Wall clock time and date at job start Tue Mar 31 2020 11:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46900 * 109.46805 * 2 1 4 4 C 1.46894 * 111.00224 * 60.00187 * 3 2 1 5 5 C 1.50696 * 109.47208 * 179.97438 * 4 3 2 6 6 C 1.38290 * 119.97271 * 89.99433 * 5 4 3 7 7 C 1.38251 * 120.11123 * 180.02562 * 6 5 4 8 8 C 1.38163 * 120.05527 * 0.24024 * 7 6 5 9 9 C 1.38717 * 119.94349 * 359.50941 * 8 7 6 10 10 O 1.35896 * 120.05449 * 180.21612 * 9 8 7 11 11 C 1.42901 * 117.00083 * 0.29520 * 10 9 8 12 12 C 1.52999 * 109.47050 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47295 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99701 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00043 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00505 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99783 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46990 * 60.00328 * 17 15 13 19 19 H 1.48499 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47200 * 300.00005 * 17 15 13 21 21 C 1.38121 * 119.97404 * 270.02071 * 5 4 3 22 22 C 1.53000 * 109.47086 * 119.99784 * 2 1 3 23 23 C 1.53000 * 109.47054 * 59.99976 * 22 2 1 24 24 C 1.52997 * 109.47358 * 60.00078 * 23 22 2 25 25 C 1.53000 * 109.46974 * 299.99971 * 24 23 22 26 26 C 1.52997 * 109.47066 * 239.99547 * 2 1 3 27 27 H 1.08992 * 109.46607 * 60.00324 * 1 2 3 28 28 H 1.08995 * 109.46940 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.46889 * 300.00006 * 1 2 3 30 30 H 1.00903 * 110.99384 * 183.95747 * 3 2 1 31 31 H 1.08995 * 109.47288 * 59.99456 * 4 3 2 32 32 H 1.09009 * 109.46961 * 299.99616 * 4 3 2 33 33 H 1.07998 * 119.94582 * 0.02562 * 6 5 4 34 34 H 1.08002 * 119.96904 * 179.97438 * 7 6 5 35 35 H 1.07998 * 120.03052 * 179.74049 * 8 7 6 36 36 H 1.09002 * 109.46832 * 299.99699 * 11 10 9 37 37 H 1.08998 * 109.47360 * 59.99984 * 11 10 9 38 38 H 1.09000 * 109.47142 * 300.00051 * 12 11 10 39 39 H 1.08998 * 109.47342 * 59.99618 * 12 11 10 40 40 H 0.97002 * 120.00714 * 179.97438 * 16 15 13 41 41 H 1.07997 * 120.02529 * 359.97438 * 21 5 4 42 42 H 1.08999 * 109.47238 * 179.97438 * 22 2 1 43 43 H 1.09002 * 109.46993 * 300.00031 * 22 2 1 44 44 H 1.09006 * 109.47388 * 300.00177 * 23 22 2 45 45 H 1.09001 * 109.47326 * 180.02562 * 23 22 2 46 46 H 1.08995 * 109.47331 * 179.97438 * 24 23 22 47 47 H 1.09006 * 109.46790 * 59.99733 * 24 23 22 48 48 H 1.08999 * 109.47238 * 299.99912 * 25 24 23 49 49 H 1.09002 * 109.46993 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.47170 * 60.00009 * 26 2 1 51 51 H 1.08993 * 109.47075 * 179.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5487 2.1099 1.1876 5 6 2.0703 3.5233 1.1531 6 6 1.3315 4.5175 0.5381 7 6 1.8075 5.8150 0.5043 8 6 3.0253 6.1206 1.0808 9 6 3.7658 5.1262 1.7030 10 8 4.9619 5.4251 2.2747 11 6 5.3930 6.7856 2.2035 12 6 6.7504 6.9274 2.8952 13 6 7.2054 8.3620 2.8196 14 1 6.5883 9.0990 2.3270 15 6 8.4093 8.7338 3.3793 16 7 9.1605 7.8366 3.9795 17 14 8.9736 10.5121 3.2849 18 1 7.9794 11.3835 3.9612 19 1 10.2910 10.6497 3.9564 20 1 9.0994 10.9167 1.8617 21 6 3.2860 3.8247 1.7353 22 6 2.0401 -0.7212 1.2493 23 6 1.5301 -2.1637 1.2493 24 6 2.0401 -2.8850 0.0001 25 6 1.5301 -2.1638 -1.2491 26 6 2.0401 -0.7213 -1.2492 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.0263 1.4126 -0.0650 31 1 1.9121 1.6107 2.0858 32 1 0.4588 2.1245 1.1959 33 1 0.3812 4.2799 0.0834 34 1 1.2289 6.5896 0.0229 35 1 3.3987 7.1335 1.0505 36 1 5.4851 7.0834 1.1590 37 1 4.6631 7.4246 2.7004 38 1 6.6587 6.6294 3.9397 39 1 7.4801 6.2885 2.3979 40 1 10.0077 8.0981 4.3729 41 1 3.8625 3.0479 2.2155 42 1 3.1301 -0.7216 1.2491 43 1 1.6767 -0.2073 2.1392 44 1 0.4400 -2.1637 1.2493 45 1 1.8930 -2.6774 2.1395 46 1 1.6771 -3.9128 0.0004 47 1 3.1301 -2.8850 0.0002 48 1 0.4401 -2.1638 -1.2491 49 1 1.8938 -2.6775 -2.1391 50 1 1.6767 -0.2076 -2.1392 51 1 3.1300 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236653994.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:03 Heat of formation + Delta-G solvation = -59.926979 kcal Electronic energy + Delta-G solvation = -25987.959844 eV Core-core repulsion = 22464.274590 eV Total energy + Delta-G solvation = -3523.685254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18383 -40.57672 -38.67683 -36.02051 -35.45179 -32.77996 -32.57632 -31.70244 -30.70056 -29.98757 -27.96413 -27.07271 -25.95515 -23.79790 -23.33171 -23.24572 -22.09609 -21.42062 -19.37914 -19.16445 -18.20174 -17.28997 -17.00464 -16.94711 -16.80563 -16.46472 -15.98382 -15.74514 -15.39286 -15.15250 -14.68078 -14.37364 -14.33627 -14.32051 -14.09976 -13.98025 -13.56551 -13.34574 -13.09438 -13.03980 -12.92425 -12.80043 -12.58997 -12.57338 -12.39953 -12.26515 -11.98141 -11.83816 -11.81072 -11.60187 -11.58658 -11.40317 -11.30161 -11.10463 -10.96458 -10.62933 -9.84401 -9.25722 -9.09098 -8.27816 -6.41865 0.34316 0.54419 1.39948 1.44126 1.52096 2.26053 2.50166 2.75577 3.06321 3.32400 3.76376 3.77441 3.86775 3.91142 4.07543 4.13101 4.21660 4.24888 4.25391 4.28959 4.39049 4.42861 4.46376 4.50136 4.57409 4.62133 4.66687 4.70288 4.71940 4.81132 4.84628 4.98374 5.01994 5.09742 5.14002 5.17796 5.24729 5.25697 5.29857 5.31117 5.39332 5.43109 5.44588 5.48876 5.52845 5.62241 5.65071 5.67761 5.90475 6.06139 6.15952 6.41227 6.56494 6.72568 7.28240 8.85093 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022388 B = 0.002046 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.387913 B =13680.982390 C =14480.162966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.115 3.885 3 N -0.678 5.678 4 C 0.103 3.897 5 C -0.044 4.044 6 C -0.140 4.140 7 C -0.078 4.078 8 C -0.223 4.223 9 C 0.107 3.893 10 O -0.343 6.343 11 C 0.085 3.915 12 C 0.029 3.971 13 C -0.547 4.547 14 H 0.071 0.929 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.977 3.023 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.263 1.263 21 C -0.165 4.165 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.104 4.104 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.338 0.662 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.059 0.941 38 H -0.002 1.002 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.120 0.880 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.833 -19.113 -10.160 30.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.025 3.975 3 N -0.308 5.308 4 C -0.025 4.025 5 C -0.044 4.044 6 C -0.159 4.159 7 C -0.096 4.096 8 C -0.242 4.242 9 C 0.061 3.939 10 O -0.257 6.257 11 C 0.011 3.989 12 C -0.009 4.009 13 C -0.585 4.585 14 H 0.089 0.911 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.800 3.200 18 H -0.188 1.188 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.184 4.184 22 C -0.187 4.187 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.142 4.142 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.076 0.924 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.092 0.908 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.044 -19.026 -10.375 30.913 hybrid contribution 1.665 0.705 1.023 2.077 sum -20.380 -18.321 -9.352 28.956 Atomic orbital electron populations 1.21968 0.93124 1.02507 1.02123 1.20966 0.96075 0.86163 0.94306 1.60750 1.16353 1.13844 1.39817 1.20906 1.01040 0.88405 0.92128 1.19714 0.92540 0.96485 0.95679 1.21160 1.01470 0.92029 1.01231 1.21246 0.94000 0.97674 0.96712 1.21494 0.98386 0.99314 1.05018 1.19482 0.85523 0.95082 0.93787 1.86075 1.34325 1.31452 1.73894 1.22846 0.96880 0.78877 1.00293 1.18958 0.90419 0.96739 0.94734 1.21365 1.05362 0.94133 1.37640 0.91105 1.26062 0.96462 1.03018 0.94242 1.70110 1.13078 1.36304 1.37505 0.85325 0.77519 0.78177 0.78973 1.18795 1.20734 1.18814 1.20415 0.98147 0.93694 1.06184 1.22282 1.00237 0.97320 0.98899 1.21518 1.01338 0.94383 0.98042 1.21550 1.00410 0.99287 0.94521 1.21557 1.01419 0.94403 0.97960 1.21502 1.00024 0.95694 0.96963 0.92209 0.90680 0.92613 0.84409 0.93978 0.88395 0.83499 0.83216 0.85615 0.92300 0.92254 0.98384 0.98409 0.92411 0.86151 0.93146 0.92081 0.90849 0.92214 0.91112 0.92842 0.90841 0.91430 0.91555 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.54 71.99 0.54 -1.18 16 2 C 0.12 1.66 0.71 3.53 0.00 1.66 16 3 N -0.68 -12.16 6.08 -474.15 -2.88 -15.05 16 4 C 0.10 1.92 5.02 85.56 0.43 2.35 16 5 C -0.04 -1.05 5.39 -19.88 -0.11 -1.16 16 6 C -0.14 -3.14 9.70 22.29 0.22 -2.92 16 7 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 8 C -0.22 -7.01 9.04 22.37 0.20 -6.81 16 9 C 0.11 3.85 6.69 22.51 0.15 4.00 16 10 O -0.34 -15.05 10.14 -92.38 -0.94 -15.99 16 11 C 0.09 3.85 4.68 71.98 0.34 4.18 16 12 C 0.03 1.60 5.34 29.85 0.16 1.76 16 13 C -0.55 -31.29 9.11 25.60 0.23 -31.05 16 14 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 15 C 0.00 0.04 5.46 84.66 0.46 0.51 16 16 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 17 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 20 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 21 C -0.17 -5.07 9.64 22.36 0.22 -4.85 16 22 C -0.15 -2.16 4.49 30.59 0.14 -2.02 16 23 C -0.11 -1.35 5.65 30.59 0.17 -1.18 16 24 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 25 C -0.12 -1.25 5.65 30.59 0.17 -1.07 16 26 C -0.10 -1.44 4.99 30.59 0.15 -1.28 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.75 4.81 -2.39 -0.01 0.74 16 29 H 0.05 0.68 6.40 -2.39 -0.02 0.66 16 30 H 0.34 6.75 8.71 -89.69 -0.78 5.97 16 31 H 0.04 0.79 6.24 -2.39 -0.01 0.78 16 32 H 0.10 1.55 6.25 -2.38 -0.01 1.54 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.13 3.93 6.30 -2.91 -0.02 3.91 16 36 H 0.06 2.50 7.65 -2.39 -0.02 2.49 16 37 H 0.06 2.52 7.67 -2.39 -0.02 2.50 16 38 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.12 3.63 8.06 -2.91 -0.02 3.61 16 42 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.94 6.40 -2.39 -0.02 0.93 16 44 H 0.07 0.76 6.43 -2.38 -0.02 0.74 16 45 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 49 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -65.61 390.37 2.50 -63.11 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.12 Total: 20.92 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 3.88 Total: -41.92 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -2.60 Total: -71.94 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.94 Total: -15.99 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.61 2.50 -63.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236653994.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.185 kcal (2) G-P(sol) polarization free energy of solvation -65.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds