Wall clock time and date at job start Tue Mar 31 2020 11:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47358 * 300.00473 * 3 2 1 6 6 H 1.48498 * 109.47169 * 60.00201 * 3 2 1 7 7 C 1.37883 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99471 * 180.27193 * 7 2 1 9 9 C 1.50699 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46080 * 300.03097 * 9 7 2 11 11 C 1.53196 * 109.31290 * 178.60045 * 10 9 7 12 12 N 1.46927 * 108.76100 * 54.65336 * 11 10 9 13 13 C 1.34784 * 120.62797 * 126.36424 * 12 11 10 14 14 O 1.21281 * 120.00008 * 174.72292 * 13 12 11 15 15 C 1.50701 * 119.99787 * 354.72323 * 13 12 11 16 16 C 1.52996 * 109.46964 * 62.01139 * 15 13 12 17 17 C 1.53007 * 109.46804 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.47246 * 60.00245 * 17 16 15 19 19 C 1.53002 * 109.46643 * 299.99956 * 18 17 16 20 20 C 1.52998 * 109.47279 * 299.99757 * 19 18 17 21 21 C 1.53001 * 109.46900 * 60.00183 * 20 19 18 22 22 C 1.52993 * 109.47215 * 299.99980 * 21 20 19 23 23 C 1.52998 * 109.46988 * 182.01253 * 15 13 12 24 24 C 1.52999 * 109.47485 * 60.00040 * 19 18 17 25 25 C 1.46928 * 118.74365 * 306.38332 * 12 11 10 26 26 C 1.53041 * 109.45878 * 179.97438 * 9 7 2 27 27 H 0.97004 * 119.99323 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.45906 * 60.00305 * 9 7 2 29 29 H 1.09001 * 109.49771 * 298.56657 * 10 9 7 30 30 H 1.09002 * 109.49858 * 58.66333 * 10 9 7 31 31 H 1.08998 * 109.59816 * 294.87144 * 11 10 9 32 32 H 1.08995 * 109.70312 * 174.50780 * 11 10 9 33 33 H 1.08998 * 109.47459 * 299.99370 * 16 15 13 34 34 H 1.09000 * 109.47541 * 60.00100 * 16 15 13 35 35 H 1.09005 * 109.46931 * 179.97438 * 17 16 15 36 36 H 1.08994 * 109.47353 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47024 * 59.99537 * 18 17 16 38 38 H 1.09003 * 109.46656 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.46888 * 300.00348 * 20 19 18 40 40 H 1.08997 * 109.47160 * 180.02562 * 20 19 18 41 41 H 1.09003 * 109.46876 * 179.97438 * 21 20 19 42 42 H 1.09003 * 109.46865 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47561 * 299.99821 * 22 21 20 44 44 H 1.09003 * 109.47226 * 300.00028 * 23 15 13 45 45 H 1.09005 * 109.47311 * 60.00005 * 23 15 13 46 46 H 1.08994 * 109.47513 * 179.97438 * 24 19 18 47 47 H 1.09003 * 109.46966 * 59.99497 * 24 19 18 48 48 H 1.08992 * 109.58582 * 293.82504 * 25 12 11 49 49 H 1.08993 * 109.58548 * 173.39544 * 25 12 11 50 50 H 1.09002 * 109.49401 * 301.33592 * 26 9 7 51 51 H 1.08995 * 109.49534 * 61.40162 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 0.0039 9 6 1.2509 -2.4992 -0.0005 10 6 0.3711 -2.5799 1.2490 11 6 -0.4196 -3.8919 1.2281 12 7 0.5229 -5.0093 1.0807 13 6 0.5132 -6.0356 1.9544 14 8 1.2290 -6.9969 1.7687 15 6 -0.3873 -5.9886 3.1619 16 6 -1.8469 -5.9265 2.7075 17 6 -2.7610 -5.8794 3.9336 18 6 -2.4331 -4.6389 4.7670 19 6 -0.9734 -4.7011 5.2213 20 6 -0.7559 -5.9566 6.0682 21 6 -1.0839 -7.1970 5.2348 22 6 -2.5435 -7.1349 4.7805 23 6 -0.1699 -7.2438 4.0093 24 6 -0.0592 -4.7482 3.9953 25 6 1.4765 -4.9867 -0.0368 26 6 2.2456 -3.6623 -0.0018 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5565 -0.8904 29 1 0.9994 -2.5477 2.1391 30 1 -0.3214 -1.7382 1.2614 31 1 -1.1143 -3.8867 0.3882 32 1 -0.9739 -4.0018 2.1601 33 1 -2.0018 -5.0322 2.1039 34 1 -2.0807 -6.8104 2.1142 35 1 -3.8010 -5.8347 3.6099 36 1 -3.0840 -4.6056 5.6406 37 1 -2.5880 -3.7445 4.1636 38 1 -0.7397 -3.8171 5.8147 39 1 -1.4071 -5.9230 6.9416 40 1 0.2839 -6.0006 6.3922 41 1 -0.9285 -8.0915 5.8380 42 1 -2.7773 -8.0189 4.1871 43 1 -3.1948 -7.1014 5.6539 44 1 -0.4036 -8.1278 3.4159 45 1 0.8701 -7.2881 4.3330 46 1 0.9806 -4.7920 4.3190 47 1 -0.2142 -3.8537 3.3920 48 1 0.9364 -5.0707 -0.9798 49 1 2.1750 -5.8175 0.0620 50 1 2.8875 -3.5910 -0.8799 51 1 2.8565 -3.6195 0.8998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336378351.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:39 Heat of formation + Delta-G solvation = -69.438699 kcal Electronic energy + Delta-G solvation = -29462.660414 eV Core-core repulsion = 25938.562700 eV Total energy + Delta-G solvation = -3524.097713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.00437 -40.46599 -38.45027 -35.50032 -34.31452 -33.52597 -33.46897 -32.62011 -31.53387 -28.13976 -26.89069 -26.79353 -25.34850 -24.10247 -23.16712 -22.38666 -22.30350 -21.21550 -19.83221 -18.50313 -18.36790 -17.69053 -16.94088 -16.49551 -16.16337 -15.72042 -15.47182 -15.40287 -15.14113 -14.83942 -14.70289 -14.50579 -14.32177 -14.17282 -14.05946 -13.92227 -13.67299 -13.47129 -13.29489 -13.23124 -12.84553 -12.61141 -12.44730 -12.19026 -11.96617 -11.84965 -11.81762 -11.77359 -11.70440 -11.67202 -11.45037 -11.40978 -11.02474 -10.88765 -10.54698 -10.43681 -10.42880 -10.15253 -9.54970 -8.08183 -6.21150 1.39728 1.43340 1.53032 1.60422 2.09265 2.43914 3.18393 3.32339 3.53793 3.57818 3.91898 4.07038 4.13369 4.15850 4.22418 4.26962 4.28703 4.29396 4.32117 4.35421 4.41344 4.44246 4.49382 4.53585 4.62205 4.75186 4.80971 4.82343 4.85658 4.87751 4.93718 5.04692 5.10470 5.12430 5.16602 5.18609 5.19382 5.20348 5.24663 5.27214 5.31092 5.41991 5.50471 5.53431 5.57996 5.62988 5.63992 5.65955 5.97689 6.12612 6.38675 6.51624 6.87687 7.16715 7.46511 8.95519 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.018614 B = 0.004226 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.887658 B = 6624.588803 C = 7372.183526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.092 3.908 12 N -0.599 5.599 13 C 0.514 3.486 14 O -0.591 6.591 15 C -0.060 4.060 16 C -0.117 4.117 17 C -0.080 4.080 18 C -0.109 4.109 19 C -0.082 4.082 20 C -0.106 4.106 21 C -0.082 4.082 22 C -0.105 4.105 23 C -0.082 4.082 24 C -0.117 4.117 25 C 0.115 3.885 26 C -0.112 4.112 27 H 0.262 0.738 28 H 0.002 0.998 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.048 0.952 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 -11.555 12.109 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.150 4.150 11 C -0.029 4.029 12 N -0.330 5.330 13 C 0.304 3.696 14 O -0.473 6.473 15 C -0.063 4.063 16 C -0.155 4.155 17 C -0.098 4.098 18 C -0.147 4.147 19 C -0.100 4.100 20 C -0.143 4.143 21 C -0.100 4.100 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.155 4.155 25 C -0.008 4.008 26 C -0.150 4.150 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.471 -11.920 11.986 18.908 hybrid contribution 1.107 1.162 -0.715 1.757 sum -7.364 -10.758 11.272 17.234 Atomic orbital electron populations 1.69949 1.06728 1.27081 1.51181 1.25590 0.95676 1.01772 0.94776 0.85677 0.78963 0.80340 0.77681 1.19874 1.20670 1.20439 1.21543 0.92816 0.92235 1.50672 0.93656 1.18600 0.92996 0.91822 0.93821 1.21785 0.99290 0.95976 0.97967 1.22605 0.91414 0.85541 1.03330 1.48224 1.35682 1.21391 1.27718 1.21303 0.82919 0.81170 0.84223 1.90588 1.45293 1.34363 1.77011 1.20618 0.95366 0.98534 0.91814 1.21959 0.91589 1.02886 0.99026 1.21059 0.99014 0.95704 0.94015 1.21595 0.95338 0.97422 1.00307 1.21054 0.95186 0.98922 0.94863 1.21558 1.01514 0.93359 0.97889 1.21081 0.95087 0.98856 0.94990 1.21556 0.95453 0.97169 1.00028 1.21285 0.99465 0.95045 0.96258 1.21914 0.99637 0.96320 0.97607 1.21579 0.92030 0.98171 0.89004 1.21846 0.98325 0.94382 1.00491 0.92864 0.97962 0.95175 0.90058 0.92069 0.85990 0.90294 0.91935 0.89241 0.89700 0.92090 0.90346 0.89787 0.92627 0.89824 0.91896 0.89826 0.92550 0.93371 0.93322 0.90558 0.91426 0.90546 0.91909 0.94110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.62 11.31 21.45 0.24 -49.37 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -28.85 8.56 25.60 0.22 -28.63 16 8 H 0.05 2.47 7.74 -2.91 -0.02 2.44 16 9 C 0.05 2.23 2.06 -11.51 -0.02 2.21 16 10 C -0.11 -4.89 4.82 30.67 0.15 -4.74 16 11 C 0.09 3.25 4.22 86.36 0.36 3.61 16 12 N -0.60 -21.86 2.97 -818.91 -2.43 -24.29 16 13 C 0.51 18.42 6.48 87.66 0.57 18.98 16 14 O -0.59 -24.73 15.42 -3.03 -0.05 -24.78 16 15 C -0.06 -1.66 0.49 -52.93 -0.03 -1.69 16 16 C -0.12 -2.72 4.14 30.60 0.13 -2.60 16 17 C -0.08 -1.37 3.19 -10.79 -0.03 -1.41 16 18 C -0.11 -1.88 5.19 30.60 0.16 -1.72 16 19 C -0.08 -1.63 3.19 -10.79 -0.03 -1.67 16 20 C -0.11 -1.83 5.19 30.59 0.16 -1.67 16 21 C -0.08 -1.48 3.19 -10.81 -0.03 -1.51 16 22 C -0.10 -1.61 5.19 30.59 0.16 -1.45 16 23 C -0.08 -2.10 3.76 30.58 0.11 -1.99 16 24 C -0.12 -3.14 4.15 30.59 0.13 -3.01 16 25 C 0.11 4.35 6.42 86.36 0.55 4.91 16 26 C -0.11 -4.74 5.30 30.67 0.16 -4.58 16 27 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 28 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.03 1.34 7.69 -2.39 -0.02 1.32 16 30 H 0.08 3.97 6.04 -2.39 -0.01 3.95 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.12 3.68 2.44 -2.39 -0.01 3.68 16 33 H 0.08 1.93 4.70 -2.39 -0.01 1.92 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 1.53 8.08 -2.39 -0.02 1.51 16 45 H 0.05 1.38 8.12 -2.38 -0.02 1.36 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 2.26 4.07 -2.39 -0.01 2.25 16 48 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.08 2.92 7.04 -2.39 -0.02 2.90 16 50 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 51 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.49 355.91 3.85 -57.64 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.90 Total: 21.56 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.16 Total: -25.38 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -2.19 Total: -73.66 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -61.49 3.85 -57.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336378351.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.800 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds