Wall clock time and date at job start Tue Mar 31 2020 11:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48504 * 109.47345 * 270.00122 * 3 2 1 5 5 H 1.48499 * 109.47241 * 30.00456 * 3 2 1 6 6 H 1.48505 * 109.47204 * 150.00324 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.53036 * 109.45676 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.31104 * 181.37292 * 10 9 7 12 12 N 1.46923 * 108.77245 * 305.36573 * 11 10 9 13 13 C 1.34778 * 120.62607 * 233.58173 * 12 11 10 14 14 O 1.21273 * 120.00465 * 5.43644 * 13 12 11 15 15 C 1.50709 * 119.99747 * 185.43650 * 13 12 11 16 16 C 1.52999 * 109.47131 * 64.95666 * 15 13 12 17 17 C 1.53002 * 109.46977 * 60.00385 * 16 15 13 18 18 C 1.52993 * 109.47250 * 59.99583 * 17 16 15 19 19 C 1.53005 * 109.47053 * 60.00363 * 18 17 16 20 20 C 1.53000 * 109.46821 * 299.99524 * 19 18 17 21 21 C 1.52999 * 109.46588 * 180.02562 * 16 15 13 22 22 C 1.53004 * 109.47215 * 300.00322 * 20 19 18 23 23 C 1.52996 * 109.47405 * 59.99986 * 22 20 19 24 24 C 1.52999 * 109.47471 * 300.00115 * 18 17 16 25 25 C 1.46926 * 118.74041 * 53.86114 * 12 11 10 26 26 C 1.53039 * 109.44962 * 300.06101 * 9 7 2 27 27 H 0.97006 * 120.00284 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46010 * 60.03094 * 9 7 2 29 29 H 1.09001 * 109.50528 * 61.42352 * 10 9 7 30 30 H 1.09004 * 109.52540 * 301.33782 * 10 9 7 31 31 H 1.09002 * 109.58524 * 185.57609 * 11 10 9 32 32 H 1.08999 * 109.70119 * 65.22495 * 11 10 9 33 33 H 1.08999 * 109.46725 * 304.95643 * 15 13 12 34 34 H 1.09002 * 109.47088 * 300.00047 * 16 15 13 35 35 H 1.08998 * 109.46809 * 179.97438 * 17 16 15 36 36 H 1.09006 * 109.46890 * 299.99620 * 17 16 15 37 37 H 1.08999 * 109.47042 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.46750 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47352 * 59.99473 * 19 18 17 40 40 H 1.08997 * 109.47090 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47537 * 60.00697 * 21 16 15 42 42 H 1.09008 * 109.46906 * 180.02562 * 21 16 15 43 43 H 1.08999 * 109.46973 * 180.02562 * 22 20 19 44 44 H 1.09002 * 109.46854 * 299.99935 * 22 20 19 45 45 H 1.08991 * 109.47403 * 179.97438 * 23 22 20 46 46 H 1.09006 * 109.47000 * 300.00167 * 24 18 17 47 47 H 1.08998 * 109.47459 * 180.02562 * 24 18 17 48 48 H 1.08995 * 109.58759 * 65.92594 * 25 12 11 49 49 H 1.09005 * 109.58527 * 186.34954 * 25 12 11 50 50 H 1.09000 * 109.49814 * 298.57277 * 26 9 7 51 51 H 1.09006 * 109.49576 * 58.66930 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0213 -2.6369 -0.0023 11 6 5.5529 -2.6331 0.0318 12 7 6.0487 -1.8171 -1.0849 13 6 6.9424 -2.3202 -1.9592 14 8 7.2706 -3.4855 -1.8880 15 6 7.5340 -1.4347 -3.0256 16 6 8.3789 -0.3409 -2.3693 17 6 9.5053 -0.9844 -1.5580 18 6 10.3873 -1.8226 -2.4856 19 6 10.9879 -0.9235 -3.5682 20 6 9.8615 -0.2801 -4.3795 21 6 8.9789 0.5584 -3.4519 22 6 9.0166 -1.3739 -5.0357 23 6 8.4160 -2.2729 -3.9532 24 6 9.5424 -2.9163 -3.1419 25 6 5.5563 -0.4400 -1.2266 26 6 4.0206 -0.4708 -1.2501 27 1 -0.4851 0.8401 0.0004 28 1 3.8750 -0.6808 0.8891 29 1 3.6788 -3.1432 -0.9048 30 1 3.6392 -3.1590 0.8750 31 1 5.9232 -3.6534 -0.0687 32 1 5.8985 -2.2103 0.9751 33 1 6.7316 -0.9763 -3.6035 34 1 7.7505 0.2563 -1.7085 35 1 10.1075 -0.2051 -1.0909 36 1 9.0774 -1.6249 -0.7867 37 1 11.1900 -2.2806 -1.9077 38 1 11.6166 -1.5206 -4.2287 39 1 11.5898 -0.1443 -3.1006 40 1 10.2894 0.3600 -5.1510 41 1 8.1763 1.0169 -4.0295 42 1 9.5813 1.3375 -2.9844 43 1 8.2144 -0.9155 -5.6140 44 1 9.6450 -1.9711 -5.6965 45 1 7.8137 -3.0518 -4.4206 46 1 9.1145 -3.5568 -2.3706 47 1 10.1708 -3.5138 -3.8023 48 1 5.9001 0.1595 -0.3838 49 1 5.9289 -0.0128 -2.1577 50 1 3.6780 -0.9978 -2.1406 51 1 3.6379 0.5498 -1.2609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334470920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:43 Heat of formation + Delta-G solvation = -61.658781 kcal Electronic energy + Delta-G solvation = -29238.691250 eV Core-core repulsion = 25714.930899 eV Total energy + Delta-G solvation = -3523.760351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94299 -39.27362 -37.03003 -33.84850 -32.90207 -32.71387 -32.49125 -31.36018 -30.49471 -27.14710 -26.04549 -25.83831 -23.08885 -22.79765 -21.69772 -21.51443 -21.47475 -19.98573 -18.63805 -17.53425 -16.88745 -16.54041 -15.51680 -15.43578 -15.17607 -14.66413 -14.49174 -14.05010 -13.95293 -13.62947 -13.50366 -13.43227 -13.26891 -13.04954 -12.82534 -12.71927 -12.63195 -12.49656 -12.25481 -12.01166 -11.82006 -11.34462 -11.07435 -11.01428 -10.95453 -10.94560 -10.78651 -10.71374 -10.22825 -10.19071 -10.02756 -9.76974 -9.74782 -9.73203 -9.35793 -9.15735 -8.97818 -8.59265 -8.15213 -6.11799 -4.11106 2.87701 3.18356 3.28528 3.29424 3.35990 4.34399 4.34897 4.38154 4.40734 4.82816 4.94031 4.98362 5.02977 5.09667 5.14084 5.17715 5.22328 5.26989 5.28082 5.32940 5.42842 5.56735 5.59660 5.63136 5.63914 5.66733 5.75644 5.81567 5.83753 5.89504 5.90840 5.93462 5.95044 5.95902 5.99219 6.00945 6.17812 6.19348 6.28954 6.33557 6.40515 6.42473 6.56564 6.62682 6.66500 6.76605 6.91959 7.17291 7.46235 7.70147 7.77712 8.47518 8.48141 8.92785 9.50080 11.01679 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.004025 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.431840 B = 6954.612058 C = 7545.562361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.073 0.927 9 C 0.015 3.985 10 C -0.112 4.112 11 C 0.108 3.892 12 N -0.601 5.601 13 C 0.522 3.478 14 O -0.547 6.547 15 C -0.097 4.097 16 C -0.081 4.081 17 C -0.108 4.108 18 C -0.085 4.085 19 C -0.107 4.107 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.109 4.109 23 C -0.062 4.062 24 C -0.122 4.122 25 C 0.100 3.900 26 C -0.135 4.135 27 H 0.264 0.736 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.065 0.935 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.818 0.945 -7.515 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.091 0.909 9 C -0.004 4.004 10 C -0.150 4.150 11 C -0.014 4.014 12 N -0.333 5.333 13 C 0.311 3.689 14 O -0.426 6.426 15 C -0.118 4.118 16 C -0.100 4.100 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.080 4.080 24 C -0.159 4.159 25 C -0.022 4.022 26 C -0.173 4.173 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.811 0.438 -7.459 23.055 hybrid contribution 0.112 1.177 -0.061 1.184 sum 21.923 1.615 -7.520 23.233 Atomic orbital electron populations 1.69898 1.06313 1.26929 1.50748 1.25044 0.94692 0.99036 0.94544 0.86873 0.80017 0.83707 0.77802 1.20551 1.22458 1.18989 1.21059 0.88767 0.94491 1.50790 0.90859 1.19120 0.96778 0.91735 0.92738 1.21810 0.91890 0.99466 1.01876 1.21746 0.96049 0.95768 0.87802 1.48130 1.42323 1.14514 1.28332 1.20487 0.78460 0.87977 0.82026 1.90540 1.61224 1.17557 1.73297 1.21312 0.98255 0.96365 0.95907 1.21146 0.96518 0.95333 0.97006 1.21530 0.96566 0.98939 0.97478 1.21037 0.97322 0.95928 0.96039 1.21544 0.96891 0.98619 0.97371 1.21059 0.95777 0.96489 0.97119 1.21549 0.99044 0.97166 0.96634 1.21577 0.99069 0.96866 0.97125 1.20770 0.96098 0.96508 0.94667 1.21848 0.96043 0.97523 1.00523 1.22097 0.96822 0.82064 1.01248 1.22464 0.91508 1.01035 1.02315 0.92652 0.95445 0.92334 0.91464 0.89902 0.92211 0.88946 0.90243 0.92013 0.91965 0.91652 0.92223 0.92352 0.91434 0.91735 0.91696 0.92019 0.91822 0.90879 0.88402 0.92783 0.91860 0.90536 0.91624 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.91 5.45 -17.82 -0.10 1.82 16 3 Si 0.89 20.94 24.38 -169.99 -4.14 16.79 16 4 H -0.28 -6.33 6.86 56.52 0.39 -5.94 16 5 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16 7 C -0.51 -13.96 9.14 -34.44 -0.31 -14.28 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.77 16 9 C 0.02 0.34 1.66 -91.73 -0.15 0.19 16 10 C -0.11 -2.18 5.30 -26.61 -0.14 -2.32 16 11 C 0.11 1.82 6.44 -3.71 -0.02 1.80 16 12 N -0.60 -9.75 2.97 -172.50 -0.51 -10.26 16 13 C 0.52 8.18 5.56 -10.98 -0.06 8.12 16 14 O -0.55 -9.85 12.91 5.56 0.07 -9.78 16 15 C -0.10 -1.22 1.43 -91.77 -0.13 -1.35 16 16 C -0.08 -0.89 2.36 -90.62 -0.21 -1.10 16 17 C -0.11 -1.19 4.97 -26.73 -0.13 -1.32 16 18 C -0.08 -0.88 3.19 -90.62 -0.29 -1.17 16 19 C -0.11 -0.94 5.19 -26.73 -0.14 -1.08 16 20 C -0.09 -0.76 3.20 -90.59 -0.29 -1.04 16 21 C -0.11 -0.98 5.20 -26.71 -0.14 -1.11 16 22 C -0.11 -1.03 5.19 -26.73 -0.14 -1.17 16 23 C -0.06 -0.72 2.39 -90.62 -0.22 -0.94 16 24 C -0.12 -1.46 4.90 -26.73 -0.13 -1.59 16 25 C 0.10 1.59 4.93 -3.49 -0.02 1.57 16 26 C -0.14 -2.69 4.86 -26.39 -0.13 -2.82 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 28 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.40 7.00 -51.93 -0.36 1.04 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.13 7.20 -51.93 -0.37 0.76 16 34 H 0.08 0.89 5.79 -51.93 -0.30 0.59 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.81 7.22 -51.93 -0.37 0.43 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.10 1.44 5.33 -51.93 -0.28 1.16 16 47 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 49 H 0.08 1.03 4.98 -51.93 -0.26 0.77 16 50 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 51 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -29.75 350.59 -10.14 -39.89 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.85 Total: 2.21 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -2.76 Total: -17.82 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.26 Total: -36.58 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.14 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.75 -10.14 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334470920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.773 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds