Wall clock time and date at job start Tue Mar 31 2020 11:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38256 * 120.00102 * 2 1 4 4 C 1.38215 * 120.00054 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99681 * 359.96186 * 5 4 3 7 7 C 1.50706 * 119.99654 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 89.99873 * 7 6 5 9 9 O 1.42902 * 109.52272 * 64.99623 * 8 7 6 10 10 C 1.53120 * 109.52401 * 304.87298 * 8 7 6 11 11 C 1.53046 * 109.27522 * 182.50190 * 10 8 7 12 12 N 1.46845 * 109.57191 * 59.08366 * 11 10 8 13 13 C 1.46904 * 110.99729 * 174.19052 * 12 11 10 14 14 C 1.52997 * 109.47086 * 294.21067 * 13 12 11 15 15 C 1.53002 * 109.47213 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47596 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99567 * 0.02562 * 16 15 14 18 18 C 1.37867 * 120.00197 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00467 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00146 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46820 * 59.99770 * 20 18 16 22 22 H 1.48499 * 109.47231 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47246 * 300.00378 * 20 18 16 24 24 C 1.46848 * 111.19974 * 298.28806 * 12 11 10 25 25 C 1.53036 * 109.52371 * 61.74310 * 24 12 11 26 26 C 1.38217 * 119.99838 * 180.21254 * 2 1 3 27 27 H 1.08992 * 109.47410 * 89.99846 * 1 2 3 28 28 H 1.09004 * 109.47521 * 210.00509 * 1 2 3 29 29 H 1.09005 * 109.47014 * 329.99719 * 1 2 3 30 30 H 1.08001 * 120.00264 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.00496 * 179.97438 * 4 3 2 32 32 H 1.08004 * 120.00633 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46646 * 209.99287 * 7 6 5 34 34 H 1.09000 * 109.47248 * 330.00004 * 7 6 5 35 35 H 0.96701 * 114.00492 * 300.00364 * 9 8 7 36 36 H 1.09001 * 109.49856 * 302.38151 * 10 8 7 37 37 H 1.09000 * 109.50637 * 62.49731 * 10 8 7 38 38 H 1.08996 * 109.40771 * 299.06907 * 11 10 8 39 39 H 1.08998 * 109.45724 * 179.12798 * 11 10 8 40 40 H 1.08998 * 109.46747 * 54.20979 * 13 12 11 41 41 H 1.09003 * 109.46956 * 174.21053 * 13 12 11 42 42 H 1.09004 * 109.46936 * 299.99893 * 14 13 12 43 43 H 1.08993 * 109.47245 * 60.00185 * 14 13 12 44 44 H 1.09004 * 109.46964 * 299.99732 * 15 14 13 45 45 H 1.09003 * 109.46938 * 59.99322 * 15 14 13 46 46 H 0.96997 * 120.00399 * 179.97438 * 19 18 16 47 47 H 1.09006 * 109.45817 * 301.72904 * 24 12 11 48 48 H 1.08996 * 109.45072 * 181.75767 * 24 12 11 49 49 H 1.08998 * 109.50484 * 180.88209 * 25 24 12 50 50 H 1.09002 * 109.50260 * 60.76504 * 25 24 12 51 51 H 1.07998 * 119.99828 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5805 -1.1970 0.0008 7 6 4.3341 -2.5021 0.0002 8 6 4.5911 -2.9433 1.4425 9 8 3.3461 -3.2265 2.0843 10 6 5.3138 -1.8250 2.1986 11 6 5.6235 -2.2956 3.6217 12 7 6.4627 -3.4995 3.5700 13 6 6.8933 -3.8992 4.9164 14 6 7.8195 -2.8276 5.4948 15 6 8.2685 -3.2443 6.8969 16 6 9.1813 -2.1891 7.4664 17 1 9.4173 -1.3091 6.8865 18 6 9.7143 -2.3467 8.7281 19 7 9.4257 -3.4175 9.4349 20 14 10.8464 -1.0390 9.4338 21 1 10.1215 0.2548 9.5095 22 1 11.2810 -1.4428 10.7951 23 1 12.0362 -0.8892 8.5578 24 6 5.7695 -4.6013 2.8903 25 6 5.4655 -4.2002 1.4451 26 6 2.1980 -1.1970 -0.0044 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6583 2.1327 0.0004 31 1 4.1205 2.1326 -0.0010 32 1 5.3517 -0.0001 -0.0014 33 1 3.7442 -3.2619 -0.5125 34 1 5.2858 -2.3720 -0.5149 35 1 2.7417 -2.4725 2.1204 36 1 6.2445 -1.5817 1.6860 37 1 4.6770 -0.9412 2.2371 38 1 4.6915 -2.5245 4.1383 39 1 6.1518 -1.5073 4.1578 40 1 6.0199 -4.0100 5.5591 41 1 7.4262 -4.8485 4.8606 42 1 8.6929 -2.7168 4.8520 43 1 7.2867 -1.8785 5.5506 44 1 7.3953 -3.3554 7.5399 45 1 8.8014 -4.1934 6.8406 46 1 9.8010 -3.5285 10.3224 47 1 4.8368 -4.8193 3.4106 48 1 6.4041 -5.4875 2.8955 49 1 4.9371 -5.0121 0.9455 50 1 6.3987 -3.9953 0.9203 51 1 1.6579 -2.1323 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280584100.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:49 Heat of formation + Delta-G solvation = -52.589151 kcal Electronic energy + Delta-G solvation = -26731.139057 eV Core-core repulsion = 23207.771995 eV Total energy + Delta-G solvation = -3523.367062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48793 -39.03928 -36.67148 -33.93662 -33.73954 -32.46329 -31.99124 -30.78964 -30.44293 -27.82046 -27.12411 -25.79099 -23.40221 -23.27972 -22.27602 -21.67903 -20.51069 -19.81381 -19.70971 -16.76353 -16.51312 -16.38634 -15.92825 -15.63805 -15.33616 -14.95911 -14.46120 -14.31720 -14.25312 -14.08408 -13.85878 -13.72219 -13.39863 -13.16505 -12.80320 -12.59130 -12.41974 -12.25005 -12.05091 -11.97843 -11.78971 -11.48902 -11.32798 -11.29624 -11.13074 -11.09402 -11.06220 -10.72713 -10.53429 -10.47906 -10.19138 -9.93070 -9.50069 -9.26557 -9.06245 -9.00001 -8.78641 -8.29544 -7.92536 -5.95050 -3.97012 1.05573 1.10035 3.36361 3.40308 3.43111 3.44322 4.04690 4.27100 4.36714 4.49922 4.50960 4.60900 4.70020 4.77658 4.83295 4.95290 5.03202 5.11952 5.23072 5.25492 5.32115 5.40440 5.41842 5.48680 5.50492 5.52117 5.59665 5.66889 5.75027 5.78838 5.83371 5.91377 5.92379 5.95848 6.11690 6.16046 6.19142 6.21488 6.29813 6.32633 6.36189 6.40794 6.74013 6.78674 6.85939 7.19800 7.48621 7.51265 7.54144 7.73876 7.89932 8.05860 8.49304 9.10062 9.66565 11.16399 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017461 B = 0.002442 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.229266 B =11464.966014 C =12357.203649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.078 4.078 7 C -0.108 4.108 8 C 0.140 3.860 9 O -0.555 6.555 10 C -0.139 4.139 11 C 0.057 3.943 12 N -0.538 5.538 13 C 0.057 3.943 14 C -0.104 4.104 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.057 3.943 25 C -0.098 4.098 26 C -0.123 4.123 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.370 0.630 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.260 0.740 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 4.661 -23.534 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.078 4.078 7 C -0.145 4.145 8 C 0.099 3.901 9 O -0.361 6.361 10 C -0.177 4.177 11 C -0.071 4.071 12 N -0.263 5.263 13 C -0.070 4.070 14 C -0.142 4.142 15 C -0.016 4.016 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.071 4.071 25 C -0.136 4.136 26 C -0.141 4.141 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.218 0.782 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.276 4.084 -23.569 28.932 hybrid contribution -0.294 1.149 0.881 1.477 sum -16.569 5.233 -22.688 28.578 Atomic orbital electron populations 1.20802 0.91250 1.02900 1.02273 1.19920 0.96039 0.93150 0.99359 1.21040 0.94326 0.97496 1.01528 1.21162 0.94299 0.98114 0.99567 1.21112 1.00054 0.91907 1.00490 1.19852 0.93662 0.94999 0.99330 1.21359 1.00765 0.94255 0.98152 1.21197 0.84282 0.95282 0.89346 1.86537 1.27734 1.40805 1.81018 1.22321 1.01011 0.97592 0.96799 1.22016 0.95556 0.93718 0.95802 1.62036 1.39971 1.04415 1.19893 1.22254 0.98096 0.99934 0.86697 1.21646 0.97430 0.96277 0.98820 1.19071 0.96031 0.96731 0.89755 1.21216 1.28229 1.05702 1.00440 0.92780 1.25029 0.96725 0.95639 0.97148 1.69958 1.44883 1.27296 1.11507 0.86666 0.81226 0.82047 0.78098 1.20303 1.21332 1.20234 1.21970 0.97201 0.94080 0.93839 1.21571 0.98527 0.95866 0.97655 1.20985 0.93508 0.97664 1.01950 0.91261 0.91418 0.91545 0.86283 0.86022 0.85918 0.90257 0.89892 0.78232 0.90421 0.91277 0.94803 0.90144 0.95465 0.91323 0.92684 0.93571 0.96878 0.96633 0.93017 0.94359 0.91039 0.91194 0.89929 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.08 -0.67 5.88 -104.63 -0.62 -1.29 16 3 C -0.13 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 5 C -0.12 -1.02 7.91 -39.58 -0.31 -1.33 16 6 C -0.08 -0.68 4.03 -104.62 -0.42 -1.10 16 7 C -0.11 -0.91 4.68 -27.88 -0.13 -1.04 16 8 C 0.14 1.45 0.74 -90.50 -0.07 1.38 16 9 O -0.55 -6.34 11.81 -35.23 -0.42 -6.75 16 10 C -0.14 -1.61 4.23 -26.65 -0.11 -1.72 16 11 C 0.06 0.84 5.16 -3.83 -0.02 0.82 16 12 N -0.54 -8.48 4.66 -234.67 -1.09 -9.57 16 13 C 0.06 1.05 4.96 -3.82 -0.02 1.04 16 14 C -0.10 -2.24 5.08 -26.73 -0.14 -2.37 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 16 C -0.52 -15.04 9.11 -34.45 -0.31 -15.35 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.06 0.78 5.33 -3.83 -0.02 0.76 16 25 C -0.10 -1.09 5.11 -26.65 -0.14 -1.22 16 26 C -0.12 -1.01 8.09 -39.58 -0.32 -1.33 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 30 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.98 8.03 -52.48 -0.42 0.56 16 33 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.37 3.55 7.28 45.56 0.33 3.88 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 38 H 0.03 0.53 7.76 -51.93 -0.40 0.12 16 39 H 0.08 1.28 6.21 -51.93 -0.32 0.96 16 40 H 0.03 0.52 8.12 -51.93 -0.42 0.09 16 41 H 0.07 1.25 7.99 -51.93 -0.41 0.84 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 48 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -31.58 394.61 -11.71 -43.29 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -8.58 Total: 0.65 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.28 Total: -23.84 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.36 Total: -36.35 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.42 Total: -6.75 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.58 -11.71 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280584100.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.298 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds