Wall clock time and date at job start Tue Mar 31 2020 11:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46789 * 269.99839 * 3 2 1 5 5 H 1.48494 * 109.47222 * 29.99421 * 3 2 1 6 6 H 1.48498 * 109.47502 * 149.99973 * 3 2 1 7 7 C 1.37881 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99482 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46952 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99948 * 180.02562 * 11 10 9 13 13 C 1.38752 * 120.05158 * 0.02585 * 12 11 10 14 14 C 1.38129 * 119.94076 * 179.97438 * 13 12 11 15 15 C 1.38293 * 120.05357 * 359.75027 * 14 13 12 16 16 C 1.38245 * 120.10972 * 0.50107 * 15 14 13 17 17 C 1.50706 * 119.96894 * 179.76723 * 16 15 14 18 18 N 1.46894 * 109.47092 * 269.72960 * 17 16 15 19 19 C 1.46904 * 110.99689 * 180.02562 * 18 17 16 20 20 C 1.50474 * 109.62811 * 85.96055 * 19 18 17 21 21 C 1.54071 * 112.50056 * 213.85502 * 20 19 18 22 22 C 1.54063 * 112.81676 * 318.28858 * 21 20 19 23 23 C 1.50476 * 112.49675 * 318.27911 * 22 21 20 24 24 C 1.54245 * 108.51279 * 94.15799 * 23 22 21 25 25 C 1.45537 * 112.40728 * 280.00235 * 24 23 22 26 26 C 1.38161 * 120.05504 * 359.49996 * 16 15 14 27 27 H 0.97001 * 120.00332 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47163 * 60.00520 * 9 7 2 29 29 H 1.08992 * 109.47849 * 300.00200 * 9 7 2 30 30 H 1.09002 * 109.46632 * 60.00354 * 10 9 7 31 31 H 1.08992 * 109.47648 * 300.00663 * 10 9 7 32 32 H 1.07997 * 120.03406 * 359.95122 * 13 12 11 33 33 H 1.07996 * 119.97553 * 180.02562 * 14 13 12 34 34 H 1.07995 * 119.94130 * 180.27816 * 15 14 13 35 35 H 1.08997 * 109.46592 * 149.72461 * 17 16 15 36 36 H 1.09000 * 109.46795 * 29.72985 * 17 16 15 37 37 H 1.00898 * 111.00264 * 303.94913 * 18 17 16 38 38 H 1.09004 * 109.78219 * 325.48109 * 19 18 17 39 39 H 1.08996 * 108.87573 * 334.63941 * 20 19 18 40 40 H 1.08998 * 108.87259 * 93.18075 * 20 19 18 41 41 H 1.08994 * 108.81493 * 197.42170 * 21 20 19 42 42 H 1.09007 * 108.81008 * 79.14598 * 21 20 19 43 43 H 1.09002 * 108.87867 * 197.50178 * 22 21 20 44 44 H 1.09000 * 108.87817 * 79.05963 * 22 21 20 45 45 H 1.08996 * 109.62739 * 213.86202 * 23 22 21 46 46 H 1.08997 * 109.62762 * 334.25700 * 23 22 21 47 47 H 1.09006 * 108.89114 * 40.75619 * 24 23 22 48 48 H 1.09001 * 108.89095 * 159.24371 * 24 23 22 49 49 H 1.08998 * 108.89158 * 182.69134 * 25 24 23 50 50 H 1.09004 * 108.89687 * 301.18438 * 25 24 23 51 51 H 1.08005 * 120.02671 * 180.23156 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 8 5.4506 -2.6364 0.0002 12 6 6.0676 -3.8473 0.0007 13 6 5.3130 -5.0117 0.0017 14 6 5.9425 -6.2412 0.0017 15 6 7.3236 -6.3122 -0.0046 16 6 8.0776 -5.1534 -0.0004 17 6 9.5825 -5.2345 -0.0019 18 7 10.0729 -5.2601 1.3825 19 6 11.5394 -5.3385 1.4201 20 6 12.1219 -3.9538 1.3326 21 6 13.4570 -3.9234 0.5642 22 6 14.3792 -5.1047 0.9217 23 6 14.3888 -5.4017 2.3968 24 6 13.3458 -6.5018 2.6817 25 6 11.9902 -5.9768 2.7499 26 6 7.4527 -3.9212 -0.0003 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1512 -0.8880 31 1 3.6586 -3.1494 0.8919 32 1 4.2344 -4.9568 0.0029 33 1 5.3557 -7.1478 0.0021 34 1 7.8139 -7.2744 -0.0091 35 1 9.9925 -4.3657 -0.5168 36 1 9.8968 -6.1431 -0.5156 37 1 9.7406 -4.4594 1.8987 38 1 11.8982 -5.9401 0.5850 39 1 11.4090 -3.3026 0.8269 40 1 12.2888 -3.5771 2.3417 41 1 13.9739 -2.9918 0.7943 42 1 13.2478 -3.9519 -0.5052 43 1 15.3944 -4.8686 0.6029 44 1 14.0405 -5.9912 0.3856 45 1 15.3782 -5.7494 2.6938 46 1 14.1351 -4.4996 2.9536 47 1 13.3956 -7.2490 1.8895 48 1 13.5875 -6.9799 3.6310 49 1 11.3089 -6.7900 2.9999 50 1 11.9423 -5.2241 3.5369 51 1 8.0422 -3.0163 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237818738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:57 Heat of formation + Delta-G solvation = -42.845662 kcal Electronic energy + Delta-G solvation = -25750.009238 eV Core-core repulsion = 22227.064686 eV Total energy + Delta-G solvation = -3522.944553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01052 -39.51642 -37.53211 -35.50386 -33.36063 -32.81847 -32.06919 -31.10549 -29.77928 -29.18510 -25.88932 -25.01362 -24.95382 -23.49910 -22.29924 -21.50336 -20.86746 -20.11100 -19.75441 -17.72536 -16.69332 -16.34985 -15.88511 -15.67973 -15.45839 -15.31004 -15.09378 -15.04870 -14.37579 -14.28169 -14.14116 -13.76063 -13.44968 -13.20567 -12.94900 -12.85065 -12.61189 -12.44920 -12.37458 -12.24137 -11.69355 -11.50512 -11.45946 -11.33818 -11.16126 -11.02860 -10.82911 -10.81262 -10.71918 -10.59502 -10.44406 -10.19323 -10.00170 -9.82615 -9.35803 -8.85421 -8.63771 -8.54708 -7.89573 -6.14753 -4.15706 1.40268 1.65683 3.27278 3.34586 3.39938 3.67791 3.78371 4.12530 4.24075 4.37759 4.38802 4.54460 4.72798 4.78275 4.83300 4.84053 4.94941 4.96261 5.07440 5.11911 5.19273 5.21996 5.28714 5.39519 5.42503 5.47343 5.56587 5.58443 5.60816 5.64354 5.77800 5.79050 5.81966 5.84955 5.87913 5.91205 5.95647 5.97778 6.05768 6.06492 6.14300 6.40690 6.50993 6.63362 6.67935 6.80453 6.90149 7.10474 7.17036 7.21666 7.61229 7.91308 8.37451 8.85930 9.45451 10.97720 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002092 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.990002 B =13383.322975 C =14362.375881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.073 3.927 11 O -0.321 6.321 12 C 0.144 3.856 13 C -0.209 4.209 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.051 4.051 17 C 0.103 3.897 18 N -0.680 5.680 19 C 0.091 3.909 20 C -0.150 4.150 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.108 4.108 26 C -0.157 4.157 27 H 0.266 0.734 28 H 0.027 0.973 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.039 0.961 36 H 0.079 0.921 37 H 0.344 0.656 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.057 0.943 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.787 -13.757 2.526 32.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.046 4.046 10 C -0.001 4.001 11 O -0.234 6.234 12 C 0.097 3.903 13 C -0.228 4.228 14 C -0.099 4.099 15 C -0.166 4.166 16 C -0.051 4.051 17 C -0.025 4.025 18 N -0.310 5.310 19 C -0.019 4.019 20 C -0.189 4.189 21 C -0.152 4.152 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.176 4.176 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.163 0.837 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.076 0.924 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 28.596 -14.114 2.595 31.995 hybrid contribution 0.238 1.726 -0.302 1.768 sum 28.834 -12.388 2.292 31.466 Atomic orbital electron populations 1.69889 1.06263 1.27219 1.50154 1.24937 0.94770 0.99209 0.94118 0.86755 0.80450 0.83292 0.78754 1.20069 1.21158 1.18773 1.20841 0.88333 0.94942 1.52372 0.90737 1.19582 0.96921 0.90261 0.97853 1.23074 0.74652 1.01910 1.00505 1.86115 1.24009 1.25985 1.87319 1.19092 0.92149 0.85171 0.93895 1.21415 1.00728 0.92406 1.08229 1.20919 0.94500 0.96941 0.97529 1.20777 0.93481 0.97624 1.04728 1.19403 0.94552 0.92391 0.98798 1.20845 0.90596 1.01144 0.89948 1.60626 1.08616 1.48839 1.12912 1.21317 0.86750 0.95301 0.98548 1.22164 0.97170 0.98272 1.01263 1.21844 0.95175 0.98393 0.99765 1.21352 0.99188 0.98561 0.96599 1.21366 0.98800 0.99138 0.96401 1.20464 0.94967 0.98059 1.01858 1.20446 0.96363 1.01176 0.96656 1.20244 0.91709 0.97706 1.07923 0.92439 0.95439 0.95877 0.92550 0.92487 0.85156 0.86078 0.86327 0.94321 0.90220 0.83699 0.90284 0.92172 0.91692 0.92332 0.92394 0.92456 0.92083 0.92159 0.91628 0.92198 0.92195 0.91043 0.92430 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.53 -14.88 9.66 -34.44 -0.33 -15.21 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 10 C 0.07 1.50 4.68 37.16 0.17 1.68 16 11 O -0.32 -6.30 10.14 -19.43 -0.20 -6.50 16 12 C 0.14 2.42 6.69 -39.22 -0.26 2.16 16 13 C -0.21 -3.22 9.04 -39.43 -0.36 -3.58 16 14 C -0.08 -1.05 10.04 -39.60 -0.40 -1.45 16 15 C -0.15 -1.79 9.70 -39.56 -0.38 -2.17 16 16 C -0.05 -0.62 5.39 -104.64 -0.56 -1.19 16 17 C 0.10 0.99 5.54 -4.98 -0.03 0.96 16 18 N -0.68 -6.22 6.16 -108.64 -0.67 -6.89 16 19 C 0.09 0.68 2.15 -68.32 -0.15 0.53 16 20 C -0.15 -1.07 4.72 -27.43 -0.13 -1.20 16 21 C -0.11 -0.73 5.85 -25.62 -0.15 -0.88 16 22 C -0.12 -0.70 5.31 -27.44 -0.15 -0.84 16 23 C -0.12 -0.69 5.60 -27.34 -0.15 -0.84 16 24 C -0.12 -0.70 5.26 -29.60 -0.16 -0.86 16 25 C -0.11 -0.77 4.90 -29.60 -0.15 -0.92 16 26 C -0.16 -2.25 9.64 -39.44 -0.38 -2.63 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 29 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 30 H 0.06 1.13 7.66 -51.93 -0.40 0.73 16 31 H 0.06 1.14 7.66 -51.93 -0.40 0.74 16 32 H 0.13 2.00 6.30 -52.49 -0.33 1.67 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.04 0.36 7.49 -51.93 -0.39 -0.03 16 36 H 0.08 0.71 8.00 -51.93 -0.42 0.29 16 37 H 0.34 3.29 8.41 -39.29 -0.33 2.96 16 38 H 0.08 0.61 6.65 -51.93 -0.35 0.27 16 39 H 0.06 0.48 7.23 -51.93 -0.38 0.10 16 40 H 0.06 0.47 6.63 -51.93 -0.34 0.12 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.36 6.63 -51.93 -0.34 0.02 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.40 6.99 -51.93 -0.36 0.04 16 47 H 0.06 0.36 7.47 -51.93 -0.39 -0.02 16 48 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 50 H 0.06 0.42 7.47 -51.93 -0.39 0.03 16 51 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -29.80 391.20 -11.61 -41.41 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.97 Total: 0.40 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -3.78 Total: -24.77 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.10 Total: -33.37 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.20 Total: -6.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.80 -11.61 -41.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237818738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.435 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds