Wall clock time and date at job start Tue Mar 31 2020 11:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 C 1.53002 * 109.47452 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47116 * 300.00152 * 4 3 2 6 6 N 1.46900 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.46896 * 111.00195 * 154.99709 * 6 5 4 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.52998 * 109.47084 * 59.99622 * 5 4 3 26 26 C 1.52994 * 109.47250 * 300.00161 * 25 5 4 27 27 H 1.08994 * 109.47733 * 59.99963 * 1 2 3 28 28 H 1.09004 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47224 * 299.99844 * 1 2 3 30 30 H 1.09001 * 109.47224 * 240.00155 * 2 1 3 31 31 H 1.09001 * 109.47322 * 60.00247 * 3 2 1 32 32 H 1.09003 * 109.47273 * 300.00352 * 3 2 1 33 33 H 1.08996 * 109.46942 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.46647 * 59.99844 * 4 3 2 35 35 H 1.09001 * 109.47085 * 299.99965 * 5 4 3 36 36 H 1.00903 * 110.99490 * 31.04411 * 6 5 4 37 37 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 38 38 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 39 39 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 40 40 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 41 41 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 42 42 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 43 43 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 44 44 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 45 45 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 46 46 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 47 47 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 48 48 H 1.09001 * 109.46880 * 60.00217 * 25 5 4 49 49 H 1.09003 * 109.47273 * 179.97438 * 25 5 4 50 50 H 1.09001 * 109.47224 * 299.99844 * 26 25 5 51 51 H 1.09004 * 109.47061 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0795 0.7214 1.2502 6 7 5.5485 0.7210 1.2505 7 6 6.0746 0.6017 2.6168 8 6 7.5811 0.6041 2.5771 9 6 8.2708 -0.5882 2.4545 10 6 9.6528 -0.5893 2.4172 11 6 10.3481 0.6019 2.4975 12 6 9.6587 1.7987 2.6258 13 8 10.3406 2.9713 2.7098 14 6 11.7669 2.8970 2.6655 15 6 12.3546 4.3056 2.7719 16 6 13.8588 4.2273 2.7245 17 1 14.3468 3.2688 2.6277 18 6 14.6119 5.3795 2.8037 19 7 14.0176 6.5468 2.9211 20 14 16.4765 5.2824 2.7457 21 1 16.9334 5.3767 1.3358 22 1 17.0552 6.4030 3.5296 23 1 16.9232 3.9902 3.3253 24 6 8.2717 1.7972 2.6626 25 6 3.5695 -0.7210 1.2502 26 6 2.0395 -0.7210 1.2496 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9332 2.4702 0.0002 34 1 3.9336 0.9285 -0.8891 35 1 3.7158 1.2354 2.1400 36 1 5.9104 1.5450 0.7943 37 1 5.7247 -0.3303 3.0608 38 1 5.7253 1.4430 3.2155 39 1 7.7290 -1.5200 2.3869 40 1 10.1892 -1.5217 2.3210 41 1 11.4276 0.6009 2.4643 42 1 12.1252 2.2897 3.4967 43 1 12.0781 2.4441 1.7241 44 1 11.9963 4.9125 1.9404 45 1 12.0435 4.7590 3.7130 46 1 14.5474 7.3574 2.9764 47 1 7.7325 2.7281 2.7583 48 1 3.9332 -1.2350 0.3604 49 1 3.9328 -1.2349 2.1402 50 1 1.6758 -0.2071 2.1393 51 1 1.6762 -1.7487 1.2500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236690073.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:06 Heat of formation + Delta-G solvation = -69.789946 kcal Electronic energy + Delta-G solvation = -25400.962885 eV Core-core repulsion = 21876.849940 eV Total energy + Delta-G solvation = -3524.112945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10536 -40.02733 -38.71619 -36.37560 -35.46514 -33.13890 -32.58646 -31.67630 -31.00897 -30.42108 -27.32185 -26.80310 -25.21161 -23.74141 -23.41180 -23.21211 -21.70408 -21.52154 -20.59176 -19.13195 -18.16287 -17.09215 -16.95689 -16.89714 -16.65429 -16.39487 -15.99265 -15.86082 -15.24204 -15.09262 -15.08583 -14.40336 -14.34614 -14.32791 -14.21142 -13.83378 -13.57321 -13.37334 -13.09033 -12.98854 -12.94335 -12.87620 -12.60131 -12.55224 -12.30527 -12.24478 -11.95058 -11.91695 -11.77399 -11.60668 -11.57359 -11.44598 -11.38421 -11.09339 -10.86971 -10.63125 -9.85814 -9.35599 -9.09516 -8.27749 -6.41675 0.33694 0.54179 1.40410 1.42718 1.53907 2.26209 2.50285 2.74934 3.06646 3.31214 3.73123 3.80308 3.88411 3.91115 4.06247 4.13042 4.21624 4.22321 4.25375 4.28115 4.37808 4.46272 4.51103 4.56835 4.57499 4.64414 4.66438 4.67041 4.72441 4.78667 4.84165 4.97123 5.00413 5.04996 5.10937 5.15377 5.24765 5.30330 5.31225 5.35087 5.42245 5.43447 5.45082 5.46902 5.52496 5.61859 5.65299 5.67676 5.90123 6.06317 6.11795 6.39774 6.56513 6.72966 7.28570 8.85322 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027264 B = 0.001813 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.742619 B =15439.755475 C =16192.397288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.108 4.108 4 C -0.120 4.120 5 C 0.089 3.911 6 N -0.686 5.686 7 C 0.108 3.892 8 C -0.044 4.044 9 C -0.140 4.140 10 C -0.079 4.079 11 C -0.222 4.222 12 C 0.106 3.894 13 O -0.342 6.342 14 C 0.085 3.915 15 C 0.028 3.972 16 C -0.548 4.548 17 H 0.071 0.929 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.977 3.023 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.164 4.164 25 C -0.103 4.103 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.341 0.659 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.126 0.874 42 H 0.059 0.941 43 H 0.059 0.941 44 H -0.002 1.002 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.122 0.878 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.815 -17.888 -4.138 31.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.146 4.146 4 C -0.158 4.158 5 C -0.020 4.020 6 N -0.317 5.317 7 C -0.020 4.020 8 C -0.045 4.045 9 C -0.158 4.158 10 C -0.097 4.097 11 C -0.241 4.241 12 C 0.061 3.939 13 O -0.257 6.257 14 C 0.011 3.989 15 C -0.009 4.009 16 C -0.586 4.586 17 H 0.089 0.911 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.183 1.183 24 C -0.184 4.184 25 C -0.141 4.141 26 C -0.149 4.149 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.016 0.984 45 H 0.017 0.983 46 H 0.076 0.924 47 H 0.140 0.860 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.817 -18.173 -4.223 31.853 hybrid contribution 1.152 1.493 0.359 1.920 sum -24.665 -16.680 -3.863 30.025 Atomic orbital electron populations 1.21815 0.94694 1.01966 1.01868 1.21143 0.95813 0.95714 0.98410 1.21539 0.94138 0.96792 1.02176 1.21687 0.96458 0.99815 0.97790 1.21573 0.86184 0.96809 0.97415 1.60563 1.07647 1.46618 1.16893 1.20863 0.88678 1.02206 0.90296 1.19678 0.95799 0.91797 0.97226 1.21157 0.93751 0.98272 1.02670 1.21245 0.94667 0.97366 0.96385 1.21499 1.00865 0.92797 1.08986 1.19480 0.92636 0.85351 0.96430 1.86076 1.21915 1.29776 1.87906 1.22846 0.75698 0.99969 1.00398 1.18966 0.95150 0.90843 0.95959 1.21404 0.91286 0.94082 1.51786 0.91120 1.26049 1.04838 0.94692 0.94093 1.70125 1.37988 0.98681 1.50154 0.85272 0.77825 0.78332 0.78552 1.19526 1.20608 1.18323 1.20424 0.90540 0.99351 1.08052 1.21483 0.95118 0.95401 1.02075 1.21577 0.94707 1.00741 0.97833 0.92535 0.92337 0.92693 0.91490 0.92032 0.91410 0.92262 0.91548 0.94062 0.84030 0.88711 0.94198 0.83524 0.83215 0.85590 0.92269 0.92286 0.98351 0.98332 0.92437 0.85965 0.92031 0.92175 0.92088 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 71.98 0.66 -0.66 16 2 C -0.09 -0.99 2.72 -10.80 -0.03 -1.02 16 3 C -0.11 -1.26 5.20 30.59 0.16 -1.10 16 4 C -0.12 -1.66 5.19 30.60 0.16 -1.50 16 5 C 0.09 1.33 2.49 44.92 0.11 1.44 16 6 N -0.69 -12.34 6.30 -495.58 -3.12 -15.46 16 7 C 0.11 2.01 5.61 85.56 0.48 2.49 16 8 C -0.04 -1.07 5.39 -19.88 -0.11 -1.18 16 9 C -0.14 -3.12 9.70 22.28 0.22 -2.91 16 10 C -0.08 -1.92 10.04 22.26 0.22 -1.70 16 11 C -0.22 -6.96 9.04 22.36 0.20 -6.75 16 12 C 0.11 3.82 6.69 22.50 0.15 3.97 16 13 O -0.34 -14.91 10.14 -92.43 -0.94 -15.85 16 14 C 0.09 3.82 4.68 71.98 0.34 4.16 16 15 C 0.03 1.56 5.34 29.85 0.16 1.72 16 16 C -0.55 -31.27 9.11 25.60 0.23 -31.04 16 17 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 20 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 24 C -0.16 -5.00 9.64 22.37 0.22 -4.78 16 25 C -0.10 -1.38 5.42 30.59 0.17 -1.21 16 26 C -0.11 -1.21 5.20 30.59 0.16 -1.05 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.04 0.64 7.80 -2.39 -0.02 0.62 16 36 H 0.34 6.60 8.34 -89.69 -0.75 5.85 16 37 H 0.09 1.51 7.38 -2.38 -0.02 1.49 16 38 H 0.04 0.74 8.00 -2.39 -0.02 0.72 16 39 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 40 H 0.15 2.72 8.06 -2.92 -0.02 2.70 16 41 H 0.13 3.92 6.30 -2.91 -0.02 3.90 16 42 H 0.06 2.50 7.67 -2.39 -0.02 2.48 16 43 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.12 3.62 8.06 -2.91 -0.02 3.60 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.81 7.45 -2.39 -0.02 0.79 16 50 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -65.24 403.34 2.34 -62.90 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.13 Total: 19.89 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 3.96 Total: -40.55 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.84 Total: -72.11 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.94 Total: -15.85 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -65.24 2.34 -62.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236690073.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.893 kcal (2) G-P(sol) polarization free energy of solvation -65.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds