Wall clock time and date at job start Tue Mar 31 2020 11:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00090 * 2 1 4 4 C 1.38213 * 120.00107 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00159 * 0.02562 * 4 3 2 6 6 C 1.38215 * 120.00366 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00173 * 179.73063 * 2 1 3 8 8 C 1.50696 * 119.99813 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47387 * 322.76567 * 8 7 2 10 10 C 1.53002 * 109.47049 * 82.76460 * 8 7 2 11 11 N 1.46501 * 109.47028 * 202.76105 * 8 7 2 12 12 C 1.46495 * 120.00281 * 243.75781 * 11 8 7 13 13 C 1.53001 * 109.47263 * 87.75585 * 12 11 8 14 14 C 1.53002 * 109.47118 * 66.79940 * 13 12 11 15 15 C 1.53000 * 109.47557 * 186.80382 * 13 12 11 16 16 C 1.34778 * 119.99689 * 63.76505 * 11 8 7 17 17 O 1.21274 * 120.00347 * 354.71089 * 16 11 8 18 18 C 1.50702 * 119.99779 * 174.71486 * 16 11 8 19 19 C 1.53002 * 109.47027 * 186.14430 * 18 16 11 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00158 * 0.02562 * 20 19 18 22 22 C 1.37870 * 119.99812 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00607 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99883 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47204 * 60.00233 * 24 22 20 26 26 H 1.48502 * 109.46956 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47134 * 299.99959 * 24 22 20 28 28 H 1.08990 * 109.47165 * 89.99918 * 1 2 3 29 29 H 1.08999 * 109.46939 * 329.99543 * 1 2 3 30 30 H 1.09000 * 109.47182 * 209.99891 * 1 2 3 31 31 H 1.08003 * 119.99891 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99478 * 180.02562 * 4 3 2 33 33 H 1.08004 * 120.00572 * 180.02562 * 5 4 3 34 34 H 1.07991 * 120.00692 * 180.02562 * 6 5 4 35 35 H 1.09005 * 109.47179 * 179.97438 * 10 8 7 36 36 H 1.08994 * 109.47088 * 299.99914 * 10 8 7 37 37 H 1.09003 * 109.46938 * 59.99832 * 10 8 7 38 38 H 1.08996 * 109.47434 * 207.76060 * 12 11 8 39 39 H 1.09003 * 109.47396 * 327.76144 * 12 11 8 40 40 H 1.09006 * 109.47097 * 306.80169 * 13 12 11 41 41 H 1.09000 * 109.46838 * 66.31932 * 14 13 12 42 42 H 1.08994 * 109.47088 * 186.32307 * 14 13 12 43 43 H 1.09002 * 109.47025 * 306.32726 * 14 13 12 44 44 H 1.08992 * 109.47099 * 59.99421 * 15 13 12 45 45 H 1.08994 * 109.47154 * 180.02562 * 15 13 12 46 46 H 1.09006 * 109.46743 * 300.00003 * 15 13 12 47 47 H 1.08996 * 109.47536 * 306.14968 * 18 16 11 48 48 H 1.09005 * 109.47290 * 66.14781 * 18 16 11 49 49 H 1.08995 * 109.46968 * 300.00312 * 19 18 16 50 50 H 1.08996 * 109.46661 * 60.00649 * 19 18 16 51 51 H 0.96995 * 120.00575 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0056 8 6 1.4446 -2.5020 0.0123 9 1 0.5546 -2.4045 0.6340 10 6 1.0317 -2.8599 -1.4168 11 7 2.3037 -3.5591 0.5516 12 6 2.7003 -4.6851 -0.2974 13 6 3.9760 -4.3236 -1.0610 14 6 5.1375 -4.1819 -0.0753 15 6 4.2960 -5.4274 -2.0710 16 6 2.7290 -3.4957 1.8290 17 8 2.4812 -2.5183 2.5028 18 6 3.5126 -4.6393 2.4198 19 6 3.7384 -4.3859 3.9117 20 6 4.5215 -5.5298 4.5027 21 1 4.8279 -6.3549 3.8767 22 6 4.8467 -5.5231 5.8425 23 7 4.4732 -4.5187 6.6049 24 14 5.8180 -6.9407 6.5749 25 1 7.1300 -7.0491 5.8879 26 1 6.0370 -6.6948 8.0230 27 1 5.0597 -8.2050 6.3962 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 0.8899 0.5139 30 1 -0.3633 -0.8900 0.5138 31 1 1.6583 2.1327 0.0004 32 1 4.1203 2.1327 0.0010 33 1 5.3517 0.0000 0.0014 34 1 4.1207 -2.1322 0.0010 35 1 0.4871 -3.8041 -1.4120 36 1 0.3926 -2.0734 -1.8180 37 1 1.9218 -2.9573 -2.0385 38 1 2.8848 -5.5614 0.3239 39 1 1.9022 -4.9042 -1.0067 40 1 3.8293 -3.3806 -1.5877 41 1 5.3572 -5.1525 0.3693 42 1 6.0186 -3.8157 -0.6022 43 1 4.8641 -3.4764 0.7094 44 1 3.4685 -5.5283 -2.7732 45 1 5.2050 -5.1700 -2.6146 46 1 4.4427 -6.3704 -1.5443 47 1 2.9559 -5.5672 2.2890 48 1 4.4755 -4.7191 1.9151 49 1 4.2951 -3.4580 4.0424 50 1 2.7756 -4.3062 4.4164 51 1 4.7023 -4.5138 7.5474 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292183640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:47 Heat of formation + Delta-G solvation = -40.650035 kcal Electronic energy + Delta-G solvation = -28420.895847 eV Core-core repulsion = 24898.046504 eV Total energy + Delta-G solvation = -3522.849343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83389 -39.89784 -38.00725 -36.02590 -35.34524 -33.77678 -33.19926 -32.21272 -30.51385 -28.26938 -27.91162 -27.51763 -27.21037 -24.57960 -23.74902 -22.41653 -21.69899 -21.14517 -19.59022 -18.81696 -17.87953 -17.70016 -17.13667 -16.61071 -16.46370 -16.36099 -15.57131 -15.44477 -15.14647 -14.73044 -14.70951 -14.37075 -14.26207 -14.04931 -13.94465 -13.60589 -13.53568 -13.34011 -13.15736 -13.00416 -12.93597 -12.75812 -12.74511 -12.64907 -12.48085 -12.36754 -12.34035 -11.87582 -11.77150 -11.73924 -11.61310 -11.55089 -11.33980 -11.23531 -10.59854 -10.55409 -9.67361 -9.56648 -9.39010 -8.18002 -6.32588 0.47699 0.53194 1.40542 1.45396 1.53041 1.75237 2.06511 2.42619 2.87493 3.14674 3.72964 3.79400 3.90100 3.97842 4.02913 4.06317 4.16734 4.22893 4.23445 4.28960 4.44616 4.46215 4.49668 4.54812 4.60627 4.67987 4.72082 4.78887 4.82756 4.87183 4.90703 4.95115 4.96967 5.04621 5.12070 5.13069 5.16309 5.23145 5.28708 5.32997 5.43150 5.48068 5.54585 5.56783 5.61702 5.64658 5.66221 5.83654 5.88936 6.17129 6.18261 6.47248 6.85467 7.35111 7.38445 8.94580 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013121 B = 0.004086 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.449624 B = 6850.323826 C = 7760.759607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.131 4.131 5 C -0.147 4.147 6 C -0.132 4.132 7 C -0.091 4.091 8 C 0.180 3.820 9 H 0.070 0.930 10 C -0.146 4.146 11 N -0.605 5.605 12 C 0.096 3.904 13 C -0.108 4.108 14 C -0.165 4.165 15 C -0.138 4.138 16 C 0.512 3.488 17 O -0.577 6.577 18 C -0.131 4.131 19 C 0.049 3.951 20 C -0.541 4.541 21 H 0.075 0.925 22 C -0.005 4.005 23 N -0.938 5.938 24 Si 0.972 3.028 25 H -0.262 1.262 26 H -0.288 1.288 27 H -0.261 1.261 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.111 0.889 49 H -0.023 1.023 50 H -0.024 1.024 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 3.002 -24.383 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.148 4.148 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.092 4.092 8 C 0.077 3.923 9 H 0.087 0.913 10 C -0.203 4.203 11 N -0.338 5.338 12 C -0.026 4.026 13 C -0.128 4.128 14 C -0.222 4.222 15 C -0.196 4.196 16 C 0.302 3.698 17 O -0.456 6.456 18 C -0.170 4.170 19 C 0.011 3.989 20 C -0.579 4.579 21 H 0.093 0.907 22 C -0.202 4.202 23 N -0.578 5.578 24 Si 0.796 3.204 25 H -0.187 1.187 26 H -0.213 1.213 27 H -0.185 1.185 28 H 0.112 0.888 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.141 0.859 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.129 0.871 49 H -0.005 1.005 50 H -0.005 1.005 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.706 3.564 -23.869 24.799 hybrid contribution 0.753 -0.059 1.400 1.590 sum -4.953 3.505 -22.470 23.274 Atomic orbital electron populations 1.20876 0.89646 1.02975 1.03396 1.20029 0.97392 0.92455 0.99759 1.21272 0.94396 0.98041 1.01190 1.21363 0.94855 0.98280 1.00349 1.21339 1.00315 0.93186 1.01687 1.21548 0.94706 0.99192 0.99486 1.20111 0.94007 0.95194 0.99914 1.20016 0.91282 0.83836 0.97174 0.91261 1.22113 1.02829 1.03538 0.91825 1.48183 1.50446 1.24600 1.10569 1.22134 0.97808 0.88011 0.94627 1.21586 0.94133 1.00619 0.96448 1.22238 0.99026 1.01733 0.99165 1.21733 1.02346 0.97440 0.98073 1.21200 0.78900 0.88147 0.81530 1.90663 1.57988 1.35221 1.61694 1.22025 1.01198 0.96205 0.97576 1.18624 0.94424 0.95135 0.90720 1.21644 1.35037 1.06370 0.94859 0.90692 1.26127 0.97184 0.99019 0.97912 1.70180 1.47773 1.33402 1.06474 0.85399 0.79223 0.78919 0.76873 1.18666 1.21336 1.18505 0.88781 0.90941 0.92093 0.84060 0.84367 0.85888 0.85290 0.89525 0.89709 0.90793 0.89619 0.86750 0.90828 0.91566 0.91796 0.94780 0.90779 0.92128 0.92057 0.88625 0.87140 1.00460 1.00528 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.13 71.23 0.65 -1.62 16 2 C -0.10 -2.58 5.88 -19.87 -0.12 -2.70 16 3 C -0.13 -3.34 9.70 22.27 0.22 -3.13 16 4 C -0.13 -3.47 10.05 22.27 0.22 -3.24 16 5 C -0.15 -4.41 10.05 22.27 0.22 -4.19 16 6 C -0.13 -4.20 8.13 22.27 0.18 -4.02 16 7 C -0.09 -2.71 4.06 -19.86 -0.08 -2.80 16 8 C 0.18 4.70 2.35 44.24 0.10 4.80 16 9 H 0.07 2.02 6.27 -2.39 -0.01 2.01 16 10 C -0.15 -2.32 7.88 71.98 0.57 -1.75 16 11 N -0.61 -17.59 1.72 -802.02 -1.38 -18.97 16 12 C 0.10 1.95 4.27 86.38 0.37 2.32 16 13 C -0.11 -2.03 2.27 -10.79 -0.02 -2.06 16 14 C -0.16 -4.06 6.71 71.98 0.48 -3.58 16 15 C -0.14 -1.83 9.19 71.98 0.66 -1.16 16 16 C 0.51 20.99 5.26 87.66 0.46 21.45 16 17 O -0.58 -29.70 14.89 -3.01 -0.04 -29.75 16 18 C -0.13 -5.57 3.97 29.85 0.12 -5.46 16 19 C 0.05 2.81 4.29 29.85 0.13 2.94 16 20 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 21 H 0.07 3.95 7.74 -2.91 -0.02 3.93 16 22 C 0.00 -0.30 5.46 84.65 0.46 0.17 16 23 N -0.94 -60.82 13.29 21.44 0.28 -60.53 16 24 Si 0.97 44.87 29.54 68.60 2.03 46.89 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 28 H 0.09 1.37 7.97 -2.39 -0.02 1.35 16 29 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 30 H 0.06 1.33 6.06 -2.39 -0.01 1.32 16 31 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.13 4.08 2.35 -2.92 -0.01 4.07 16 35 H 0.09 1.05 7.03 -2.38 -0.02 1.03 16 36 H 0.08 1.13 7.50 -2.39 -0.02 1.11 16 37 H 0.07 1.10 6.25 -2.39 -0.01 1.08 16 38 H 0.09 1.81 6.20 -2.39 -0.01 1.79 16 39 H 0.11 1.59 5.82 -2.39 -0.01 1.57 16 40 H 0.07 1.43 5.93 -2.38 -0.01 1.42 16 41 H 0.07 1.62 7.20 -2.39 -0.02 1.60 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.03 1.08 3.68 -2.39 -0.01 1.07 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.10 3.63 7.28 -2.39 -0.02 3.61 16 48 H 0.11 4.28 4.26 -2.38 -0.01 4.27 16 49 H -0.02 -1.53 8.03 -2.39 -0.02 -1.55 16 50 H -0.02 -1.55 8.14 -2.39 -0.02 -1.57 16 51 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -80.89 379.37 6.67 -74.22 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.92 Total: 23.39 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 4.86 Total: -35.27 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.09 Total: -79.50 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -0.04 Total: -29.75 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -80.89 6.67 -74.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292183640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.574 kcal (2) G-P(sol) polarization free energy of solvation -80.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds