Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47639 * 2 1 4 4 C 1.53004 * 109.47294 * 120.00518 * 2 1 3 5 5 C 1.52996 * 109.47339 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47173 * 299.99944 * 5 4 2 7 7 C 1.53005 * 109.47032 * 179.97438 * 6 5 4 8 8 N 1.46908 * 109.46894 * 174.99988 * 7 6 5 9 9 C 1.46903 * 110.99867 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47107 * 179.97438 * 9 8 7 11 11 C 1.38328 * 119.96224 * 270.02211 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99605 * 10 9 8 25 25 C 1.53002 * 109.47298 * 59.99730 * 6 5 4 26 26 C 1.52996 * 109.47229 * 300.00236 * 25 6 5 27 27 H 1.09008 * 109.46896 * 300.00071 * 1 2 3 28 28 H 1.09001 * 109.47020 * 59.99655 * 1 2 3 29 29 H 1.09000 * 109.47719 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47723 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47196 * 300.00237 * 3 2 1 32 32 H 1.09008 * 109.47034 * 60.00014 * 3 2 1 33 33 H 1.08994 * 109.47370 * 59.99516 * 4 2 1 34 34 H 1.09008 * 109.46668 * 299.99550 * 4 2 1 35 35 H 1.08994 * 109.47595 * 179.97438 * 5 4 2 36 36 H 1.09007 * 109.47068 * 60.00006 * 5 4 2 37 37 H 1.09001 * 109.47250 * 299.99540 * 6 5 4 38 38 H 1.08994 * 109.47169 * 55.00347 * 7 6 5 39 39 H 1.08997 * 109.47335 * 294.99374 * 7 6 5 40 40 H 1.00900 * 110.99921 * 303.95393 * 8 7 6 41 41 H 1.09004 * 109.46952 * 59.99542 * 9 8 7 42 42 H 1.08998 * 109.46757 * 300.00157 * 9 8 7 43 43 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 44 44 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 45 45 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 46 46 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 48 48 H 1.09000 * 109.46789 * 60.00432 * 25 6 5 49 49 H 1.09007 * 109.46801 * 179.97438 * 25 6 5 50 50 H 1.09001 * 109.46657 * 299.99784 * 26 25 6 51 51 H 1.09001 * 109.47065 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5699 -0.7219 1.2489 6 6 4.0794 -1.4434 -0.0004 7 6 5.6095 -1.4434 -0.0010 8 7 6.0987 -2.2381 -1.1356 9 6 7.5672 -2.2611 -1.1679 10 6 8.0309 -3.0842 -2.3420 11 6 8.2429 -4.4429 -2.1924 12 6 8.6679 -5.2017 -3.2675 13 6 8.8758 -4.6057 -4.4960 14 6 8.6694 -3.2411 -4.6479 15 8 8.8788 -2.6514 -5.8526 16 6 9.4014 -3.4212 -6.8284 17 1 9.5578 -4.4762 -6.6584 18 6 9.7379 -2.8583 -8.0501 19 7 9.5479 -1.5732 -8.2569 20 14 10.4627 -3.9248 -9.4017 21 1 10.5753 -5.3252 -8.9205 22 1 9.5786 -3.8812 -10.5941 23 1 11.8096 -3.4160 -9.7652 24 6 8.2433 -2.4814 -3.5659 25 6 3.5694 -0.7221 -1.2496 26 6 2.0394 -0.7216 -1.2493 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7490 1.2492 34 1 1.6767 -0.2075 2.1392 35 1 3.9333 -1.2354 2.1390 36 1 3.9337 0.3057 1.2487 37 1 3.7158 -2.4710 -0.0002 38 1 5.9732 -1.8775 0.9303 39 1 5.9728 -0.4197 -0.0910 40 1 5.7232 -3.1743 -1.1099 41 1 7.9441 -2.7011 -0.2446 42 1 7.9443 -1.2431 -1.2657 43 1 8.0760 -4.9121 -1.2341 44 1 8.8329 -6.2622 -3.1475 45 1 9.2029 -5.1998 -5.3367 46 1 9.7837 -1.1794 -9.1114 47 1 8.0780 -1.4205 -3.6819 48 1 3.9332 0.3054 -1.2498 49 1 3.9328 -1.2360 -2.1396 50 1 1.6758 -1.7491 -1.2491 51 1 1.6761 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314470781.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = -54.000539 kcal Electronic energy + Delta-G solvation = -26114.838899 eV Core-core repulsion = 22591.410634 eV Total energy + Delta-G solvation = -3523.428265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81860 -40.53774 -38.64149 -36.98928 -34.44589 -34.15635 -31.91014 -31.60252 -30.67417 -28.47057 -28.16419 -27.36761 -25.82396 -23.92609 -23.37514 -23.22485 -22.24428 -21.31781 -19.51315 -19.25242 -18.73886 -16.95442 -16.59341 -16.41011 -16.15476 -15.97184 -15.73081 -15.65394 -15.50302 -15.32297 -14.80874 -14.80273 -14.39468 -14.09404 -13.92676 -13.82101 -13.60766 -13.20069 -13.09131 -12.98003 -12.78672 -12.71952 -12.59500 -12.49264 -12.29224 -12.22118 -12.13437 -12.07525 -12.01008 -11.75656 -11.59897 -11.16908 -10.97871 -10.85081 -10.81097 -10.72515 -9.67276 -9.26076 -8.96291 -8.46440 -6.14911 0.54552 0.75833 1.34577 1.43336 1.53241 2.17857 2.79964 3.11861 3.39478 3.53817 3.73684 3.83478 3.89573 4.01519 4.12786 4.15088 4.28377 4.32678 4.35187 4.47325 4.54817 4.55952 4.60298 4.65523 4.68408 4.71409 4.76096 4.78353 4.86325 4.87261 4.90909 5.01040 5.07800 5.11286 5.13333 5.14117 5.17043 5.24119 5.26733 5.32141 5.32715 5.35819 5.52185 5.55530 5.65522 5.68204 5.74030 5.74988 5.79094 6.03854 6.11014 6.27005 6.52339 6.98301 7.80682 8.77378 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017262 B = 0.002312 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.643230 B =12109.255141 C =13126.926182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.111 4.111 6 C -0.075 4.075 7 C 0.067 3.933 8 N -0.693 5.693 9 C 0.113 3.887 10 C -0.037 4.037 11 C -0.183 4.183 12 C -0.072 4.072 13 C -0.245 4.245 14 C 0.111 3.889 15 O -0.235 6.235 16 C -0.412 4.412 17 H 0.101 0.899 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.268 1.268 23 H -0.268 1.268 24 C -0.183 4.183 25 C -0.106 4.106 26 C -0.108 4.108 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.345 0.655 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.058 0.942 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.810 -0.983 21.601 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.094 4.094 7 C -0.062 4.062 8 N -0.325 5.325 9 C -0.016 4.016 10 C -0.037 4.037 11 C -0.202 4.202 12 C -0.090 4.090 13 C -0.265 4.265 14 C 0.061 3.939 15 O -0.142 6.142 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.839 3.161 21 H -0.174 1.174 22 H -0.193 1.193 23 H -0.193 1.193 24 C -0.203 4.203 25 C -0.143 4.143 26 C -0.145 4.145 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.163 0.837 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.076 0.924 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.880 -0.072 20.942 25.124 hybrid contribution 0.647 -0.630 -0.616 1.093 sum -13.233 -0.701 20.326 24.264 Atomic orbital electron populations 1.21855 0.94334 1.01765 1.01795 1.20536 0.95383 0.95454 0.95099 1.21958 1.01322 0.95324 1.01469 1.21540 0.95097 1.00341 0.97015 1.21565 0.95781 1.00800 0.96774 1.21072 0.93363 0.99683 0.95236 1.22038 0.95167 0.98027 0.90978 1.60383 1.06676 1.19593 1.45799 1.20732 0.88306 0.98795 0.93750 1.19586 0.96601 0.94361 0.93167 1.20984 1.06549 0.92934 0.99721 1.21130 0.96161 1.00401 0.91272 1.21296 1.11056 0.94097 1.00036 1.19925 0.94614 0.92879 0.86487 1.83946 1.73148 1.39813 1.17278 1.21862 1.41740 0.93248 0.91969 0.88140 1.26612 0.97343 0.97931 1.00341 1.70198 1.47363 1.12996 1.25548 0.84518 0.77798 0.77732 0.76060 1.17419 1.19336 1.19305 1.20200 1.09078 0.99089 0.91942 1.21458 0.94971 1.00091 0.97821 1.21597 0.95500 1.00112 0.97302 0.92034 0.93082 0.92657 0.92406 0.93438 0.92167 0.92057 0.91212 0.91249 0.91649 0.91481 0.94072 0.91735 0.83677 0.92199 0.91112 0.83520 0.83680 0.86545 0.91884 0.88040 0.92697 0.93174 0.92362 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.47 71.98 0.61 -1.24 16 2 C -0.06 -0.95 0.77 -52.18 -0.04 -0.99 16 3 C -0.14 -2.15 7.78 71.98 0.56 -1.59 16 4 C -0.10 -1.33 4.73 30.59 0.14 -1.19 16 5 C -0.11 -1.52 4.93 30.59 0.15 -1.37 16 6 C -0.07 -1.28 2.33 -10.79 -0.03 -1.30 16 7 C 0.07 1.25 5.07 86.30 0.44 1.69 16 8 N -0.69 -16.61 5.94 -517.91 -3.08 -19.69 16 9 C 0.11 2.93 5.81 85.56 0.50 3.43 16 10 C -0.04 -1.24 5.39 -19.88 -0.11 -1.35 16 11 C -0.18 -5.59 9.70 22.30 0.22 -5.37 16 12 C -0.07 -2.46 10.04 22.25 0.22 -2.23 16 13 C -0.25 -10.92 9.17 22.39 0.21 -10.72 16 14 C 0.11 5.72 6.65 22.58 0.15 5.87 16 15 O -0.23 -14.62 9.76 -22.74 -0.22 -14.84 16 16 C -0.41 -24.61 9.49 67.92 0.64 -23.97 16 17 H 0.10 5.52 5.21 -2.91 -0.02 5.50 16 18 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 19 N -0.92 -57.96 13.67 21.61 0.30 -57.66 16 20 Si 1.02 43.73 29.55 68.60 2.03 45.76 16 21 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 24 C -0.18 -8.17 9.65 22.39 0.22 -7.96 16 25 C -0.11 -2.20 4.82 30.59 0.15 -2.05 16 26 C -0.11 -1.97 4.73 30.59 0.14 -1.82 16 27 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.93 4.81 -2.39 -0.01 0.92 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.92 6.43 -2.38 -0.02 0.91 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.34 7.76 8.72 -89.69 -0.78 6.98 16 41 H 0.06 1.26 8.08 -2.38 -0.02 1.24 16 42 H 0.07 1.94 8.08 -2.39 -0.02 1.92 16 43 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.12 5.28 5.64 -2.91 -0.02 5.26 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 48 H 0.05 1.20 6.43 -2.39 -0.02 1.18 16 49 H 0.05 1.31 7.75 -2.38 -0.02 1.29 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -70.43 394.75 3.78 -66.65 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.11 Total: 32.95 kcal Atomic # 6 Polarization: -57.81 SS G_CDS: 4.64 Total: -53.17 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.78 Total: -77.35 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -70.43 3.78 -66.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314470781.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.649 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds