Wall clock time and date at job start Tue Mar 31 2020 12:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99683 * 2 1 4 4 C 1.53006 * 109.46788 * 125.00020 * 3 2 1 5 5 C 1.52998 * 109.47146 * 60.00150 * 4 3 2 6 6 C 1.52998 * 109.47160 * 299.99937 * 4 3 2 7 7 C 1.53006 * 109.46923 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 4 3 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 8 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08009 * 119.99810 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00487 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47070 * 5.00516 * 3 2 1 31 31 H 1.08995 * 109.47493 * 245.00087 * 3 2 1 32 32 H 1.08994 * 109.47050 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47033 * 300.00185 * 5 4 3 34 34 H 1.09005 * 109.46892 * 60.00010 * 5 4 3 35 35 H 1.09004 * 109.47586 * 300.00047 * 6 4 3 36 36 H 1.08998 * 109.47259 * 60.00569 * 6 4 3 37 37 H 1.09006 * 109.47149 * 180.02562 * 6 4 3 38 38 H 1.08996 * 109.47046 * 59.99725 * 7 4 3 39 39 H 1.09006 * 109.46798 * 299.99994 * 7 4 3 40 40 H 1.00901 * 111.00271 * 303.95429 * 8 7 4 41 41 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 43 43 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 44 44 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 45 45 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 46 46 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 47 47 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 48 48 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 49 49 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 50 50 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 51 51 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 4.0245 0.1730 1.0559 6 6 2.2520 1.1962 2.4890 7 6 3.7995 2.6584 1.1821 8 7 4.7327 2.6851 2.3163 9 6 5.4864 3.9455 2.3484 10 6 6.4307 3.9364 3.5228 11 6 6.0136 4.4224 4.7484 12 6 6.8777 4.4159 5.8276 13 6 8.1584 3.9175 5.6855 14 6 8.5809 3.4343 4.4559 15 8 9.8421 2.9488 4.3122 16 6 10.6817 2.9718 5.4683 17 6 12.0517 2.3892 5.1152 18 6 12.9370 2.4128 6.3345 19 1 12.5601 2.8038 7.2680 20 6 14.2278 1.9343 6.2587 21 7 14.6867 1.4576 5.1220 22 14 15.3255 1.9642 7.7699 23 1 14.7051 1.1535 8.8483 24 1 16.6546 1.3976 7.4276 25 1 15.4888 3.3649 8.2353 26 6 7.7119 3.4422 3.3742 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3584 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 4.7169 0.1932 1.8975 33 1 3.4796 -0.7710 1.0558 34 1 4.5823 0.2706 0.1245 35 1 1.5470 2.0227 2.5787 36 1 1.7071 0.2522 2.4890 37 1 2.9442 1.2165 3.3309 38 1 3.0943 3.4846 1.2719 39 1 4.3573 2.7564 0.2507 40 1 4.2476 2.5312 3.1875 41 1 4.7931 4.7810 2.4466 42 1 6.0555 4.0523 1.4249 43 1 5.0111 4.8076 4.8629 44 1 6.5497 4.7963 6.7837 45 1 8.8316 3.9083 6.5301 46 1 10.8009 3.9998 5.8104 47 1 10.2269 2.3758 6.2596 48 1 11.9322 1.3611 4.7733 49 1 12.5068 2.9846 4.3238 50 1 15.5947 1.1206 5.0687 51 1 8.0372 3.0629 2.4168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339415501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:49 Heat of formation + Delta-G solvation = -21.549035 kcal Electronic energy + Delta-G solvation = -25358.908419 eV Core-core repulsion = 21836.887357 eV Total energy + Delta-G solvation = -3522.021062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.83510 -38.96456 -37.42097 -35.37871 -33.38641 -33.05185 -30.99134 -30.54378 -29.12433 -27.56867 -27.11047 -26.46846 -25.00951 -23.86227 -22.33359 -21.59422 -20.38364 -20.13414 -18.88371 -17.60448 -16.37541 -16.08051 -15.87304 -15.64787 -15.50609 -15.31764 -15.21747 -14.71745 -14.48656 -14.25836 -13.75646 -13.63328 -13.29243 -13.18748 -12.92297 -12.58043 -12.39273 -12.28807 -12.22284 -11.88875 -11.86868 -11.67771 -11.43189 -11.37471 -11.24809 -11.07768 -10.91027 -10.85488 -10.75863 -10.60562 -10.39924 -9.84490 -9.64916 -9.61828 -9.30277 -8.77015 -8.54458 -8.43608 -7.82548 -6.09286 -4.14075 1.46161 1.69171 1.95333 3.29253 3.33610 3.35356 3.76589 3.86749 4.19168 4.41545 4.43107 4.50677 4.64422 4.82810 4.82909 4.92399 4.97937 5.12423 5.15490 5.26917 5.27941 5.29681 5.37277 5.43161 5.45056 5.48660 5.53870 5.55094 5.58965 5.72114 5.76104 5.80844 5.87312 5.92988 6.04915 6.07068 6.07923 6.20810 6.23569 6.33908 6.44708 6.56099 6.58834 6.69118 6.74298 6.77284 7.01191 7.17703 7.51936 7.65455 7.82550 8.08456 8.24927 8.91252 9.50086 11.02188 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.001886 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.055596 B =14841.580355 C =15607.160008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.086 4.086 4 C -0.057 4.057 5 C -0.135 4.135 6 C -0.144 4.144 7 C 0.068 3.932 8 N -0.680 5.680 9 C 0.103 3.897 10 C -0.051 4.051 11 C -0.167 4.167 12 C -0.081 4.081 13 C -0.211 4.211 14 C 0.145 3.855 15 O -0.315 6.315 16 C 0.065 3.935 17 C 0.025 3.975 18 C -0.528 4.528 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.138 4.138 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.343 0.657 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.129 0.871 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.028 0.972 50 H 0.264 0.736 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.237 2.466 -8.042 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.161 4.161 3 C -0.123 4.123 4 C -0.058 4.058 5 C -0.192 4.192 6 C -0.202 4.202 7 C -0.061 4.061 8 N -0.312 5.312 9 C -0.026 4.026 10 C -0.052 4.052 11 C -0.186 4.186 12 C -0.099 4.099 13 C -0.230 4.230 14 C 0.098 3.902 15 O -0.228 6.228 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.527 5.527 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.157 4.157 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.147 0.853 46 H 0.068 0.932 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.046 0.954 50 H 0.073 0.927 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -27.465 1.965 -8.638 28.858 hybrid contribution -0.028 0.660 1.410 1.557 sum -27.493 2.624 -7.227 28.548 Atomic orbital electron populations 1.23821 0.95996 1.01624 1.02475 1.22953 0.95824 0.98666 0.98621 1.20824 0.97772 0.95383 0.98338 1.20521 0.94726 0.95648 0.94883 1.21801 0.98471 0.96174 1.02768 1.21910 0.99657 1.01769 0.96823 1.22018 0.93545 0.95563 0.94978 1.60494 1.29679 1.34464 1.06605 1.20828 0.94674 0.90277 0.96807 1.19382 0.93613 0.97747 0.94410 1.20760 0.99674 1.05214 0.92967 1.20836 0.93056 0.97671 0.98322 1.21388 0.98213 1.05841 0.97574 1.19208 0.85554 0.92082 0.93397 1.86178 1.20102 1.76832 1.39715 1.23322 0.92056 1.00205 0.85283 1.19119 0.87029 0.97100 0.97936 1.20937 0.97357 1.42386 0.95906 0.92431 1.24989 0.97928 0.94972 0.96275 1.69971 1.16987 1.40801 1.24949 0.86543 0.79583 0.78439 0.82776 1.20108 1.21110 1.20104 1.20259 0.92639 1.04500 0.98339 0.88725 0.88848 0.87217 0.91721 0.90853 0.91089 0.93269 0.92926 0.93196 0.92265 0.92172 0.95438 0.90853 0.83781 0.94489 0.90082 0.86884 0.86285 0.85303 0.93181 0.93161 0.95372 0.95397 0.92658 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 14.32 29.01 0.42 -0.82 16 2 C -0.14 -0.93 7.65 -36.03 -0.28 -1.20 16 3 C -0.09 -0.55 4.73 -27.88 -0.13 -0.68 16 4 C -0.06 -0.41 0.62 -154.50 -0.10 -0.50 16 5 C -0.13 -1.11 8.06 37.16 0.30 -0.81 16 6 C -0.14 -1.01 7.90 37.16 0.29 -0.72 16 7 C 0.07 0.52 4.65 -3.82 -0.02 0.51 16 8 N -0.68 -6.32 5.70 -115.06 -0.66 -6.97 16 9 C 0.10 1.02 5.81 -4.98 -0.03 0.99 16 10 C -0.05 -0.64 5.39 -104.65 -0.56 -1.21 16 11 C -0.17 -2.00 9.70 -39.56 -0.38 -2.39 16 12 C -0.08 -1.05 10.04 -39.61 -0.40 -1.45 16 13 C -0.21 -3.33 9.04 -39.44 -0.36 -3.69 16 14 C 0.14 2.56 6.69 -39.22 -0.26 2.30 16 15 O -0.32 -6.61 10.14 -19.43 -0.20 -6.80 16 16 C 0.07 1.42 4.68 37.16 0.17 1.59 16 17 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 18 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 22 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.14 -2.13 9.64 -39.43 -0.38 -2.51 16 27 H 0.09 0.51 8.06 -52.48 -0.42 0.09 16 28 H 0.09 0.53 7.84 -52.49 -0.41 0.12 16 29 H 0.11 0.70 6.81 -52.49 -0.36 0.35 16 30 H 0.06 0.39 7.79 -51.93 -0.40 -0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.70 7.60 -51.93 -0.39 0.31 16 33 H 0.05 0.37 6.53 -51.93 -0.34 0.03 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.42 7.22 -51.93 -0.37 0.05 16 37 H 0.06 0.45 6.57 -51.93 -0.34 0.11 16 38 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.34 3.09 6.76 -39.29 -0.27 2.83 16 41 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 42 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 45 H 0.13 2.01 6.30 -52.48 -0.33 1.68 16 46 H 0.05 1.03 7.67 -51.93 -0.40 0.64 16 47 H 0.05 1.04 7.65 -51.93 -0.40 0.64 16 48 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 408.98 15.07 6.16 6.16 Total: -1.00 -29.77 408.98 -10.29 -40.06 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.05 Total: 0.62 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: -2.27 Total: -23.57 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.08 Total: -32.79 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.20 Total: -6.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -29.77 -10.29 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339415501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.511 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds