Wall clock time and date at job start Tue Mar 31 2020 11:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47197 * 2 1 4 4 C 1.38236 * 120.00382 * 269.73202 * 3 2 1 5 5 C 1.38233 * 119.99822 * 179.76663 * 4 3 2 6 6 C 1.38233 * 120.00418 * 0.48215 * 5 4 3 7 7 C 1.50693 * 120.00420 * 179.76870 * 6 5 4 8 8 C 1.50705 * 109.47360 * 270.02702 * 7 6 5 9 9 O 1.21276 * 119.99530 * 13.23097 * 8 7 6 10 10 N 1.34776 * 119.99674 * 193.23754 * 8 7 6 11 11 C 1.46500 * 119.99478 * 188.16972 * 10 8 7 12 12 C 1.50701 * 109.47004 * 89.54623 * 11 10 8 13 13 H 1.07998 * 120.00287 * 3.78441 * 12 11 10 14 14 C 1.37884 * 120.00118 * 183.77938 * 12 11 10 15 15 N 1.31510 * 119.99833 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47453 * 89.99817 * 16 14 12 18 18 H 1.48500 * 109.47173 * 209.99733 * 16 14 12 19 19 H 1.48507 * 109.47350 * 329.99505 * 16 14 12 20 20 C 1.46494 * 120.00711 * 8.16995 * 10 8 7 21 21 C 1.53003 * 109.47007 * 67.50834 * 20 10 8 22 22 C 1.52995 * 109.47441 * 187.50676 * 20 10 8 23 23 C 1.53004 * 109.47055 * 307.51169 * 20 10 8 24 24 C 1.53003 * 109.46913 * 308.90998 * 23 20 10 25 25 C 1.38241 * 119.99696 * 359.79414 * 6 5 4 26 26 C 1.38230 * 119.99700 * 359.95094 * 25 6 5 27 27 H 1.09004 * 109.47032 * 299.99587 * 1 2 3 28 28 H 1.09001 * 109.47475 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47626 * 59.99493 * 1 2 3 30 30 H 1.08996 * 109.47355 * 120.00206 * 2 1 3 31 31 H 1.09000 * 109.46723 * 240.00784 * 2 1 3 32 32 H 1.08001 * 119.99726 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99617 * 180.25218 * 5 4 3 34 34 H 1.09003 * 109.46964 * 30.02425 * 7 6 5 35 35 H 1.09004 * 109.47760 * 150.02231 * 7 6 5 36 36 H 1.08998 * 109.47194 * 209.54394 * 11 10 8 37 37 H 1.09001 * 109.47528 * 329.55043 * 11 10 8 38 38 H 0.97002 * 119.99899 * 180.02562 * 15 14 12 39 39 H 1.09001 * 109.47093 * 39.29907 * 21 20 10 40 40 H 1.09000 * 109.47350 * 159.30312 * 21 20 10 41 41 H 1.09005 * 109.47149 * 279.30621 * 21 20 10 42 42 H 1.09000 * 109.46986 * 59.05624 * 22 20 10 43 43 H 1.09000 * 109.47153 * 179.05429 * 22 20 10 44 44 H 1.08997 * 109.47407 * 299.05792 * 22 20 10 45 45 H 1.08995 * 109.47147 * 68.91130 * 23 20 10 46 46 H 1.09000 * 109.46811 * 188.91053 * 23 20 10 47 47 H 1.09004 * 109.46692 * 309.55893 * 24 23 20 48 48 H 1.08993 * 109.46961 * 69.55766 * 24 23 20 49 49 H 1.09001 * 109.46877 * 189.55981 * 24 23 20 50 50 H 1.07998 * 119.99942 * 179.97438 * 25 6 5 51 51 H 1.08009 * 119.99745 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2680 2.0707 -1.1971 5 6 2.7242 3.3755 -1.1970 6 6 2.9542 4.0273 0.0001 7 6 3.4565 5.4481 0.0003 8 6 4.9636 5.4482 0.0001 9 8 5.5699 4.4258 -0.2405 10 7 5.6373 6.5844 0.2674 11 6 7.0912 6.6320 0.0932 12 6 7.4145 7.0580 -1.3157 13 1 6.6192 7.3309 -1.9934 14 6 8.7260 7.0996 -1.7396 15 7 9.0081 7.4719 -2.9689 16 14 10.1017 6.6271 -0.5676 17 1 10.3711 5.1713 -0.6818 18 1 11.3299 7.3865 -0.9143 19 1 9.6978 6.9481 0.8249 20 6 4.9161 7.7717 0.7322 21 6 4.3537 7.5117 2.1312 22 6 5.8739 8.9637 0.7811 23 6 3.7672 8.0797 -0.2302 24 6 4.2998 8.1203 -1.6639 25 6 2.7240 3.3755 1.1973 26 6 2.2628 2.0724 1.1972 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 0.8899 31 1 1.8932 -0.5137 -0.8901 32 1 2.0925 1.5600 -2.1324 33 1 2.9045 3.8846 -2.1323 34 1 3.0931 5.9620 -0.8897 35 1 3.0933 5.9619 0.8903 36 1 7.5181 7.3473 0.7961 37 1 7.5121 5.6439 0.2796 38 1 9.9307 7.5008 -3.2672 39 1 5.0810 6.9488 2.7163 40 1 4.1493 8.4627 2.6231 41 1 3.4302 6.9383 2.0507 42 1 6.2875 9.1385 -0.2122 43 1 5.3334 9.8510 1.1108 44 1 6.6834 8.7510 1.4793 45 1 3.0059 7.3041 -0.1472 46 1 3.3306 9.0459 0.0227 47 1 5.1727 8.7717 -1.7089 48 1 4.5807 7.1144 -1.9757 49 1 3.5256 8.5038 -2.3284 50 1 2.9041 3.8845 2.1326 51 1 2.0832 1.5630 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189931242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:01 Heat of formation + Delta-G solvation = -24.559147 kcal Electronic energy + Delta-G solvation = -28049.458951 eV Core-core repulsion = 24527.307361 eV Total energy + Delta-G solvation = -3522.151590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68866 -40.14347 -38.26218 -35.76872 -35.00290 -33.55605 -32.41456 -31.79641 -31.38637 -30.27002 -28.19144 -27.48259 -24.67961 -24.24947 -23.75777 -23.61366 -22.10837 -21.29044 -19.42091 -19.04734 -17.64805 -17.22785 -16.88075 -16.60467 -16.28788 -16.05847 -15.69280 -15.45518 -15.28824 -14.76354 -14.53904 -14.52227 -14.37027 -14.13938 -14.05841 -13.70086 -13.68997 -13.28606 -13.16817 -12.95655 -12.90654 -12.80067 -12.70126 -12.42975 -12.36022 -12.26412 -12.06965 -11.98135 -11.86012 -11.72471 -11.67379 -11.61255 -11.35468 -10.98927 -10.76210 -10.67392 -9.77032 -9.37108 -9.25771 -8.27688 -6.28151 0.43259 0.55323 1.28850 1.33512 1.40133 1.84902 2.31894 2.34454 2.89540 3.06674 3.72084 3.76024 3.88379 3.90347 3.99561 4.06978 4.14688 4.18230 4.21202 4.41014 4.49445 4.51359 4.56207 4.61309 4.67269 4.72851 4.75278 4.77903 4.83547 4.87701 4.95516 4.98592 5.07404 5.09101 5.09570 5.11078 5.18001 5.22853 5.24339 5.26033 5.40996 5.43876 5.46472 5.54174 5.54587 5.70661 5.73540 5.75177 5.81691 6.16759 6.35306 6.76644 6.83678 7.30937 7.51887 8.87831 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.003848 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.553265 B = 7274.156514 C = 8088.417894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.092 4.092 4 C -0.128 4.128 5 C -0.120 4.120 6 C -0.085 4.085 7 C -0.104 4.104 8 C 0.511 3.489 9 O -0.594 6.594 10 N -0.587 5.587 11 C 0.222 3.778 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.015 3.985 15 N -0.944 5.944 16 Si 0.929 3.071 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.244 1.244 20 C 0.155 3.845 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.144 4.144 25 C -0.117 4.117 26 C -0.124 4.124 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.047 0.953 37 H 0.005 0.995 38 H 0.264 0.736 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.022 0.978 49 H 0.063 0.937 50 H 0.134 0.866 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.661 -4.469 11.946 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.146 4.146 5 C -0.138 4.138 6 C -0.085 4.085 7 C -0.143 4.143 8 C 0.300 3.700 9 O -0.475 6.475 10 N -0.318 5.318 11 C 0.100 3.900 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.183 4.183 15 N -0.586 5.586 16 Si 0.754 3.246 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.168 1.168 20 C 0.072 3.928 21 C -0.218 4.218 22 C -0.207 4.207 23 C -0.185 4.185 24 C -0.202 4.202 25 C -0.135 4.135 26 C -0.142 4.142 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.128 0.872 34 H 0.134 0.866 35 H 0.152 0.848 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.115 0.885 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.061 0.939 48 H 0.041 0.959 49 H 0.082 0.918 50 H 0.152 0.848 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.187 -4.927 11.728 23.020 hybrid contribution 1.690 -0.114 -0.560 1.784 sum -17.497 -5.041 11.168 21.360 Atomic orbital electron populations 1.21712 0.93663 1.02440 1.02024 1.20576 0.96973 0.91129 1.03356 1.20190 0.98874 0.97295 0.92863 1.21176 1.00402 0.94397 0.98640 1.21129 0.99281 0.95830 0.97599 1.19606 0.99195 0.95636 0.94057 1.21476 0.90611 0.95358 1.06831 1.20906 0.90728 0.82579 0.75776 1.90633 1.71683 1.34055 1.51154 1.48111 1.07610 1.11397 1.64642 1.19312 0.79006 0.95859 0.95869 1.21792 0.93308 1.43275 0.97503 0.92131 1.25644 1.01172 0.95093 0.96371 1.70022 1.19789 1.50323 1.18427 0.85987 0.79427 0.78126 0.81058 1.21111 1.20327 1.16753 1.20790 0.92643 0.84768 0.94647 1.22427 1.01180 1.03919 0.94265 1.22124 0.99040 0.97063 1.02515 1.22565 0.97423 1.04925 0.93556 1.21777 1.00531 1.00397 0.97470 1.21205 0.99257 0.95620 0.97427 1.21241 0.99972 0.94533 0.98425 0.92482 0.91022 0.93033 0.90214 0.90900 0.85113 0.87150 0.86574 0.84810 0.93497 0.97653 0.92704 0.93282 0.88521 0.90399 0.93048 0.88859 0.93025 0.88281 0.87971 0.93905 0.95929 0.91803 0.84831 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.89 71.98 0.71 -1.26 16 2 C -0.08 -1.43 6.07 29.85 0.18 -1.25 16 3 C -0.09 -2.19 5.13 -19.87 -0.10 -2.29 16 4 C -0.13 -3.44 9.70 22.27 0.22 -3.23 16 5 C -0.12 -3.72 9.70 22.27 0.22 -3.51 16 6 C -0.08 -2.55 4.41 -19.87 -0.09 -2.64 16 7 C -0.10 -3.06 3.44 29.10 0.10 -2.96 16 8 C 0.51 20.99 6.25 87.66 0.55 21.53 16 9 O -0.59 -30.85 15.66 -3.02 -0.05 -30.89 16 10 N -0.59 -23.45 1.70 -779.09 -1.32 -24.77 16 11 C 0.22 10.86 3.66 85.63 0.31 11.17 16 12 C -0.52 -29.71 8.89 25.60 0.23 -29.48 16 13 H 0.06 3.72 5.26 -2.91 -0.02 3.70 16 14 C 0.01 0.87 5.47 84.66 0.46 1.33 16 15 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 16 Si 0.93 45.78 27.39 68.60 1.88 47.66 16 17 H -0.28 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.24 -10.97 6.65 99.48 0.66 -10.31 16 20 C 0.16 4.50 0.72 3.61 0.00 4.50 16 21 C -0.16 -3.36 8.45 71.98 0.61 -2.75 16 22 C -0.15 -4.54 7.07 71.98 0.51 -4.03 16 23 C -0.15 -3.65 4.27 30.60 0.13 -3.52 16 24 C -0.14 -4.84 7.93 71.98 0.57 -4.27 16 25 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 26 C -0.12 -2.92 9.70 22.27 0.22 -2.71 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 32 H 0.13 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.11 3.46 8.06 -2.91 -0.02 3.43 16 34 H 0.12 3.22 5.49 -2.39 -0.01 3.21 16 35 H 0.13 2.94 3.97 -2.38 -0.01 2.94 16 36 H 0.05 2.16 5.19 -2.39 -0.01 2.15 16 37 H 0.01 0.29 6.56 -2.39 -0.02 0.28 16 38 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.05 1.18 8.12 -2.39 -0.02 1.16 16 40 H 0.10 1.47 7.97 -2.39 -0.02 1.45 16 41 H 0.08 1.32 5.39 -2.38 -0.01 1.31 16 42 H 0.05 1.96 5.45 -2.39 -0.01 1.94 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 44 H 0.05 1.61 6.66 -2.39 -0.02 1.60 16 45 H 0.10 2.09 3.70 -2.39 -0.01 2.08 16 46 H 0.10 1.89 8.12 -2.39 -0.02 1.87 16 47 H 0.04 1.68 5.68 -2.39 -0.01 1.67 16 48 H 0.02 0.90 5.71 -2.39 -0.01 0.89 16 49 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 51 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -77.30 380.74 6.72 -70.58 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.87 Total: 24.99 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: 5.04 Total: -28.22 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -1.02 Total: -84.10 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.05 Total: -30.89 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.88 Total: 47.66 kcal Total: -77.30 6.72 -70.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189931242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.017 kcal (2) G-P(sol) polarization free energy of solvation -77.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds