Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38257 * 119.99747 * 2 1 4 4 C 1.38215 * 120.00015 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99910 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99861 * 359.70357 * 5 4 3 7 7 C 1.38211 * 120.00126 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.00158 * 0.02562 * 7 2 1 9 9 H 1.09004 * 109.46993 * 38.53265 * 8 7 2 10 10 C 1.52996 * 109.47408 * 278.53434 * 8 7 2 11 11 N 1.46500 * 109.46928 * 158.53101 * 8 7 2 12 12 C 1.46496 * 119.99801 * 116.45370 * 11 8 7 13 13 C 1.52998 * 109.47375 * 270.92528 * 12 11 8 14 14 C 1.52991 * 109.47395 * 173.08656 * 13 12 11 15 15 C 1.53006 * 109.47129 * 293.09060 * 13 12 11 16 16 C 1.34781 * 119.99992 * 296.44951 * 11 8 7 17 17 O 1.21287 * 119.99826 * 5.75409 * 16 11 8 18 18 C 1.50700 * 119.99991 * 185.74902 * 16 11 8 19 19 C 1.53001 * 109.47223 * 184.09651 * 18 16 11 20 20 C 1.50693 * 109.46999 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00092 * 0.02562 * 20 19 18 22 22 C 1.37883 * 119.99921 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00060 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99721 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47049 * 90.00020 * 24 22 20 26 26 H 1.48497 * 109.46887 * 209.99303 * 24 22 20 27 27 H 1.48491 * 109.47006 * 329.99614 * 24 22 20 28 28 H 1.09005 * 109.47296 * 270.01634 * 1 2 3 29 29 H 1.08993 * 109.47775 * 30.02250 * 1 2 3 30 30 H 1.09004 * 109.46875 * 150.02876 * 1 2 3 31 31 H 1.07996 * 119.99943 * 0.02562 * 3 2 1 32 32 H 1.07996 * 120.00232 * 180.02562 * 4 3 2 33 33 H 1.08001 * 120.00022 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.00059 * 180.29089 * 6 5 4 35 35 H 1.09004 * 109.46906 * 299.99884 * 10 8 7 36 36 H 1.08992 * 109.47066 * 59.99644 * 10 8 7 37 37 H 1.08993 * 109.47112 * 180.02562 * 10 8 7 38 38 H 1.08995 * 109.47674 * 30.93194 * 12 11 8 39 39 H 1.09011 * 109.46860 * 150.93015 * 12 11 8 40 40 H 1.09005 * 109.46528 * 53.08166 * 13 12 11 41 41 H 1.08997 * 109.47071 * 60.00173 * 14 13 12 42 42 H 1.09003 * 109.47097 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.47350 * 300.00171 * 14 13 12 44 44 H 1.09003 * 109.46515 * 301.28546 * 15 13 12 45 45 H 1.08999 * 109.47498 * 61.28723 * 15 13 12 46 46 H 1.09001 * 109.47031 * 181.28920 * 15 13 12 47 47 H 1.08993 * 109.47333 * 304.10144 * 18 16 11 48 48 H 1.09008 * 109.46667 * 64.09854 * 18 16 11 49 49 H 1.09005 * 109.47028 * 300.00593 * 19 18 16 50 50 H 1.08995 * 109.46840 * 60.00361 * 19 18 16 51 51 H 0.96998 * 119.99846 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5670 -2.4149 -0.6400 10 6 1.0037 -2.8365 1.4269 11 7 2.3139 -3.5677 -0.5044 12 6 2.6899 -4.6819 0.3692 13 6 3.9673 -4.3239 1.1314 14 6 4.2647 -5.4100 2.1670 15 6 5.1358 -4.2222 0.1489 16 6 2.7677 -3.5230 -1.7728 17 8 2.5435 -2.5513 -2.4631 18 6 3.5536 -4.6803 -2.3331 19 6 4.0331 -4.3355 -3.7445 20 6 4.8185 -5.4930 -4.3050 21 1 4.9610 -6.3856 -3.7138 22 6 5.3543 -5.4131 -5.5729 23 7 6.0393 -6.4235 -6.0623 24 14 5.1072 -3.8695 -6.5956 25 1 6.2188 -2.9199 -6.3351 26 1 5.0900 -4.2279 -8.0365 27 1 3.8166 -3.2337 -6.2281 28 1 -0.3634 0.0003 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3633 -0.8903 -0.5134 31 1 1.6582 2.1326 0.0004 32 1 4.1203 2.1327 0.0010 33 1 5.3517 0.0001 0.0005 34 1 4.1207 -2.1321 0.0109 35 1 1.8813 -2.9236 2.0675 36 1 0.3570 -2.0436 1.8025 37 1 0.4592 -3.7806 1.4269 38 1 1.8854 -4.8748 1.0789 39 1 2.8642 -5.5734 -0.2335 40 1 3.8329 -3.3672 1.6364 41 1 4.3990 -6.3665 1.6620 42 1 5.1746 -5.1546 2.7103 43 1 3.4323 -5.4824 2.8669 44 1 5.2556 -5.1718 -0.3726 45 1 4.9342 -3.4328 -0.5751 46 1 6.0502 -3.9896 0.6948 47 1 4.4148 -4.8777 -1.6948 48 1 2.9190 -5.5659 -2.3712 49 1 3.1718 -4.1381 -4.3828 50 1 4.6676 -3.4500 -3.7064 51 1 6.4165 -6.3670 -6.9541 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292183637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = -17.494324 kcal Electronic energy + Delta-G solvation = -28548.274553 eV Core-core repulsion = 25026.429316 eV Total energy + Delta-G solvation = -3521.845236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.70694 -38.78653 -36.82634 -34.96617 -33.37456 -32.81513 -31.74096 -30.93987 -29.58260 -27.30535 -27.03542 -26.34054 -25.97591 -23.37453 -22.05516 -21.19128 -20.50433 -20.06164 -18.38393 -17.20994 -16.85940 -16.40833 -15.91369 -15.49449 -15.22834 -14.62502 -14.48487 -14.15974 -13.99817 -13.66139 -13.50667 -13.42188 -13.07961 -12.83009 -12.67508 -12.62407 -12.48824 -12.30857 -12.15367 -12.08806 -11.90628 -11.78789 -11.52614 -11.42146 -11.29575 -10.97642 -10.87853 -10.76793 -10.63634 -10.54323 -10.07421 -9.88592 -9.66731 -9.18678 -9.07817 -8.62231 -8.51503 -8.47466 -8.35410 -6.01153 -3.99211 1.47040 1.54036 3.13689 3.21722 3.39198 3.45851 3.57975 3.87201 4.53084 4.64493 4.77353 4.79791 4.88538 4.88893 4.96692 5.05392 5.08849 5.18034 5.27028 5.32778 5.34808 5.39802 5.44448 5.51936 5.52881 5.61675 5.64394 5.68218 5.73613 5.78194 5.81094 5.88641 5.90521 5.95850 6.05787 6.11909 6.14715 6.17568 6.22892 6.28311 6.45337 6.56603 6.62968 6.67542 6.76530 6.92061 7.15011 7.40440 7.48403 7.69696 7.82912 8.52677 8.71303 9.02232 9.62686 11.11700 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.011946 B = 0.004676 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.372390 B = 5986.237728 C = 7117.472460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.075 4.075 8 C 0.184 3.816 9 H 0.084 0.916 10 C -0.155 4.155 11 N -0.620 5.620 12 C 0.106 3.894 13 C -0.118 4.118 14 C -0.144 4.144 15 C -0.164 4.164 16 C 0.510 3.490 17 O -0.526 6.526 18 C -0.141 4.141 19 C 0.003 3.997 20 C -0.522 4.522 21 H 0.072 0.928 22 C 0.070 3.930 23 N -0.904 5.904 24 Si 0.874 3.126 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.261 1.261 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.022 0.978 50 H 0.016 0.984 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.176 8.948 20.802 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.125 4.125 7 C -0.076 4.076 8 C 0.081 3.919 9 H 0.101 0.899 10 C -0.212 4.212 11 N -0.355 5.355 12 C -0.018 4.018 13 C -0.138 4.138 14 C -0.202 4.202 15 C -0.220 4.220 16 C 0.301 3.699 17 O -0.401 6.401 18 C -0.181 4.181 19 C -0.035 4.035 20 C -0.559 4.559 21 H 0.090 0.910 22 C -0.131 4.131 23 N -0.543 5.543 24 Si 0.701 3.299 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.118 0.882 48 H 0.101 0.899 49 H 0.040 0.960 50 H 0.034 0.966 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.222 9.406 20.238 24.147 hybrid contribution 0.129 0.819 -0.706 1.089 sum -9.093 10.225 19.532 23.848 Atomic orbital electron populations 1.20841 0.91645 1.02932 1.01791 1.19599 0.95693 0.92573 1.00486 1.20894 0.94239 0.97069 1.01935 1.21046 0.94306 0.97813 1.00948 1.21102 0.99690 0.92671 1.00853 1.21396 0.93980 0.98890 0.98213 1.19869 0.94027 0.94048 0.99649 1.19812 0.92161 0.84464 0.95465 0.89859 1.22119 1.02046 1.02133 0.94926 1.48253 1.51007 1.23820 1.12464 1.21791 0.96353 0.89636 0.93978 1.21668 0.95727 0.99722 0.96672 1.21769 1.01364 0.98788 0.98278 1.22287 0.97460 1.03048 0.99237 1.21496 0.78945 0.89372 0.80126 1.90678 1.56677 1.34268 1.58457 1.22159 0.99887 0.95021 1.00986 1.19346 0.96619 0.97082 0.90429 1.21099 1.32737 1.01444 1.00664 0.90980 1.24947 0.94498 0.96063 0.97582 1.69910 1.35973 1.31051 1.17372 0.86841 0.79819 0.83979 0.79217 1.20292 1.21465 1.18530 0.91398 0.91737 0.91323 0.86533 0.86582 0.86524 0.84912 0.91451 0.91185 0.91443 0.90080 0.89494 0.90835 0.92136 0.92499 0.92813 0.90803 0.91797 0.92563 0.88154 0.89887 0.95982 0.96578 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.02 36.00 0.32 -0.84 16 2 C -0.08 -1.08 5.88 -104.63 -0.62 -1.70 16 3 C -0.12 -1.55 9.70 -39.58 -0.38 -1.93 16 4 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 5 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 6 C -0.11 -1.61 8.07 -39.58 -0.32 -1.93 16 7 C -0.07 -1.06 4.09 -104.62 -0.43 -1.49 16 8 C 0.18 2.34 2.35 -69.08 -0.16 2.17 16 9 H 0.08 1.13 6.34 -51.93 -0.33 0.81 16 10 C -0.16 -1.37 7.86 37.16 0.29 -1.08 16 11 N -0.62 -8.65 1.73 -167.43 -0.29 -8.94 16 12 C 0.11 1.14 4.26 -4.04 -0.02 1.12 16 13 C -0.12 -1.21 2.29 -90.62 -0.21 -1.42 16 14 C -0.14 -1.19 9.19 37.15 0.34 -0.85 16 15 C -0.16 -2.06 6.88 37.16 0.26 -1.81 16 16 C 0.51 9.50 5.25 -10.98 -0.06 9.44 16 17 O -0.53 -11.89 14.81 5.55 0.08 -11.80 16 18 C -0.14 -2.79 3.81 -27.88 -0.11 -2.90 16 19 C 0.00 0.08 3.34 -27.89 -0.09 -0.01 16 20 C -0.52 -14.95 9.66 -34.44 -0.33 -15.28 16 21 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 22 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 24 Si 0.87 22.96 27.47 -169.99 -4.67 18.29 16 25 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.26 -6.89 6.54 56.52 0.37 -6.52 16 28 H 0.07 0.54 7.87 -51.93 -0.41 0.14 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.07 0.71 6.09 -51.93 -0.32 0.39 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.98 2.33 -52.49 -0.12 1.86 16 35 H 0.07 0.58 6.38 -51.93 -0.33 0.25 16 36 H 0.07 0.55 7.29 -51.93 -0.38 0.17 16 37 H 0.07 0.51 7.03 -51.93 -0.37 0.14 16 38 H 0.08 0.69 5.76 -51.93 -0.30 0.39 16 39 H 0.09 0.97 6.48 -51.92 -0.34 0.64 16 40 H 0.07 0.77 6.09 -51.93 -0.32 0.45 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.98 6.48 -51.93 -0.34 0.65 16 45 H 0.06 0.97 4.09 -51.93 -0.21 0.75 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 1.82 3.59 -51.93 -0.19 1.63 16 48 H 0.08 1.55 7.81 -51.92 -0.41 1.15 16 49 H 0.02 0.59 7.11 -51.93 -0.37 0.22 16 50 H 0.02 0.42 7.56 -51.93 -0.39 0.03 16 51 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 375.37 15.07 5.66 5.66 Total: -1.00 -34.38 375.37 -8.92 -43.30 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.07 Total: 1.45 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.40 Total: -20.63 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.48 Total: -36.27 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.38 -8.92 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292183637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.808 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds