Wall clock time and date at job start Tue Mar 31 2020 11:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47447 * 2 1 4 4 C 1.38253 * 120.00006 * 267.38124 * 3 2 1 5 5 C 1.38213 * 119.99964 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.99981 * 359.74449 * 5 4 3 7 7 C 1.38214 * 119.99988 * 0.51345 * 6 5 4 8 8 C 1.38210 * 119.99647 * 87.35617 * 3 2 1 9 9 C 1.50700 * 120.00247 * 0.02562 * 8 3 2 10 10 C 1.50698 * 109.47314 * 80.78123 * 9 8 3 11 11 O 1.21275 * 120.00027 * 13.45898 * 10 9 8 12 12 N 1.34774 * 119.99648 * 193.46308 * 10 9 8 13 13 C 1.46506 * 119.99820 * 186.22238 * 12 10 9 14 14 C 1.50703 * 109.46707 * 94.41267 * 13 12 10 15 15 H 1.08002 * 119.99973 * 4.77843 * 14 13 12 16 16 C 1.37871 * 119.99760 * 184.78793 * 14 13 12 17 17 N 1.31519 * 120.00245 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47213 * 119.99595 * 18 16 14 21 21 H 1.48497 * 109.47287 * 239.99709 * 18 16 14 22 22 C 1.46497 * 120.00239 * 6.22745 * 12 10 9 23 23 C 1.52994 * 109.47343 * 68.61954 * 22 12 10 24 24 C 1.53009 * 109.47023 * 188.62088 * 22 12 10 25 25 C 1.53005 * 109.47169 * 308.61729 * 22 12 10 26 26 C 1.52997 * 109.46996 * 306.94706 * 25 22 12 27 27 H 1.08994 * 109.46905 * 175.05390 * 1 2 3 28 28 H 1.09005 * 109.46499 * 295.04753 * 1 2 3 29 29 H 1.08991 * 109.46939 * 55.04925 * 1 2 3 30 30 H 1.08997 * 109.46766 * 239.99883 * 2 1 3 31 31 H 1.08999 * 109.47058 * 120.00104 * 2 1 3 32 32 H 1.08008 * 120.00202 * 0.02562 * 4 3 2 33 33 H 1.08005 * 120.00094 * 180.02562 * 5 4 3 34 34 H 1.08001 * 120.00208 * 180.28022 * 6 5 4 35 35 H 1.07997 * 120.00116 * 179.76584 * 7 6 5 36 36 H 1.09010 * 109.46592 * 200.78028 * 9 8 3 37 37 H 1.08992 * 109.47102 * 320.77406 * 9 8 3 38 38 H 1.09001 * 109.47440 * 214.40988 * 13 12 10 39 39 H 1.08995 * 109.47104 * 334.41535 * 13 12 10 40 40 H 0.97000 * 119.99966 * 179.97438 * 17 16 14 41 41 H 1.08998 * 109.47077 * 66.14724 * 23 22 12 42 42 H 1.09005 * 109.46944 * 186.13872 * 23 22 12 43 43 H 1.08997 * 109.47243 * 306.13928 * 23 22 12 44 44 H 1.09004 * 109.46927 * 63.91202 * 24 22 12 45 45 H 1.08998 * 109.46769 * 183.90960 * 24 22 12 46 46 H 1.08999 * 109.47102 * 303.90815 * 24 22 12 47 47 H 1.09000 * 109.46825 * 66.94183 * 25 22 12 48 48 H 1.08997 * 109.47199 * 186.94042 * 25 22 12 49 49 H 1.09004 * 109.46993 * 184.98104 * 26 25 22 50 50 H 1.09000 * 109.47314 * 304.97365 * 26 25 22 51 51 H 1.09000 * 109.47613 * 64.97679 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.3145 2.0543 -1.1961 5 6 2.7748 3.3575 -1.1961 6 6 2.9481 4.0294 -0.0003 7 6 2.6713 3.3943 1.1957 8 6 2.2108 2.0906 1.1957 9 6 1.9034 1.4001 2.4994 10 6 3.0611 0.5157 2.8847 11 8 4.1267 0.6302 2.3172 12 7 2.9123 -0.4024 3.8600 13 6 4.0705 -1.1673 4.3289 14 6 4.6650 -0.4889 5.5362 15 1 4.1800 0.3767 5.9627 16 6 5.8281 -0.9732 6.0960 17 7 6.4186 -2.0275 5.5768 18 14 6.5655 -0.1320 7.5921 19 1 5.7164 1.0232 7.9790 20 1 6.6333 -1.0965 8.7191 21 1 7.9332 0.3464 7.2670 22 6 1.5923 -0.6358 4.4511 23 6 0.6786 -1.2938 3.4153 24 6 1.7327 -1.5562 5.6653 25 6 0.9870 0.6991 4.8904 26 6 1.9790 1.4367 5.7919 27 1 -0.3633 -1.0238 -0.0886 28 1 -0.3632 0.4351 0.9311 29 1 -0.3633 0.5887 -0.8423 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.1744 1.5310 -2.1305 33 1 2.9947 3.8525 -2.1304 34 1 3.3035 5.0493 -0.0005 35 1 2.8103 3.9179 2.1300 36 1 1.7421 2.1470 3.2769 37 1 1.0048 0.7937 2.3863 38 1 3.7555 -2.1758 4.5972 39 1 4.8171 -1.2185 3.5365 40 1 7.2371 -2.3680 5.9705 41 1 1.0516 -2.2914 3.1835 42 1 -0.3319 -1.3681 3.8172 43 1 0.6652 -0.6908 2.5075 44 1 2.3266 -1.0583 6.4319 45 1 0.7444 -1.7858 6.0634 46 1 2.2273 -2.4801 5.3656 47 1 0.7728 1.3075 4.0118 48 1 0.0635 0.5160 5.4396 49 1 1.5147 2.3451 6.1761 50 1 2.2612 0.7929 6.6249 51 1 2.8676 1.6979 5.2172 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189919436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:58 Heat of formation + Delta-G solvation = -23.353171 kcal Electronic energy + Delta-G solvation = -29034.288614 eV Core-core repulsion = 25512.189319 eV Total energy + Delta-G solvation = -3522.099295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82432 -40.09661 -38.19424 -35.51220 -35.02066 -33.73816 -33.09529 -31.41201 -30.54660 -30.18104 -28.11365 -27.45566 -24.92693 -24.58976 -24.24703 -23.03753 -22.02032 -21.20319 -19.44174 -18.58372 -17.68329 -17.21715 -17.14199 -16.70711 -16.27626 -16.02582 -15.80609 -15.35829 -15.21850 -14.73174 -14.45472 -14.33825 -14.29790 -14.02491 -13.84504 -13.77120 -13.54285 -13.20284 -13.19977 -12.92479 -12.90144 -12.81200 -12.62962 -12.55978 -12.30171 -12.19208 -12.14464 -12.01616 -11.87438 -11.74141 -11.65698 -11.52985 -11.29901 -10.94714 -10.61433 -10.57174 -9.64458 -9.42121 -9.27409 -8.15060 -6.26334 0.47835 0.54703 1.34854 1.37553 1.48032 1.89623 2.33200 2.47816 2.93052 3.14938 3.70624 3.78444 3.88166 3.91660 4.04112 4.05738 4.12268 4.21639 4.29353 4.32733 4.47612 4.49989 4.53213 4.64513 4.70083 4.74300 4.77556 4.83301 4.83735 4.91833 4.97258 5.04795 5.09826 5.11144 5.17579 5.18702 5.20498 5.24592 5.25389 5.34342 5.42609 5.47894 5.51476 5.62986 5.64917 5.71031 5.74523 5.79672 5.98736 6.17578 6.18959 6.82708 6.93735 7.37746 7.59625 8.92405 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014312 B = 0.004722 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.868138 B = 5928.892592 C = 6636.596714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C -0.082 4.082 4 C -0.130 4.130 5 C -0.125 4.125 6 C -0.133 4.133 7 C -0.124 4.124 8 C -0.081 4.081 9 C -0.107 4.107 10 C 0.511 3.489 11 O -0.598 6.598 12 N -0.587 5.587 13 C 0.260 3.740 14 C -0.522 4.522 15 H 0.074 0.926 16 C 0.004 3.996 17 N -0.934 5.934 18 Si 0.956 3.044 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.289 1.289 22 C 0.156 3.844 23 C -0.167 4.167 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.138 0.862 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.022 0.978 39 H -0.011 1.011 40 H 0.261 0.739 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.039 0.961 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.049 0.951 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 7.815 -7.963 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 C -0.083 4.083 4 C -0.148 4.148 5 C -0.143 4.143 6 C -0.151 4.151 7 C -0.142 4.142 8 C -0.082 4.082 9 C -0.145 4.145 10 C 0.300 3.700 11 O -0.480 6.480 12 N -0.318 5.318 13 C 0.139 3.861 14 C -0.561 4.561 15 H 0.092 0.908 16 C -0.194 4.194 17 N -0.575 5.575 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.216 1.216 22 C 0.072 3.928 23 C -0.224 4.224 24 C -0.201 4.201 25 C -0.189 4.189 26 C -0.207 4.207 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.040 0.960 39 H 0.007 0.993 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.088 0.912 50 H 0.068 0.932 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.975 7.722 -8.197 21.212 hybrid contribution 1.661 -0.100 0.900 1.891 sum -16.315 7.622 -7.297 19.430 Atomic orbital electron populations 1.21749 0.92253 1.02866 1.02748 1.20638 0.98071 0.92117 1.02167 1.19932 0.99056 0.96292 0.92971 1.21259 1.00241 0.95674 0.97587 1.21424 0.99168 0.94815 0.98844 1.21357 1.00518 1.00960 0.92255 1.21229 0.99113 0.94781 0.99097 1.19513 1.00233 0.94566 0.93881 1.21554 0.97660 0.99257 0.96047 1.20811 0.89354 0.80831 0.78994 1.90642 1.31350 1.70755 1.55220 1.48309 1.09723 1.37927 1.35855 1.18732 0.83160 0.91075 0.93182 1.21951 1.08336 1.13711 1.12084 0.90776 1.25810 0.97340 0.95790 1.00475 1.70093 1.19700 1.25171 1.42494 0.85535 0.78060 0.78868 0.79412 1.18560 1.19948 1.21565 1.20747 0.81678 0.96539 0.93874 1.22507 1.00534 1.00531 0.98846 1.22055 1.02377 0.98488 0.97210 1.22590 0.99404 0.95207 1.01707 1.21843 0.98662 1.00419 0.99821 0.90953 0.91986 0.91517 0.90872 0.93314 0.84405 0.83647 0.84161 0.86028 0.86240 0.85309 0.96028 0.99256 0.92976 0.93354 0.87921 0.91434 0.92447 0.89149 0.94214 0.88491 0.87813 0.91191 0.93243 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.18 71.98 0.66 -1.84 16 2 C -0.09 -2.38 5.30 29.85 0.16 -2.23 16 3 C -0.08 -2.38 5.13 -19.87 -0.10 -2.48 16 4 C -0.13 -3.28 9.69 22.27 0.22 -3.06 16 5 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 6 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 7 C -0.12 -3.66 9.67 22.27 0.22 -3.44 16 8 C -0.08 -2.53 4.42 -19.87 -0.09 -2.62 16 9 C -0.11 -3.25 2.77 29.10 0.08 -3.17 16 10 C 0.51 21.75 5.09 87.66 0.45 22.19 16 11 O -0.60 -32.42 15.59 -3.01 -0.05 -32.47 16 12 N -0.59 -24.68 1.69 -779.07 -1.32 -26.00 16 13 C 0.26 14.02 4.66 85.63 0.40 14.42 16 14 C -0.52 -29.18 8.03 25.60 0.21 -28.98 16 15 H 0.07 3.97 4.89 -2.91 -0.01 3.96 16 16 C 0.00 0.21 5.46 84.65 0.46 0.67 16 17 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 18 Si 0.96 45.27 29.54 68.60 2.03 47.30 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 22 C 0.16 4.76 0.71 3.61 0.00 4.77 16 23 C -0.17 -3.97 8.42 71.98 0.61 -3.36 16 24 C -0.14 -4.65 7.31 71.99 0.53 -4.13 16 25 C -0.15 -3.72 4.29 30.60 0.13 -3.58 16 26 C -0.15 -4.57 7.92 71.98 0.57 -4.00 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.03 6.50 -2.38 -0.02 1.02 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.78 8.07 -2.39 -0.02 1.77 16 31 H 0.05 1.51 4.99 -2.39 -0.01 1.50 16 32 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.12 3.33 8.04 -2.91 -0.02 3.31 16 36 H 0.12 3.27 5.54 -2.38 -0.01 3.26 16 37 H 0.13 3.18 2.22 -2.39 -0.01 3.18 16 38 H 0.02 1.20 6.02 -2.39 -0.01 1.19 16 39 H -0.01 -0.69 7.23 -2.39 -0.02 -0.71 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.07 1.54 2.73 -2.39 -0.01 1.53 16 44 H 0.06 2.15 5.23 -2.39 -0.01 2.14 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.47 6.36 -2.39 -0.02 1.45 16 47 H 0.10 2.09 3.56 -2.39 -0.01 2.09 16 48 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 50 H 0.05 1.67 5.72 -2.39 -0.01 1.65 16 51 H 0.03 0.99 5.81 -2.39 -0.01 0.98 16 Total: -1.00 -76.50 371.94 6.82 -69.68 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.94 Total: 25.44 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.94 Total: -26.66 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -1.03 Total: -83.29 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.05 Total: -32.47 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -76.50 6.82 -69.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189919436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.329 kcal (2) G-P(sol) polarization free energy of solvation -76.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds