1.09004 * 109.46927 * 63.91202 * 24 22 12 45 45 H 1.08998 * 109.46769 * 183.90960 * 24 22 12 46 46 H 1.08999 * 109.47102 * 303.90815 * 24 22 12 47 47 H 1.09000 * 109.46825 * 66.94183 * 25 22 12 48 48 H 1.08997 * 109.47199 * 186.94042 * 25 22 12 49 49 H 1.09004 * 109.46993 * 184.98104 * 26 25 22 50 50 H 1.09000 * 109.47314 * 304.97365 * 26 25 22 51 51 H 1.09000 * 109.47613 * 64.97679 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3145 2.0543 -1.1961 5 6 2.7748 3.3575 -1.1961 6 6 2.9481 4.0294 -0.0003 7 6 2.6713 3.3943 1.1957 8 6 2.2108 2.0906 1.1957 9 6 1.9034 1.4001 2.4994 10 6 3.0611 0.5157 2.8847 11 8 4.1267 0.6302 2.3172 12 7 2.9123 -0.4024 3.8600 13 6 4.0705 -1.1673 4.3289 14 6 4.6650 -0.4889 5.5362 15 1 4.1800 0.3767 5.9627 16 6 5.8281 -0.9732 6.0960 17 7 6.4186 -2.0275 5.5768 18 14 6.5655 -0.1320 7.5921 19 1 5.7164 1.0232 7.9790 20 1 6.6333 -1.0965 8.7191 21 1 7.9332 0.3464 7.2670 22 6 1.5923 -0.6358 4.4511 23 6 0.6786 -1.2938 3.4153 24 6 1.7327 -1.5562 5.6653 25 6 0.9870 0.6991 4.8904 26 6 1.9790 1.4367 5.7919 27 1 -0.3633 -1.0238 -0.0886 28 1 -0.3632 0.4351 0.9311 29 1 -0.3633 0.5887 -0.8423 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1744 1.5310 -2.1305 33 1 2.9947 3.8525 -2.1304 34 1 3.3035 5.0493 -0.0005 35 1 2.8103 3.9179 2.1300 36 1 1.7421 2.1470 3.2769 37 1 1.0048 0.7937 2.3863 38 1 3.7555 -2.1758 4.5972 39 1 4.8171 -1.2185 3.5365 40 1 7.2371 -2.3680 5.9705 41 1 1.0516 -2.2914 3.1835 42 1 -0.3319 -1.3681 3.8172 43 1 0.6652 -0.6908 2.5075 44 1 2.3266 -1.0583 6.4319 45 1 0.7444 -1.7858 6.0634 46 1 2.2273 -2.4801 5.3656 47 1 0.7728 1.3075 4.0118 48 1 0.0635 0.5160 5.4396 49 1 1.5147 2.3451 6.1761 50 1 2.2612 0.7929 6.6249 51 1 2.8676 1.6979 5.2172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189919436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:59 Heat of formation + Delta-G solvation = -6.394250 kcal Electronic energy + Delta-G solvation = -29033.553220 eV Core-core repulsion = 25512.189319 eV Total energy + Delta-G solvation = -3521.363901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.43725 -38.92047 -36.62252 -34.27745 -33.36192 -32.27716 -31.53854 -30.15839 -29.38618 -28.84958 -26.46749 -26.16148 -23.78096 -23.16498 -22.69317 -21.83733 -20.76246 -20.01623 -17.89034 -16.59996 -16.46749 -16.00135 -15.60641 -15.37578 -14.82459 -14.48208 -14.22486 -14.12826 -13.89306 -13.68693 -13.34534 -13.16023 -12.84418 -12.72579 -12.55488 -12.28672 -12.09245 -11.96754 -11.79906 -11.72828 -11.67164 -11.39697 -11.09856 -11.06525 -11.01400 -10.89199 -10.74713 -10.59181 -10.51574 -10.35191 -10.33190 -10.02349 -9.72290 -9.41603 -8.94574 -8.56345 -8.38423 -8.30803 -7.53055 -6.00023 -4.03456 1.55356 1.60573 3.29768 3.37968 3.39694 3.49824 3.81910 4.11694 4.46893 4.83208 4.91350 4.99715 5.06437 5.13252 5.18598 5.23015 5.29579 5.34762 5.36471 5.41725 5.47735 5.57268 5.64085 5.66995 5.73598 5.81392 5.87544 5.92109 5.94678 6.01634 6.04479 6.10180 6.19287 6.23085 6.26283 6.31377 6.33499 6.42432 6.49393 6.63014 6.66508 6.68893 6.80102 6.88105 7.05259 7.17824 7.24183 7.56090 7.67058 7.98354 8.30061 8.54029 8.97818 9.19718 9.61236 11.08014 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.004722 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.868138 B = 5928.892592 C = 6636.596714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.054 4.054 9 C -0.125 4.125 10 C 0.515 3.485 11 O -0.536 6.536 12 N -0.586 5.586 13 C 0.241 3.759 14 C -0.523 4.523 15 H 0.068 0.932 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.167 3.833 23 C -0.172 4.172 24 C -0.148 4.148 25 C -0.158 4.158 26 C -0.152 4.152 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.046 0.954 40 H 0.261 0.739 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.041 0.959 50 H 0.067 0.933 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 6.182 -7.978 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.055 4.055 9 C -0.164 4.164 10 C 0.301 3.699 11 O -0.414 6.414 12 N -0.319 5.319 13 C 0.122 3.878 14 C -0.562 4.562 15 H 0.086 0.914 16 C -0.141 4.141 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.081 3.919 23 C -0.230 4.230 24 C -0.205 4.205 25 C -0.196 4.196 26 C -0.209 4.209 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.083 0.917 49 H 0.060 0.940 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.689 6.085 -8.232 17.904 hybrid contribution 0.646 0.423 0.967 1.238 sum -14.043 6.508 -7.265 17.098 Atomic orbital electron populations 1.21778 0.94880 1.01673 1.01966 1.20623 0.95800 0.93124 1.03402 1.19651 0.98865 0.95639 0.92632 1.20918 1.00592 0.95109 0.97160 1.21019 1.00513 0.94983 0.97788 1.21023 1.00969 0.99793 0.92568 1.20988 0.98633 0.94568 0.98062 1.19379 0.98543 0.93914 0.93642 1.21648 0.99442 0.99917 0.95422 1.19942 0.88705 0.81076 0.80128 1.90684 1.28506 1.69044 1.53127 1.48309 1.09190 1.38623 1.35751 1.19324 0.82335 0.90676 0.95426 1.21654 1.08409 1.13970 1.12165 0.91430 1.24931 0.96649 0.95104 0.97401 1.69951 1.19127 1.23467 1.40743 0.86567 0.79341 0.79485 0.82776 1.19801 1.21110 1.21066 1.20302 0.83470 0.94743 0.93365 1.22545 0.99404 1.01597 0.99415 1.22103 1.00824 0.99982 0.97584 1.22582 0.98932 0.96968 1.01086 1.21903 0.99305 0.99189 1.00515 0.92323 0.92562 0.92587 0.91112 0.90577 0.86508 0.86562 0.86459 0.86335 0.87623 0.87748 0.95062 0.93629 0.92956 0.92039 0.91937 0.91970 0.89852 0.93251 0.91547 0.90075 0.91659 0.94028 0.91442 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.09 -1.22 5.30 -27.88 -0.15 -1.37 16 3 C -0.07 -1.00 5.13 -104.63 -0.54 -1.54 16 4 C -0.12 -1.60 9.69 -39.59 -0.38 -1.99 16 5 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 6 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 7 C -0.10 -1.56 9.67 -39.58 -0.38 -1.95 16 8 C -0.05 -0.86 4.42 -104.62 -0.46 -1.32 16 9 C -0.13 -1.95 2.77 -29.04 -0.08 -2.03 16 10 C 0.52 10.58 5.09 -10.99 -0.06 10.52 16 11 O -0.54 -13.65 15.59 5.56 0.09 -13.57 16 12 N -0.59 -11.90 1.69 -160.18 -0.27 -12.17 16 13 C 0.24 6.10 4.66 -5.19 -0.02 6.07 16 14 C -0.52 -13.99 8.03 -34.44 -0.28 -14.27 16 15 H 0.07 1.75 4.89 -52.49 -0.26 1.50 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.17 2.66 0.71 -131.82 -0.09 2.56 16 23 C -0.17 -2.25 8.42 37.15 0.31 -1.94 16 24 C -0.15 -2.43 7.31 37.16 0.27 -2.16 16 25 C -0.16 -2.18 4.29 -26.73 -0.11 -2.29 16 26 C -0.15 -2.42 7.92 37.16 0.29 -2.13 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.56 6.50 -51.93 -0.34 0.22 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.08 1.17 4.99 -51.93 -0.26 0.91 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 36 H 0.11 1.52 5.54 -51.92 -0.29 1.24 16 37 H 0.10 1.40 2.22 -51.93 -0.12 1.28 16 38 H 0.03 0.80 6.02 -51.93 -0.31 0.49 16 39 H 0.05 1.35 7.23 -51.93 -0.38 0.98 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.78 2.73 -51.93 -0.14 0.64 16 44 H 0.08 1.56 5.23 -51.93 -0.27 1.29 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.20 6.36 -51.93 -0.33 0.87 16 47 H 0.08 1.02 3.56 -51.93 -0.19 0.84 16 48 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 1.17 5.72 -51.93 -0.30 0.87 16 51 H 0.06 1.22 5.81 -51.93 -0.30 0.92 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -32.14 371.94 -8.77 -40.91 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.67 Total: 5.72 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -2.23 Total: -17.44 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.47 Total: -37.73 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.14 -8.77 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189919436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.515 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds