Wall clock time and date at job start Tue Mar 31 2020 11:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47639 * 2 1 4 4 C 1.53004 * 109.47294 * 120.00518 * 2 1 3 5 5 C 1.52996 * 109.47339 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47173 * 299.99944 * 5 4 2 7 7 C 1.53005 * 109.47032 * 179.97438 * 6 5 4 8 8 N 1.46908 * 109.46894 * 174.99988 * 7 6 5 9 9 C 1.46903 * 110.99867 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47107 * 179.97438 * 9 8 7 11 11 C 1.38328 * 119.96224 * 270.02211 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99605 * 10 9 8 25 25 C 1.53002 * 109.47298 * 59.99730 * 6 5 4 26 26 C 1.52996 * 109.47229 * 300.00236 * 25 6 5 27 27 H 1.09008 * 109.46896 * 300.00071 * 1 2 3 28 28 H 1.09001 * 109.47020 * 59.99655 * 1 2 3 29 29 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47723 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47196 * 300.00237 * 3 2 1 32 32 H 1.09008 * 109.47034 * 60.00014 * 3 2 1 33 33 H 1.08994 * 109.47370 * 59.99516 * 4 2 1 34 34 H 1.09008 * 109.46668 * 299.99550 * 4 2 1 35 35 H 1.08994 * 109.47595 * 179.97438 * 5 4 2 36 36 H 1.09007 * 109.47068 * 60.00006 * 5 4 2 37 37 H 1.09001 * 109.47250 * 299.99540 * 6 5 4 38 38 H 1.08994 * 109.47169 * 55.00347 * 7 6 5 39 39 H 1.08997 * 109.47335 * 294.99374 * 7 6 5 40 40 H 1.00900 * 110.99921 * 303.95393 * 8 7 6 41 41 H 1.09004 * 109.46952 * 59.99542 * 9 8 7 42 42 H 1.08998 * 109.46757 * 300.00157 * 9 8 7 43 43 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 44 44 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 45 45 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 46 46 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 48 48 H 1.09000 * 109.46789 * 60.00432 * 25 6 5 49 49 H 1.09007 * 109.46801 * 179.97438 * 25 6 5 50 50 H 1.09001 * 109.46657 * 299.99784 * 26 25 6 51 51 H 1.09001 * 109.47065 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5699 -0.7219 1.2489 6 6 4.0794 -1.4434 -0.0004 7 6 5.6095 -1.4434 -0.0010 8 7 6.0987 -2.2381 -1.1356 9 6 7.5672 -2.2611 -1.1679 10 6 8.0309 -3.0842 -2.3420 11 6 8.2429 -4.4429 -2.1924 12 6 8.6679 -5.2017 -3.2675 13 6 8.8758 -4.6057 -4.4960 14 6 8.6694 -3.2411 -4.6479 15 8 8.8788 -2.6514 -5.8526 16 6 9.4014 -3.4212 -6.8284 17 1 9.5578 -4.4762 -6.6584 18 6 9.7379 -2.8583 -8.0501 19 7 9.5479 -1.5732 -8.2569 20 14 10.4627 -3.9248 -9.4017 21 1 10.5753 -5.3252 -8.9205 22 1 9.5786 -3.8812 -10.5941 23 1 11.8096 -3.4160 -9.7652 24 6 8.2433 -2.4814 -3.5659 25 6 3.5694 -0.7221 -1.2496 26 6 2.0394 -0.7216 -1.2493 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7490 1.2492 34 1 1.6767 -0.2075 2.1392 35 1 3.9333 -1.2354 2.1390 36 1 3.9337 0.3057 1.2487 37 1 3.7158 -2.4710 -0.0002 38 1 5.9732 -1.8775 0.9303 39 1 5.9728 -0.4197 -0.0910 40 1 5.7232 -3.1743 -1.1099 41 1 7.9441 -2.7011 -0.2446 42 1 7.9443 -1.2431 -1.2657 43 1 8.0760 -4.9121 -1.2341 44 1 8.8329 -6.2622 -3.1475 45 1 9.2029 -5.1998 -5.3367 46 1 9.7837 -1.1794 -9.1114 47 1 8.0780 -1.4205 -3.6819 48 1 3.9332 0.3054 -1.2498 49 1 3.9328 -1.2360 -2.1396 50 1 1.6758 -1.7491 -1.2491 51 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314470781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:51 Heat of formation + Delta-G solvation = -38.146618 kcal Electronic energy + Delta-G solvation = -26114.151422 eV Core-core repulsion = 22591.410634 eV Total energy + Delta-G solvation = -3522.740787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.86383 -39.03036 -37.08400 -35.81058 -33.36477 -32.23844 -30.92845 -30.48801 -29.02847 -27.54828 -27.47925 -25.46539 -24.57430 -23.05458 -22.57741 -21.60689 -20.75469 -20.37014 -18.57923 -17.63588 -16.91926 -15.83161 -15.34041 -14.99219 -14.97889 -14.87975 -14.60841 -14.41642 -14.30073 -14.11636 -13.51866 -13.48412 -13.10518 -13.04225 -12.95000 -12.42233 -12.40719 -12.06292 -12.01348 -11.91668 -11.87142 -11.58163 -11.42917 -11.35822 -11.22739 -11.08195 -10.90062 -10.79533 -10.69395 -10.53497 -10.40552 -10.24709 -10.09986 -9.98977 -9.29571 -8.82050 -8.31281 -8.01948 -7.19927 -6.41471 -4.00399 2.15651 2.40386 3.14133 3.15554 3.21100 3.99104 4.20999 4.44167 4.52212 4.58191 4.72323 4.85308 5.01800 5.07395 5.11959 5.18827 5.22147 5.27323 5.34628 5.41249 5.42287 5.46601 5.50306 5.58317 5.62347 5.63584 5.68626 5.75442 5.77219 5.78290 5.85597 5.88113 5.91210 5.95436 5.96919 6.06562 6.09161 6.19196 6.21619 6.28150 6.40555 6.43269 6.52491 6.70050 6.96073 7.10040 7.12911 7.33446 7.38313 7.47547 7.53358 7.86065 8.03758 9.04358 9.75628 10.76804 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.002312 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.643230 B =12109.255141 C =13126.926182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.082 4.082 7 C 0.063 3.937 8 N -0.679 5.679 9 C 0.107 3.893 10 C -0.047 4.047 11 C -0.208 4.208 12 C -0.076 4.076 13 C -0.233 4.233 14 C 0.152 3.848 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.166 4.166 25 C -0.109 4.109 26 C -0.109 4.109 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.341 0.659 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.125 0.875 46 H 0.269 0.731 47 H 0.117 0.883 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.059 0.941 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.256 1.191 18.483 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.142 4.142 5 C -0.154 4.154 6 C -0.100 4.100 7 C -0.067 4.067 8 N -0.310 5.310 9 C -0.021 4.021 10 C -0.048 4.048 11 C -0.227 4.227 12 C -0.095 4.095 13 C -0.252 4.252 14 C 0.098 3.902 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.186 4.186 25 C -0.146 4.146 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.159 0.841 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.143 0.857 46 H 0.079 0.921 47 H 0.135 0.865 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.306 2.125 17.761 22.294 hybrid contribution 0.582 -1.263 0.031 1.391 sum -12.724 0.862 17.793 21.891 Atomic orbital electron populations 1.21873 0.95029 1.01528 1.01470 1.20547 0.94829 0.95635 0.95602 1.21968 1.01724 0.95238 1.01224 1.21552 0.95458 1.00220 0.97020 1.21599 0.95509 1.00927 0.97332 1.21132 0.94072 0.99670 0.95175 1.22027 0.94642 0.98699 0.91304 1.60461 1.07561 1.19006 1.43994 1.20784 0.87346 0.99475 0.94542 1.19157 0.98622 0.93350 0.93647 1.20417 1.10334 0.93597 0.98354 1.20683 0.97743 0.98320 0.92710 1.21176 1.10466 0.95148 0.98431 1.19366 0.92795 0.91190 0.86811 1.83983 1.70490 1.38257 1.15516 1.21361 1.41393 0.92591 0.91345 0.89100 1.25277 0.97104 0.96372 0.97812 1.70048 1.44705 1.10612 1.24464 0.85661 0.78639 0.79244 0.79952 1.19146 1.20168 1.20177 1.20021 1.08154 0.99544 0.90834 1.21531 0.94124 1.00735 0.98240 1.21623 0.96367 1.00024 0.96675 0.92980 0.92749 0.92845 0.91808 0.92880 0.93192 0.92190 0.92340 0.92422 0.91610 0.91550 0.95771 0.91143 0.84122 0.95047 0.90593 0.88143 0.87630 0.85697 0.92125 0.86540 0.92019 0.90391 0.92271 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.47 37.15 0.31 -0.73 16 2 C -0.07 -0.53 0.77 -154.51 -0.12 -0.65 16 3 C -0.14 -1.16 7.78 37.15 0.29 -0.87 16 4 C -0.10 -0.81 4.73 -26.73 -0.13 -0.94 16 5 C -0.12 -0.94 4.93 -26.74 -0.13 -1.07 16 6 C -0.08 -0.77 2.33 -90.62 -0.21 -0.98 16 7 C 0.06 0.66 5.07 -3.82 -0.02 0.64 16 8 N -0.68 -8.80 5.94 -115.05 -0.68 -9.49 16 9 C 0.11 1.53 5.81 -4.97 -0.03 1.50 16 10 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 11 C -0.21 -3.60 9.70 -39.53 -0.38 -3.98 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 13 C -0.23 -5.15 9.17 -39.40 -0.36 -5.51 16 14 C 0.15 3.74 6.65 -39.11 -0.26 3.48 16 15 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 16 C -0.39 -11.06 9.49 30.89 0.29 -10.76 16 17 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.60 13.67 55.48 0.76 -24.85 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C -0.17 -3.58 9.65 -39.39 -0.38 -3.96 16 25 C -0.11 -1.14 4.82 -26.73 -0.13 -1.27 16 26 C -0.11 -1.02 4.73 -26.73 -0.13 -1.14 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.54 6.43 -51.93 -0.33 0.20 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.34 4.31 8.72 -39.29 -0.34 3.96 16 41 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 43 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.13 2.77 5.64 -52.48 -0.30 2.48 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 48 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 49 H 0.08 0.99 7.75 -51.92 -0.40 0.58 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -29.82 394.75 -10.41 -40.22 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -8.97 Total: 6.12 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -2.44 Total: -28.50 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.07 Total: -34.33 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: 0.00 Total: -5.18 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.82 -10.41 -40.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314470781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.078 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds