Wall clock time and date at job start Tue Mar 31 2020 11:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 119.99778 * 2 1 4 4 H 1.48504 * 109.47345 * 270.00122 * 3 2 1 5 5 H 1.48499 * 109.47241 * 30.00456 * 3 2 1 6 6 H 1.48505 * 109.47204 * 150.00324 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99940 * 179.97438 * 7 2 1 10 10 C 1.53036 * 109.45676 * 180.02562 * 9 7 2 11 11 C 1.53200 * 109.31104 * 181.37292 * 10 9 7 12 12 N 1.46923 * 108.77245 * 305.36573 * 11 10 9 13 13 C 1.34778 * 120.62607 * 233.58173 * 12 11 10 14 14 O 1.21273 * 120.00465 * 5.43644 * 13 12 11 15 15 C 1.50709 * 119.99747 * 185.43650 * 13 12 11 16 16 C 1.52999 * 109.47131 * 64.95666 * 15 13 12 17 17 C 1.53002 * 109.46977 * 60.00385 * 16 15 13 18 18 C 1.52993 * 109.47250 * 59.99583 * 17 16 15 19 19 C 1.53005 * 109.47053 * 60.00363 * 18 17 16 20 20 C 1.53000 * 109.46821 * 299.99524 * 19 18 17 21 21 C 1.52999 * 109.46588 * 180.02562 * 16 15 13 22 22 C 1.53004 * 109.47215 * 300.00322 * 20 19 18 23 23 C 1.52996 * 109.47405 * 59.99986 * 22 20 19 24 24 C 1.52999 * 109.47471 * 300.00115 * 18 17 16 25 25 C 1.46926 * 118.74041 * 53.86114 * 12 11 10 26 26 C 1.53039 * 109.44962 * 300.06101 * 9 7 2 27 27 H 0.97006 * 120.00284 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46010 * 60.03094 * 9 7 2 29 29 H 1.09001 * 109.50528 * 61.42352 * 10 9 7 30 30 H 1.09004 * 109.52540 * 301.33782 * 10 9 7 31 31 H 1.09002 * 109.58524 * 185.57609 * 11 10 9 32 32 H 1.08999 * 109.70119 * 65.22495 * 11 10 9 33 33 H 1.08999 * 109.46725 * 304.95643 * 15 13 12 34 34 H 1.09002 * 109.47088 * 300.00047 * 16 15 13 35 35 H 1.08998 * 109.46809 * 179.97438 * 17 16 15 36 36 H 1.09006 * 109.46890 * 299.99620 * 17 16 15 37 37 H 1.08999 * 109.47042 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.46750 * 179.97438 * 19 18 17 39 39 H 1.08998 * 109.47352 * 59.99473 * 19 18 17 40 40 H 1.08997 * 109.47090 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47537 * 60.00697 * 21 16 15 42 42 H 1.09008 * 109.46906 * 180.02562 * 21 16 15 43 43 H 1.08999 * 109.46973 * 180.02562 * 22 20 19 44 44 H 1.09002 * 109.46854 * 299.99935 * 22 20 19 45 45 H 1.08991 * 109.47403 * 179.97438 * 23 22 20 46 46 H 1.09006 * 109.47000 * 300.00167 * 24 18 17 47 47 H 1.08998 * 109.47459 * 180.02562 * 24 18 17 48 48 H 1.08995 * 109.58759 * 65.92594 * 25 12 11 49 49 H 1.09005 * 109.58527 * 186.34954 * 25 12 11 50 50 H 1.09000 * 109.49814 * 298.57277 * 26 9 7 51 51 H 1.09006 * 109.49576 * 58.66930 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0213 -2.6369 -0.0023 11 6 5.5529 -2.6331 0.0318 12 7 6.0487 -1.8171 -1.0849 13 6 6.9424 -2.3202 -1.9592 14 8 7.2706 -3.4855 -1.8880 15 6 7.5340 -1.4347 -3.0256 16 6 8.3789 -0.3409 -2.3693 17 6 9.5053 -0.9844 -1.5580 18 6 10.3873 -1.8226 -2.4856 19 6 10.9879 -0.9235 -3.5682 20 6 9.8615 -0.2801 -4.3795 21 6 8.9789 0.5584 -3.4519 22 6 9.0166 -1.3739 -5.0357 23 6 8.4160 -2.2729 -3.9532 24 6 9.5424 -2.9163 -3.1419 25 6 5.5563 -0.4400 -1.2266 26 6 4.0206 -0.4708 -1.2501 27 1 -0.4851 0.8401 0.0004 28 1 3.8750 -0.6808 0.8891 29 1 3.6788 -3.1432 -0.9048 30 1 3.6392 -3.1590 0.8750 31 1 5.9232 -3.6534 -0.0687 32 1 5.8985 -2.2103 0.9751 33 1 6.7316 -0.9763 -3.6035 34 1 7.7505 0.2563 -1.7085 35 1 10.1075 -0.2051 -1.0909 36 1 9.0774 -1.6249 -0.7867 37 1 11.1900 -2.2806 -1.9077 38 1 11.6166 -1.5206 -4.2287 39 1 11.5898 -0.1443 -3.1006 40 1 10.2894 0.3600 -5.1510 41 1 8.1763 1.0169 -4.0295 42 1 9.5813 1.3375 -2.9844 43 1 8.2144 -0.9155 -5.6140 44 1 9.6450 -1.9711 -5.6965 45 1 7.8137 -3.0518 -4.4206 46 1 9.1145 -3.5568 -2.3706 47 1 10.1708 -3.5138 -3.8023 48 1 5.9001 0.1595 -0.3838 49 1 5.9289 -0.0128 -2.1577 50 1 3.6780 -0.9978 -2.1406 51 1 3.6379 0.5498 -1.2609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334470920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:42 Heat of formation + Delta-G solvation = -77.669330 kcal Electronic energy + Delta-G solvation = -29239.385519 eV Core-core repulsion = 25714.930899 eV Total energy + Delta-G solvation = -3524.454620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.85791 -40.50035 -38.47422 -35.44313 -34.15529 -33.53038 -33.33884 -33.02197 -31.89940 -28.55466 -27.25492 -26.69817 -24.58367 -24.26844 -22.74734 -22.37716 -22.26977 -21.40169 -19.95433 -18.87554 -18.47459 -17.88987 -16.74727 -16.62496 -16.39322 -16.01083 -15.36141 -15.22695 -15.06764 -15.02086 -14.83314 -14.46271 -14.31244 -14.29386 -14.04488 -13.91429 -13.79509 -13.58974 -13.48398 -13.26581 -13.11521 -12.75935 -12.31775 -12.23708 -12.05653 -11.86936 -11.77062 -11.71711 -11.67506 -11.63276 -11.47062 -11.17364 -11.03067 -11.01080 -10.65548 -10.55248 -10.51866 -10.11709 -9.53447 -8.28246 -6.33696 1.31811 1.39480 1.50177 1.66603 2.06563 2.35032 3.06701 3.42796 3.53691 3.61112 3.85093 3.98192 4.11690 4.13585 4.18265 4.21242 4.24734 4.29655 4.32775 4.37772 4.41839 4.45059 4.47737 4.50191 4.57423 4.63006 4.71919 4.78572 4.82395 4.86876 4.90055 4.94872 4.98229 5.03592 5.09218 5.12958 5.15431 5.18600 5.23418 5.24259 5.25997 5.37039 5.40795 5.53595 5.58632 5.63439 5.64511 5.67083 5.72075 5.74713 6.31188 6.51063 6.73311 7.23889 7.31944 8.89060 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022209 B = 0.004025 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.431840 B = 6954.612058 C = 7545.562361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.258 1.258 5 H -0.303 1.303 6 H -0.234 1.234 7 C -0.523 4.523 8 H 0.024 0.976 9 C 0.016 3.984 10 C -0.106 4.106 11 C 0.117 3.883 12 N -0.606 5.606 13 C 0.518 3.482 14 O -0.575 6.575 15 C -0.095 4.095 16 C -0.080 4.080 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.103 4.103 20 C -0.084 4.084 21 C -0.104 4.104 22 C -0.105 4.105 23 C -0.063 4.063 24 C -0.121 4.121 25 C 0.108 3.892 26 C -0.133 4.133 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.108 0.892 50 H 0.051 0.949 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.458 3.928 -8.592 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.190 4.190 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.231 1.231 6 H -0.157 1.157 7 C -0.561 4.561 8 H 0.042 0.958 9 C -0.003 4.003 10 C -0.144 4.144 11 C -0.005 4.005 12 N -0.338 5.338 13 C 0.308 3.692 14 O -0.456 6.456 15 C -0.116 4.116 16 C -0.098 4.098 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.082 4.082 24 C -0.159 4.159 25 C -0.014 4.014 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.126 0.874 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.480 3.403 -8.545 27.089 hybrid contribution -1.120 0.034 0.302 1.161 sum 24.360 3.437 -8.243 25.945 Atomic orbital electron populations 1.70078 1.08603 1.28113 1.52742 1.26023 0.95482 1.03544 0.93990 0.85798 0.79549 0.77770 0.79129 1.18396 1.23126 1.15721 1.21387 0.91733 0.92744 1.50243 0.95788 1.19074 0.93290 0.93677 0.94281 1.21687 0.94171 0.97787 1.00751 1.21572 0.93534 0.96243 0.89178 1.48207 1.42548 1.14752 1.28280 1.21150 0.77884 0.88009 0.82109 1.90545 1.61996 1.19084 1.73954 1.21389 0.98769 0.96440 0.94967 1.21182 0.96197 0.94834 0.97609 1.21519 0.96898 0.98976 0.97029 1.21031 0.96966 0.95709 0.96551 1.21527 0.97056 0.98614 0.96824 1.21092 0.95461 0.96256 0.97466 1.21569 0.99505 0.96984 0.96062 1.21564 0.99495 0.96838 0.96351 1.20769 0.95729 0.96486 0.95167 1.21766 0.96424 0.97864 0.99804 1.22118 0.93433 0.82021 1.03816 1.22313 0.94807 0.99957 1.00020 0.92623 0.94882 0.94367 0.91887 0.90298 0.90360 0.88144 0.89958 0.90382 0.94593 0.91690 0.91671 0.91005 0.89475 0.90841 0.90166 0.91303 0.91170 0.93009 0.91700 0.92353 0.89930 0.87410 0.93045 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.01 0.34 5.45 84.66 0.46 0.80 16 3 Si 0.95 42.23 24.38 68.60 1.67 43.91 16 4 H -0.26 -10.59 6.86 99.48 0.68 -9.91 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.23 -9.15 6.53 99.48 0.65 -8.50 16 7 C -0.52 -29.51 9.14 25.60 0.23 -29.27 16 8 H 0.02 1.53 7.99 -2.91 -0.02 1.50 16 9 C 0.02 0.69 1.66 -11.51 -0.02 0.67 16 10 C -0.11 -4.18 5.30 30.67 0.16 -4.02 16 11 C 0.12 3.86 6.44 86.37 0.56 4.42 16 12 N -0.61 -18.65 2.97 -818.06 -2.43 -21.08 16 13 C 0.52 15.73 5.56 87.66 0.49 16.22 16 14 O -0.58 -20.96 12.91 -3.01 -0.04 -21.00 16 15 C -0.09 -2.16 1.43 -11.54 -0.02 -2.17 16 16 C -0.08 -1.45 2.36 -10.79 -0.03 -1.47 16 17 C -0.11 -2.07 4.97 30.59 0.15 -1.92 16 18 C -0.08 -1.56 3.19 -10.79 -0.03 -1.60 16 19 C -0.10 -1.42 5.19 30.60 0.16 -1.26 16 20 C -0.08 -1.10 3.20 -10.78 -0.03 -1.14 16 21 C -0.10 -1.39 5.20 30.61 0.16 -1.23 16 22 C -0.11 -1.66 5.19 30.59 0.16 -1.50 16 23 C -0.06 -1.38 2.39 -10.79 -0.03 -1.40 16 24 C -0.12 -2.79 4.90 30.59 0.15 -2.64 16 25 C 0.11 3.06 4.93 86.51 0.43 3.48 16 26 C -0.13 -5.03 4.86 30.82 0.15 -4.88 16 27 H 0.26 15.45 8.31 -92.70 -0.77 14.68 16 28 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 2.14 7.20 -2.39 -0.02 2.13 16 34 H 0.08 1.47 5.79 -2.39 -0.01 1.45 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.04 0.88 7.22 -2.38 -0.02 0.86 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.94 5.33 -2.38 -0.01 1.93 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 49 H 0.11 2.41 4.98 -2.38 -0.01 2.40 16 50 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.05 2.09 3.24 -2.38 -0.01 2.08 16 Total: -1.00 -68.41 350.59 3.43 -64.99 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.82 Total: 21.39 kcal Atomic # 6 Polarization: -32.02 SS G_CDS: 3.10 Total: -28.92 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.13 Total: -80.37 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.04 Total: -21.00 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.67 Total: 43.91 kcal Total: -68.41 3.43 -64.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334470920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.683 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds