Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 C 1.53002 * 109.47452 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47116 * 300.00152 * 4 3 2 6 6 N 1.46900 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00195 * 154.99709 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.52998 * 109.47084 * 59.99622 * 5 4 3 26 26 C 1.52994 * 109.47250 * 300.00161 * 25 5 4 27 27 H 1.08994 * 109.47733 * 59.99963 * 1 2 3 28 28 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47224 * 299.99844 * 1 2 3 30 30 H 1.09001 * 109.47224 * 240.00155 * 2 1 3 31 31 H 1.09001 * 109.47322 * 60.00247 * 3 2 1 32 32 H 1.09003 * 109.47273 * 300.00352 * 3 2 1 33 33 H 1.08996 * 109.46942 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46647 * 59.99844 * 4 3 2 35 35 H 1.09001 * 109.47085 * 299.99965 * 5 4 3 36 36 H 1.00903 * 110.99490 * 31.04411 * 6 5 4 37 37 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 38 38 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 39 39 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 40 40 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 41 41 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 42 42 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 43 43 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 44 44 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 46 46 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 48 48 H 1.09001 * 109.46880 * 60.00217 * 25 5 4 49 49 H 1.09003 * 109.47273 * 179.97438 * 25 5 4 50 50 H 1.09001 * 109.47224 * 299.99844 * 26 25 5 51 51 H 1.09004 * 109.47061 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 7 5.5485 0.7210 1.2505 7 6 6.0746 0.6017 2.6168 8 6 7.5811 0.6041 2.5771 9 6 8.2708 -0.5882 2.4545 10 6 9.6528 -0.5893 2.4172 11 6 10.3481 0.6019 2.4975 12 6 9.6587 1.7987 2.6258 13 8 10.3406 2.9713 2.7098 14 6 11.7669 2.8970 2.6655 15 6 12.3546 4.3056 2.7719 16 6 13.8588 4.2273 2.7245 17 1 14.3468 3.2688 2.6277 18 6 14.6119 5.3795 2.8037 19 7 14.0176 6.5468 2.9211 20 14 16.4765 5.2824 2.7457 21 1 16.9334 5.3767 1.3358 22 1 17.0552 6.4030 3.5296 23 1 16.9232 3.9902 3.3253 24 6 8.2717 1.7972 2.6626 25 6 3.5695 -0.7210 1.2502 26 6 2.0395 -0.7210 1.2496 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9332 2.4702 0.0002 34 1 3.9336 0.9285 -0.8891 35 1 3.7158 1.2354 2.1400 36 1 5.9104 1.5450 0.7943 37 1 5.7247 -0.3303 3.0608 38 1 5.7253 1.4430 3.2155 39 1 7.7290 -1.5200 2.3869 40 1 10.1892 -1.5217 2.3210 41 1 11.4276 0.6009 2.4643 42 1 12.1252 2.2897 3.4967 43 1 12.0781 2.4441 1.7241 44 1 11.9963 4.9125 1.9404 45 1 12.0435 4.7590 3.7130 46 1 14.5474 7.3574 2.9764 47 1 7.7325 2.7281 2.7583 48 1 3.9332 -1.2350 0.3604 49 1 3.9328 -1.2349 2.1402 50 1 1.6758 -0.2071 2.1393 51 1 1.6762 -1.7487 1.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236690073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -55.011271 kcal Electronic energy + Delta-G solvation = -25400.322034 eV Core-core repulsion = 21876.849940 eV Total energy + Delta-G solvation = -3523.472093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.88517 -39.32781 -37.45969 -35.57677 -33.38657 -32.31610 -31.11999 -30.83604 -30.00068 -29.10082 -26.42637 -25.08404 -24.35099 -23.01595 -22.26496 -21.62201 -21.10744 -20.23395 -19.94091 -17.64819 -16.31807 -16.06674 -15.75342 -15.57209 -15.36815 -15.22958 -15.03635 -14.56616 -14.56017 -14.46732 -14.21389 -13.38059 -13.27137 -13.12778 -12.80114 -12.60223 -12.52207 -12.44127 -12.33119 -12.13609 -11.73737 -11.41598 -11.36946 -11.33003 -11.29359 -11.18887 -10.94277 -10.86301 -10.72241 -10.56330 -10.40726 -10.31312 -9.85346 -9.66176 -9.30560 -8.80485 -8.54009 -8.45323 -7.82010 -6.10951 -4.15619 1.45320 1.71643 3.27069 3.32996 3.35879 3.73364 3.85655 4.15512 4.31803 4.37267 4.40860 4.60200 4.72665 4.81149 4.87734 5.00873 5.09915 5.13894 5.18205 5.20760 5.21587 5.25491 5.29820 5.33432 5.43151 5.45715 5.50323 5.52908 5.58799 5.67622 5.70402 5.79451 5.83866 5.84306 5.90757 5.94217 6.00718 6.03611 6.07178 6.15627 6.20513 6.56440 6.57246 6.72522 6.73972 6.83898 7.01240 7.19651 7.50304 7.63385 7.81143 8.06582 8.23392 8.89934 9.48742 11.00592 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.001813 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.742619 B =15439.755475 C =16192.397288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.122 4.122 5 C 0.088 3.912 6 N -0.682 5.682 7 C 0.103 3.897 8 C -0.051 4.051 9 C -0.149 4.149 10 C -0.082 4.082 11 C -0.211 4.211 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 C -0.157 4.157 25 C -0.107 4.107 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.345 0.655 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.027 0.973 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.124 0.876 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.315 -15.404 -3.935 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.149 4.149 4 C -0.160 4.160 5 C -0.022 4.022 6 N -0.313 5.313 7 C -0.025 4.025 8 C -0.051 4.051 9 C -0.168 4.168 10 C -0.100 4.100 11 C -0.230 4.230 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.176 4.176 25 C -0.145 4.145 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.164 0.836 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.141 0.859 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.291 -15.663 -4.018 30.018 hybrid contribution 1.157 0.784 0.309 1.431 sum -24.134 -14.879 -3.708 28.593 Atomic orbital electron populations 1.21836 0.95408 1.01605 1.01687 1.21156 0.95234 0.96125 0.98669 1.21554 0.94985 0.96404 1.01953 1.21716 0.95713 1.00183 0.98389 1.21541 0.87198 0.96235 0.97202 1.60525 1.06646 1.46770 1.17383 1.20873 0.90530 1.01323 0.89814 1.19398 0.94401 0.92565 0.98759 1.20752 0.93833 0.97344 1.04836 1.20898 0.94118 0.97246 0.97712 1.21391 1.00779 0.92418 1.08374 1.19142 0.91796 0.85810 0.93471 1.86166 1.22757 1.27468 1.86595 1.23322 0.74629 1.03253 0.99657 1.19123 0.94877 0.88408 0.98793 1.20977 0.90472 0.93307 1.51766 0.92354 1.24992 0.99042 0.95261 0.94890 1.69980 1.35700 0.97761 1.49303 0.86481 0.84914 0.77802 0.78150 1.20488 1.21041 1.19759 1.20269 0.91337 0.98195 1.07795 1.21521 0.94305 0.96122 1.02520 1.21602 0.95625 1.00265 0.97720 0.92778 0.92772 0.92788 0.91129 0.92060 0.91823 0.91963 0.90970 0.93941 0.83593 0.90218 0.94348 0.86417 0.86201 0.85301 0.93151 0.93138 0.95414 0.95413 0.92715 0.85851 0.91249 0.92160 0.92199 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.15 0.34 -0.45 16 2 C -0.09 -0.57 2.72 -90.62 -0.25 -0.82 16 3 C -0.11 -0.71 5.20 -26.73 -0.14 -0.85 16 4 C -0.12 -0.90 5.19 -26.73 -0.14 -1.04 16 5 C 0.09 0.71 2.49 -67.71 -0.17 0.54 16 6 N -0.68 -6.62 6.30 -107.99 -0.68 -7.30 16 7 C 0.10 1.06 5.61 -4.98 -0.03 1.03 16 8 C -0.05 -0.65 5.39 -104.65 -0.56 -1.21 16 9 C -0.15 -1.88 9.70 -39.56 -0.38 -2.26 16 10 C -0.08 -1.09 10.04 -39.60 -0.40 -1.49 16 11 C -0.21 -3.35 9.04 -39.43 -0.36 -3.71 16 12 C 0.14 2.55 6.69 -39.22 -0.26 2.29 16 13 O -0.32 -6.59 10.14 -19.43 -0.20 -6.79 16 14 C 0.07 1.42 4.68 37.16 0.17 1.59 16 15 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 16 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 20 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 C -0.16 -2.37 9.64 -39.43 -0.38 -2.75 16 25 C -0.11 -0.81 5.42 -26.74 -0.15 -0.96 16 26 C -0.11 -0.73 5.20 -26.73 -0.14 -0.87 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.36 7.80 -51.93 -0.41 -0.04 16 36 H 0.35 3.46 8.34 -39.29 -0.33 3.13 16 37 H 0.08 0.75 7.38 -51.93 -0.38 0.37 16 38 H 0.04 0.38 8.00 -51.93 -0.42 -0.03 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 42 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 43 H 0.05 1.04 7.65 -51.93 -0.40 0.65 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.47 7.45 -51.93 -0.39 0.09 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.34 15.07 6.08 6.08 Total: -1.00 -29.63 403.34 -11.83 -41.46 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -9.35 Total: -0.05 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -3.39 Total: -23.91 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.06 Total: -33.07 kcal Atomic # 8 Polarization: -6.59 SS G_CDS: -0.20 Total: -6.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.63 -11.83 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236690073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.556 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds