Wall clock time and date at job start Tue Mar 31 2020 11:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00090 * 2 1 4 4 C 1.38213 * 120.00107 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00159 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00366 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00173 * 179.73063 * 2 1 3 8 8 C 1.50696 * 119.99813 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47387 * 322.76567 * 8 7 2 10 10 C 1.53002 * 109.47049 * 82.76460 * 8 7 2 11 11 N 1.46501 * 109.47028 * 202.76105 * 8 7 2 12 12 C 1.46495 * 120.00281 * 243.75781 * 11 8 7 13 13 C 1.53001 * 109.47263 * 87.75585 * 12 11 8 14 14 C 1.53002 * 109.47118 * 66.79940 * 13 12 11 15 15 C 1.53000 * 109.47557 * 186.80382 * 13 12 11 16 16 C 1.34778 * 119.99689 * 63.76505 * 11 8 7 17 17 O 1.21274 * 120.00347 * 354.71089 * 16 11 8 18 18 C 1.50702 * 119.99779 * 174.71486 * 16 11 8 19 19 C 1.53002 * 109.47027 * 186.14430 * 18 16 11 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.37870 * 119.99812 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00607 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47204 * 60.00233 * 24 22 20 26 26 H 1.48502 * 109.46956 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47134 * 299.99959 * 24 22 20 28 28 H 1.08990 * 109.47165 * 89.99918 * 1 2 3 29 29 H 1.08999 * 109.46939 * 329.99543 * 1 2 3 30 30 H 1.09000 * 109.47182 * 209.99891 * 1 2 3 31 31 H 1.08003 * 119.99891 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99478 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.00572 * 180.02562 * 5 4 3 34 34 H 1.07991 * 120.00692 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47179 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47088 * 299.99914 * 10 8 7 37 37 H 1.09003 * 109.46938 * 59.99832 * 10 8 7 38 38 H 1.08996 * 109.47434 * 207.76060 * 12 11 8 39 39 H 1.09003 * 109.47396 * 327.76144 * 12 11 8 40 40 H 1.09006 * 109.47097 * 306.80169 * 13 12 11 41 41 H 1.09000 * 109.46838 * 66.31932 * 14 13 12 42 42 H 1.08994 * 109.47088 * 186.32307 * 14 13 12 43 43 H 1.09002 * 109.47025 * 306.32726 * 14 13 12 44 44 H 1.08992 * 109.47099 * 59.99421 * 15 13 12 45 45 H 1.08994 * 109.47154 * 180.02562 * 15 13 12 46 46 H 1.09006 * 109.46743 * 300.00003 * 15 13 12 47 47 H 1.08996 * 109.47536 * 306.14968 * 18 16 11 48 48 H 1.09005 * 109.47290 * 66.14781 * 18 16 11 49 49 H 1.08995 * 109.46968 * 300.00312 * 19 18 16 50 50 H 1.08996 * 109.46661 * 60.00649 * 19 18 16 51 51 H 0.96995 * 120.00575 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0056 8 6 1.4446 -2.5020 0.0123 9 1 0.5546 -2.4045 0.6340 10 6 1.0317 -2.8599 -1.4168 11 7 2.3037 -3.5591 0.5516 12 6 2.7003 -4.6851 -0.2974 13 6 3.9760 -4.3236 -1.0610 14 6 5.1375 -4.1819 -0.0753 15 6 4.2960 -5.4274 -2.0710 16 6 2.7290 -3.4957 1.8290 17 8 2.4812 -2.5183 2.5028 18 6 3.5126 -4.6393 2.4198 19 6 3.7384 -4.3859 3.9117 20 6 4.5215 -5.5298 4.5027 21 1 4.8279 -6.3549 3.8767 22 6 4.8467 -5.5231 5.8425 23 7 4.4732 -4.5187 6.6049 24 14 5.8180 -6.9407 6.5749 25 1 7.1300 -7.0491 5.8879 26 1 6.0370 -6.6948 8.0230 27 1 5.0597 -8.2050 6.3962 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.6583 2.1327 0.0004 32 1 4.1203 2.1327 0.0010 33 1 5.3517 0.0000 0.0014 34 1 4.1207 -2.1322 0.0010 35 1 0.4871 -3.8041 -1.4120 36 1 0.3926 -2.0734 -1.8180 37 1 1.9218 -2.9573 -2.0385 38 1 2.8848 -5.5614 0.3239 39 1 1.9022 -4.9042 -1.0067 40 1 3.8293 -3.3806 -1.5877 41 1 5.3572 -5.1525 0.3693 42 1 6.0186 -3.8157 -0.6022 43 1 4.8641 -3.4764 0.7094 44 1 3.4685 -5.5283 -2.7732 45 1 5.2050 -5.1700 -2.6146 46 1 4.4427 -6.3704 -1.5443 47 1 2.9559 -5.5672 2.2890 48 1 4.4755 -4.7191 1.9151 49 1 4.2951 -3.4580 4.0424 50 1 2.7756 -4.3062 4.4164 51 1 4.7023 -4.5138 7.5474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292183640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:48 Heat of formation + Delta-G solvation = -21.947241 kcal Electronic energy + Delta-G solvation = -28420.084833 eV Core-core repulsion = 24898.046504 eV Total energy + Delta-G solvation = -3522.038329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61606 -38.69739 -36.74198 -34.86965 -33.35849 -32.74393 -31.66556 -30.65653 -29.46691 -27.23596 -26.96410 -26.27503 -25.65931 -23.35156 -22.18559 -21.22722 -20.48949 -20.06510 -18.30014 -16.95361 -16.78110 -16.22852 -15.67146 -15.41635 -15.16055 -14.58994 -14.51019 -14.32268 -14.02913 -13.54827 -13.44365 -13.31229 -13.00189 -12.75245 -12.61124 -12.45867 -12.26188 -12.17803 -12.06044 -12.02999 -11.85175 -11.71573 -11.47024 -11.29207 -11.10042 -10.92203 -10.86147 -10.76503 -10.63305 -10.59526 -10.44127 -9.78555 -9.51700 -9.13695 -8.94588 -8.55763 -8.42550 -8.31158 -8.25090 -5.92934 -3.97354 1.53474 1.60313 3.25682 3.32034 3.35522 3.40497 3.42143 3.93604 4.48985 4.70455 4.80318 4.85657 4.92407 4.95419 5.03084 5.10591 5.14202 5.23999 5.32752 5.38158 5.41786 5.45094 5.52927 5.56343 5.59295 5.64916 5.67521 5.72752 5.80493 5.82625 5.87666 5.91025 5.93900 6.01442 6.08730 6.20853 6.22819 6.26299 6.28632 6.34841 6.48427 6.63067 6.70457 6.73137 6.91677 7.02796 7.21357 7.77107 7.82664 7.90823 8.11142 8.42345 8.84483 9.11302 9.65960 11.17957 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.004086 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.449624 B = 6850.323826 C = 7760.759607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.075 4.075 8 C 0.184 3.816 9 H 0.084 0.916 10 C -0.155 4.155 11 N -0.622 5.622 12 C 0.106 3.894 13 C -0.118 4.118 14 C -0.163 4.163 15 C -0.144 4.144 16 C 0.510 3.490 17 O -0.520 6.520 18 C -0.143 4.143 19 C 0.039 3.961 20 C -0.525 4.525 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.023 0.977 50 H 0.019 0.981 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 4.733 -21.599 22.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.125 4.125 7 C -0.076 4.076 8 C 0.081 3.919 9 H 0.101 0.899 10 C -0.212 4.212 11 N -0.357 5.357 12 C -0.017 4.017 13 C -0.138 4.138 14 C -0.220 4.220 15 C -0.202 4.202 16 C 0.300 3.700 17 O -0.394 6.394 18 C -0.182 4.182 19 C 0.001 3.999 20 C -0.564 4.564 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.042 0.958 50 H 0.038 0.962 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.431 5.330 -21.005 22.341 hybrid contribution 0.681 -0.673 0.556 1.107 sum -4.751 4.657 -20.449 21.504 Atomic orbital electron populations 1.20839 0.91656 1.03001 1.01727 1.19603 0.95703 0.92579 1.00391 1.20892 0.94238 0.97067 1.01911 1.21037 0.94311 0.97798 1.00983 1.21089 0.99635 0.92689 1.00935 1.21386 0.93979 0.98869 0.98287 1.19883 0.94039 0.94091 0.99556 1.19805 0.92465 0.84645 0.95018 0.89854 1.22121 1.02100 1.02022 0.94953 1.48300 1.51805 1.23554 1.12079 1.21758 0.96037 0.89507 0.94417 1.21675 0.95816 0.99565 0.96720 1.22252 0.97479 1.02889 0.99375 1.21772 1.01285 0.98604 0.98505 1.21513 0.79129 0.89358 0.80003 1.90691 1.55553 1.33463 1.59668 1.22251 0.99401 0.94709 1.01855 1.18875 0.97502 0.97142 0.86352 1.21169 1.35227 1.05825 0.94156 0.92756 1.25008 0.96081 0.95883 0.97285 1.69987 1.46107 1.30656 1.06070 0.86690 0.80550 0.82779 0.78128 1.20266 1.21307 1.20271 0.91459 0.91717 0.91270 0.86541 0.86599 0.86573 0.84932 0.91503 0.91247 0.91498 0.89507 0.90277 0.90803 0.91378 0.92760 0.91408 0.92808 0.92570 0.92244 0.90726 0.88961 0.95820 0.96236 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.13 36.00 0.33 -0.91 16 2 C -0.08 -1.12 5.88 -104.62 -0.62 -1.74 16 3 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 4 C -0.12 -1.64 10.05 -39.59 -0.40 -2.04 16 5 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 6 C -0.11 -1.66 8.13 -39.58 -0.32 -1.98 16 7 C -0.07 -1.10 4.06 -104.62 -0.43 -1.53 16 8 C 0.18 2.46 2.35 -69.08 -0.16 2.30 16 9 H 0.08 1.21 6.27 -51.93 -0.33 0.88 16 10 C -0.15 -1.45 7.88 37.16 0.29 -1.16 16 11 N -0.62 -9.12 1.72 -167.43 -0.29 -9.41 16 12 C 0.11 1.20 4.27 -4.04 -0.02 1.18 16 13 C -0.12 -1.23 2.27 -90.62 -0.21 -1.43 16 14 C -0.16 -2.05 6.71 37.16 0.25 -1.80 16 15 C -0.14 -1.19 9.19 37.16 0.34 -0.85 16 16 C 0.51 10.01 5.26 -10.98 -0.06 9.95 16 17 O -0.52 -12.49 14.89 5.56 0.08 -12.40 16 18 C -0.14 -2.95 3.97 -27.88 -0.11 -3.06 16 19 C 0.04 1.06 4.29 -27.88 -0.12 0.94 16 20 C -0.53 -14.96 9.11 -34.44 -0.31 -15.27 16 21 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -27.69 13.29 55.43 0.74 -26.95 16 24 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H 0.07 0.58 7.97 -51.93 -0.41 0.16 16 29 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.07 0.77 6.06 -51.93 -0.31 0.46 16 31 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 32 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 34 H 0.13 2.02 2.35 -52.49 -0.12 1.89 16 35 H 0.07 0.54 7.03 -51.93 -0.37 0.18 16 36 H 0.07 0.58 7.50 -51.93 -0.39 0.19 16 37 H 0.07 0.61 6.25 -51.93 -0.32 0.28 16 38 H 0.09 1.02 6.20 -51.93 -0.32 0.69 16 39 H 0.08 0.71 5.82 -51.93 -0.30 0.41 16 40 H 0.07 0.79 5.93 -51.93 -0.31 0.48 16 41 H 0.07 0.86 7.20 -51.93 -0.37 0.49 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.05 3.68 -51.93 -0.19 0.85 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 1.42 7.28 -51.93 -0.38 1.05 16 48 H 0.09 1.75 4.26 -51.93 -0.22 1.53 16 49 H 0.02 0.71 8.03 -51.93 -0.42 0.29 16 50 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -34.44 379.37 -9.30 -43.74 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.11 Total: 2.54 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.41 Total: -19.98 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.45 Total: -36.36 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.44 -9.30 -43.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292183640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.795 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds