Wall clock time and date at job start Tue Mar 31 2020 11:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46789 * 269.99839 * 3 2 1 5 5 H 1.48494 * 109.47222 * 29.99421 * 3 2 1 6 6 H 1.48498 * 109.47502 * 149.99973 * 3 2 1 7 7 C 1.37881 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99482 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00047 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46952 * 179.97438 * 9 7 2 11 11 O 1.42904 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.35902 * 116.99948 * 180.02562 * 11 10 9 13 13 C 1.38752 * 120.05158 * 0.02585 * 12 11 10 14 14 C 1.38129 * 119.94076 * 179.97438 * 13 12 11 15 15 C 1.38293 * 120.05357 * 359.75027 * 14 13 12 16 16 C 1.38245 * 120.10972 * 0.50107 * 15 14 13 17 17 C 1.50706 * 119.96894 * 179.76723 * 16 15 14 18 18 N 1.46894 * 109.47092 * 269.72960 * 17 16 15 19 19 C 1.46904 * 110.99689 * 180.02562 * 18 17 16 20 20 C 1.50474 * 109.62811 * 85.96055 * 19 18 17 21 21 C 1.54071 * 112.50056 * 213.85502 * 20 19 18 22 22 C 1.54063 * 112.81676 * 318.28858 * 21 20 19 23 23 C 1.50476 * 112.49675 * 318.27911 * 22 21 20 24 24 C 1.54245 * 108.51279 * 94.15799 * 23 22 21 25 25 C 1.45537 * 112.40728 * 280.00235 * 24 23 22 26 26 C 1.38161 * 120.05504 * 359.49996 * 16 15 14 27 27 H 0.97001 * 120.00332 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47163 * 60.00520 * 9 7 2 29 29 H 1.08992 * 109.47849 * 300.00200 * 9 7 2 30 30 H 1.09002 * 109.46632 * 60.00354 * 10 9 7 31 31 H 1.08992 * 109.47648 * 300.00663 * 10 9 7 32 32 H 1.07997 * 120.03406 * 359.95122 * 13 12 11 33 33 H 1.07996 * 119.97553 * 180.02562 * 14 13 12 34 34 H 1.07995 * 119.94130 * 180.27816 * 15 14 13 35 35 H 1.08997 * 109.46592 * 149.72461 * 17 16 15 36 36 H 1.09000 * 109.46795 * 29.72985 * 17 16 15 37 37 H 1.00898 * 111.00264 * 303.94913 * 18 17 16 38 38 H 1.09004 * 109.78219 * 325.48109 * 19 18 17 39 39 H 1.08996 * 108.87573 * 334.63941 * 20 19 18 40 40 H 1.08998 * 108.87259 * 93.18075 * 20 19 18 41 41 H 1.08994 * 108.81493 * 197.42170 * 21 20 19 42 42 H 1.09007 * 108.81008 * 79.14598 * 21 20 19 43 43 H 1.09002 * 108.87867 * 197.50178 * 22 21 20 44 44 H 1.09000 * 108.87817 * 79.05963 * 22 21 20 45 45 H 1.08996 * 109.62739 * 213.86202 * 23 22 21 46 46 H 1.08997 * 109.62762 * 334.25700 * 23 22 21 47 47 H 1.09006 * 108.89114 * 40.75619 * 24 23 22 48 48 H 1.09001 * 108.89095 * 159.24371 * 24 23 22 49 49 H 1.08998 * 108.89158 * 182.69134 * 25 24 23 50 50 H 1.09004 * 108.89687 * 301.18438 * 25 24 23 51 51 H 1.08005 * 120.02671 * 180.23156 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 8 5.4506 -2.6364 0.0002 12 6 6.0676 -3.8473 0.0007 13 6 5.3130 -5.0117 0.0017 14 6 5.9425 -6.2412 0.0017 15 6 7.3236 -6.3122 -0.0046 16 6 8.0776 -5.1534 -0.0004 17 6 9.5825 -5.2345 -0.0019 18 7 10.0729 -5.2601 1.3825 19 6 11.5394 -5.3385 1.4201 20 6 12.1219 -3.9538 1.3326 21 6 13.4570 -3.9234 0.5642 22 6 14.3792 -5.1047 0.9217 23 6 14.3888 -5.4017 2.3968 24 6 13.3458 -6.5018 2.6817 25 6 11.9902 -5.9768 2.7499 26 6 7.4527 -3.9212 -0.0003 27 1 -0.4851 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6579 -3.1512 -0.8880 31 1 3.6586 -3.1494 0.8919 32 1 4.2344 -4.9568 0.0029 33 1 5.3557 -7.1478 0.0021 34 1 7.8139 -7.2744 -0.0091 35 1 9.9925 -4.3657 -0.5168 36 1 9.8968 -6.1431 -0.5156 37 1 9.7406 -4.4594 1.8987 38 1 11.8982 -5.9401 0.5850 39 1 11.4090 -3.3026 0.8269 40 1 12.2888 -3.5771 2.3417 41 1 13.9739 -2.9918 0.7943 42 1 13.2478 -3.9519 -0.5052 43 1 15.3944 -4.8686 0.6029 44 1 14.0405 -5.9912 0.3856 45 1 15.3782 -5.7494 2.6938 46 1 14.1351 -4.4996 2.9536 47 1 13.3956 -7.2490 1.8895 48 1 13.5875 -6.9799 3.6310 49 1 11.3089 -6.7900 2.9999 50 1 11.9423 -5.2241 3.5369 51 1 8.0422 -3.0163 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237818738.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:56 Heat of formation + Delta-G solvation = -58.306468 kcal Electronic energy + Delta-G solvation = -25750.679669 eV Core-core repulsion = 22227.064686 eV Total energy + Delta-G solvation = -3523.614984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.12930 -40.21682 -38.72773 -36.25839 -35.41333 -33.33405 -32.94755 -32.89566 -30.92204 -30.15852 -27.25340 -26.31297 -25.46550 -24.22288 -23.38314 -23.03824 -21.72682 -21.24955 -20.29992 -19.32063 -18.40488 -17.03322 -17.00135 -16.93570 -16.83485 -16.34874 -16.02367 -15.72404 -15.64006 -15.25399 -14.94108 -14.75766 -14.52528 -14.36755 -14.23672 -14.06851 -13.77855 -13.33475 -13.19126 -13.08960 -12.93263 -12.85841 -12.54194 -12.48254 -12.19371 -11.99768 -11.97931 -11.77725 -11.65959 -11.57061 -11.51911 -11.42599 -11.27363 -11.20075 -10.97435 -10.83430 -9.86596 -9.29702 -9.10457 -8.36606 -6.43542 0.33564 0.53640 1.34465 1.35973 1.48715 2.31467 2.31551 2.75116 2.98153 3.34843 3.70003 3.80696 3.87385 3.89967 4.05654 4.13596 4.19619 4.19945 4.26180 4.28816 4.31790 4.37916 4.44305 4.46121 4.54166 4.58374 4.60969 4.63933 4.68851 4.78686 4.91555 5.04005 5.06433 5.07644 5.10811 5.13206 5.27642 5.28789 5.30682 5.36618 5.38509 5.40634 5.44370 5.47798 5.52072 5.54272 5.58970 5.66007 5.88968 6.13966 6.14926 6.43132 6.52030 6.61960 7.21592 8.79038 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.002092 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.990002 B =13383.322975 C =14362.375881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.538 4.538 8 H 0.042 0.958 9 C -0.006 4.006 10 C 0.088 3.912 11 O -0.337 6.337 12 C 0.108 3.892 13 C -0.224 4.224 14 C -0.081 4.081 15 C -0.140 4.140 16 C -0.045 4.045 17 C 0.108 3.892 18 N -0.685 5.685 19 C 0.095 3.905 20 C -0.145 4.145 21 C -0.112 4.112 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.103 4.103 26 C -0.160 4.160 27 H 0.270 0.730 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.341 0.659 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.710 -14.455 2.460 34.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.576 4.576 8 H 0.060 0.940 9 C -0.043 4.043 10 C 0.013 3.987 11 O -0.251 6.251 12 C 0.063 3.937 13 C -0.243 4.243 14 C -0.099 4.099 15 C -0.158 4.158 16 C -0.045 4.045 17 C -0.020 4.020 18 N -0.315 5.315 19 C -0.014 4.014 20 C -0.184 4.184 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.180 4.180 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.061 0.939 36 H 0.112 0.888 37 H 0.159 0.841 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 31.542 -14.838 2.527 34.949 hybrid contribution -0.621 1.778 -0.269 1.902 sum 30.921 -13.060 2.259 33.642 Atomic orbital electron populations 1.70021 1.08073 1.28529 1.51455 1.25888 0.95654 1.03327 0.93635 0.85672 0.79404 0.78287 0.79427 1.18921 1.20366 1.17481 1.21107 0.90505 0.93902 1.52052 0.94015 1.19439 0.94393 0.92710 0.97780 1.22650 0.75978 0.99507 1.00573 1.86023 1.22702 1.27920 1.88458 1.19413 0.93145 0.84537 0.96636 1.21494 1.00475 0.93159 1.09188 1.21230 0.95305 0.96832 0.96490 1.21162 0.93180 0.98762 1.02711 1.19696 0.96058 0.91571 0.97184 1.20834 0.88660 1.02066 0.90442 1.60649 1.09648 1.48690 1.12485 1.21307 0.85751 0.95527 0.98836 1.22104 0.97381 0.97807 1.01153 1.21835 0.94856 0.98798 0.99577 1.21343 0.99333 0.98239 0.96632 1.21351 0.99076 0.98806 0.96291 1.20440 0.94347 0.98174 1.02219 1.20403 0.96813 1.00649 0.96251 1.20416 0.90750 0.98976 1.07820 0.92066 0.95453 0.95525 0.92517 0.92555 0.86002 0.83565 0.83589 0.93933 0.88790 0.84108 0.90020 0.93004 0.91913 0.92297 0.92439 0.91876 0.91991 0.91392 0.92106 0.91949 0.91769 0.91983 0.92840 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 2 C 0.01 0.77 5.47 84.66 0.46 1.24 16 3 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.54 -31.16 9.66 25.60 0.25 -30.91 16 8 H 0.04 2.61 7.99 -2.91 -0.02 2.58 16 9 C -0.01 -0.28 4.41 29.85 0.13 -0.15 16 10 C 0.09 3.70 4.68 71.98 0.34 4.04 16 11 O -0.34 -13.36 10.14 -92.45 -0.94 -14.30 16 12 C 0.11 3.64 6.69 22.50 0.15 3.79 16 13 C -0.22 -6.87 9.04 22.37 0.20 -6.66 16 14 C -0.08 -1.94 10.04 22.26 0.22 -1.72 16 15 C -0.14 -2.99 9.70 22.28 0.22 -2.78 16 16 C -0.04 -1.00 5.39 -19.88 -0.11 -1.10 16 17 C 0.11 1.82 5.54 85.56 0.47 2.29 16 18 N -0.68 -11.19 6.16 -497.64 -3.07 -14.25 16 19 C 0.10 1.25 2.15 44.52 0.10 1.35 16 20 C -0.15 -1.86 4.72 30.14 0.14 -1.72 16 21 C -0.11 -1.26 5.85 31.32 0.18 -1.07 16 22 C -0.12 -1.14 5.31 30.14 0.16 -0.98 16 23 C -0.12 -1.13 5.60 30.20 0.17 -0.96 16 24 C -0.11 -1.16 5.26 28.74 0.15 -1.01 16 25 C -0.10 -1.30 4.90 28.73 0.14 -1.16 16 26 C -0.16 -4.48 9.64 22.36 0.22 -4.26 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 29 H 0.03 1.27 7.57 -2.39 -0.02 1.26 16 30 H 0.06 2.35 7.66 -2.39 -0.02 2.33 16 31 H 0.06 2.34 7.66 -2.39 -0.02 2.32 16 32 H 0.12 3.84 6.30 -2.91 -0.02 3.82 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.04 0.70 7.49 -2.39 -0.02 0.68 16 36 H 0.09 1.35 8.00 -2.39 -0.02 1.33 16 37 H 0.34 6.04 8.41 -89.70 -0.75 5.29 16 38 H 0.08 1.06 6.65 -2.38 -0.02 1.05 16 39 H 0.05 0.76 7.23 -2.39 -0.02 0.74 16 40 H 0.06 0.83 6.63 -2.39 -0.02 0.82 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.60 6.63 -2.39 -0.02 0.58 16 45 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 0.65 6.99 -2.39 -0.02 0.63 16 47 H 0.06 0.62 7.47 -2.38 -0.02 0.60 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 50 H 0.05 0.72 7.47 -2.39 -0.02 0.70 16 51 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -64.58 391.20 1.86 -62.72 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.08 Total: 19.42 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.60 Total: -41.78 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.77 Total: -72.37 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.94 Total: -14.30 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -64.58 1.86 -62.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237818738.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.409 kcal (2) G-P(sol) polarization free energy of solvation -64.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds