Wall clock time and date at job start Tue Mar 31 2020 12:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99683 * 2 1 4 4 C 1.53006 * 109.46788 * 125.00020 * 3 2 1 5 5 C 1.52998 * 109.47146 * 60.00150 * 4 3 2 6 6 C 1.52998 * 109.47160 * 299.99937 * 4 3 2 7 7 C 1.53006 * 109.46923 * 180.02562 * 4 3 2 8 8 N 1.46900 * 109.47078 * 180.02562 * 7 4 3 9 9 C 1.46896 * 111.00195 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.47382 * 179.97438 * 9 8 7 11 11 C 1.38280 * 119.97205 * 270.02476 * 10 9 8 12 12 C 1.38250 * 120.10833 * 180.02562 * 11 10 9 13 13 C 1.38159 * 120.05742 * 359.68104 * 12 11 10 14 14 C 1.38710 * 119.94311 * 0.57011 * 13 12 11 15 15 O 1.35900 * 120.05544 * 179.72143 * 14 13 12 16 16 C 1.42898 * 117.00172 * 359.72769 * 15 14 13 17 17 C 1.52997 * 109.47319 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46756 * 59.99920 * 22 20 18 24 24 H 1.48490 * 109.47381 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47117 * 300.00527 * 22 20 18 26 26 C 1.38129 * 119.97079 * 90.00085 * 10 9 8 27 27 H 1.08009 * 119.99810 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.00487 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00487 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47070 * 5.00516 * 3 2 1 31 31 H 1.08995 * 109.47493 * 245.00087 * 3 2 1 32 32 H 1.08994 * 109.47050 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47033 * 300.00185 * 5 4 3 34 34 H 1.09005 * 109.46892 * 60.00010 * 5 4 3 35 35 H 1.09004 * 109.47586 * 300.00047 * 6 4 3 36 36 H 1.08998 * 109.47259 * 60.00569 * 6 4 3 37 37 H 1.09006 * 109.47149 * 180.02562 * 6 4 3 38 38 H 1.08996 * 109.47046 * 59.99725 * 7 4 3 39 39 H 1.09006 * 109.46798 * 299.99994 * 7 4 3 40 40 H 1.00901 * 111.00271 * 303.95429 * 8 7 4 41 41 H 1.09005 * 109.46944 * 59.99947 * 9 8 7 42 42 H 1.09002 * 109.47398 * 300.00389 * 9 8 7 43 43 H 1.08000 * 119.95034 * 0.02562 * 11 10 9 44 44 H 1.08006 * 119.97154 * 179.97438 * 12 11 10 45 45 H 1.08006 * 120.03137 * 180.29323 * 13 12 11 46 46 H 1.09002 * 109.47259 * 300.00149 * 16 15 14 47 47 H 1.09001 * 109.47074 * 60.00171 * 16 15 14 48 48 H 1.09002 * 109.47153 * 300.00307 * 17 16 15 49 49 H 1.08998 * 109.47533 * 59.99936 * 17 16 15 50 50 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 51 51 H 1.07998 * 120.02418 * 0.02613 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 4.0245 0.1730 1.0559 6 6 2.2520 1.1962 2.4890 7 6 3.7995 2.6584 1.1821 8 7 4.7327 2.6851 2.3163 9 6 5.4864 3.9455 2.3484 10 6 6.4307 3.9364 3.5228 11 6 6.0136 4.4224 4.7484 12 6 6.8777 4.4159 5.8276 13 6 8.1584 3.9175 5.6855 14 6 8.5809 3.4343 4.4559 15 8 9.8421 2.9488 4.3122 16 6 10.6817 2.9718 5.4683 17 6 12.0517 2.3892 5.1152 18 6 12.9370 2.4128 6.3345 19 1 12.5601 2.8038 7.2680 20 6 14.2278 1.9343 6.2587 21 7 14.6867 1.4576 5.1220 22 14 15.3255 1.9642 7.7699 23 1 14.7051 1.1535 8.8483 24 1 16.6546 1.3976 7.4276 25 1 15.4888 3.3649 8.2353 26 6 7.7119 3.4422 3.3742 27 1 -0.5400 -0.9354 -0.0004 28 1 -0.5401 0.9352 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3584 2.1316 0.0897 31 1 2.6212 1.4027 -0.9313 32 1 4.7169 0.1932 1.8975 33 1 3.4796 -0.7710 1.0558 34 1 4.5823 0.2706 0.1245 35 1 1.5470 2.0227 2.5787 36 1 1.7071 0.2522 2.4890 37 1 2.9442 1.2165 3.3309 38 1 3.0943 3.4846 1.2719 39 1 4.3573 2.7564 0.2507 40 1 4.2476 2.5312 3.1875 41 1 4.7931 4.7810 2.4466 42 1 6.0555 4.0523 1.4249 43 1 5.0111 4.8076 4.8629 44 1 6.5497 4.7963 6.7837 45 1 8.8316 3.9083 6.5301 46 1 10.8009 3.9998 5.8104 47 1 10.2269 2.3758 6.2596 48 1 11.9322 1.3611 4.7733 49 1 12.5068 2.9846 4.3238 50 1 15.5947 1.1206 5.0687 51 1 8.0372 3.0629 2.4168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339415501.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:48 Heat of formation + Delta-G solvation = -36.446682 kcal Electronic energy + Delta-G solvation = -25359.554429 eV Core-core repulsion = 21836.887357 eV Total energy + Delta-G solvation = -3522.667072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.07855 -39.65995 -38.65090 -36.15704 -35.44816 -33.72233 -32.58361 -31.71951 -30.53145 -28.14623 -27.72169 -27.38298 -26.80504 -24.73200 -23.51438 -23.23350 -21.55728 -20.85406 -19.50374 -19.05199 -18.14026 -17.13009 -16.94291 -16.88178 -16.64475 -16.45870 -16.36882 -15.87560 -15.40122 -15.05086 -14.60009 -14.44671 -14.37504 -14.32490 -14.12663 -14.03878 -13.71689 -13.41624 -12.99390 -12.95428 -12.88107 -12.59692 -12.56954 -12.51028 -12.45523 -12.38047 -12.18860 -11.86657 -11.66689 -11.59852 -11.57579 -11.48294 -11.39488 -11.17908 -10.61848 -10.10898 -9.81358 -9.29231 -9.06847 -8.26752 -6.40945 0.36015 0.54577 1.40627 1.44846 1.47449 1.52896 2.27580 2.51853 2.77313 3.07362 3.40717 3.83394 3.86033 3.93108 3.96918 4.07838 4.16339 4.24281 4.25996 4.29903 4.35403 4.41284 4.43688 4.56633 4.57625 4.68964 4.72736 4.74998 4.76733 4.89070 4.91985 4.93639 4.99137 5.09841 5.12213 5.15642 5.23377 5.30894 5.32763 5.45395 5.45785 5.49482 5.53235 5.58417 5.62516 5.68520 5.82978 5.91014 5.96540 6.06791 6.11675 6.49719 6.58537 6.73516 7.29181 8.86128 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.001886 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.055596 B =14841.580355 C =15607.160008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C -0.081 4.081 4 C -0.052 4.052 5 C -0.132 4.132 6 C -0.140 4.140 7 C 0.071 3.929 8 N -0.691 5.691 9 C 0.107 3.893 10 C -0.044 4.044 11 C -0.153 4.153 12 C -0.078 4.078 13 C -0.223 4.223 14 C 0.105 3.895 15 O -0.343 6.343 16 C 0.086 3.914 17 C 0.028 3.972 18 C -0.549 4.549 19 H 0.071 0.929 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.263 1.263 26 C -0.152 4.152 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.345 0.655 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.150 0.850 44 H 0.151 0.849 45 H 0.125 0.875 46 H 0.059 0.941 47 H 0.058 0.942 48 H -0.003 1.003 49 H -0.002 1.002 50 H 0.267 0.733 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.786 3.794 -6.646 31.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.171 4.171 3 C -0.119 4.119 4 C -0.053 4.053 5 C -0.189 4.189 6 C -0.198 4.198 7 C -0.057 4.057 8 N -0.324 5.324 9 C -0.021 4.021 10 C -0.045 4.045 11 C -0.171 4.171 12 C -0.096 4.096 13 C -0.242 4.242 14 C 0.059 3.941 15 O -0.258 6.258 16 C 0.011 3.989 17 C -0.009 4.009 18 C -0.586 4.586 19 H 0.089 0.911 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.800 3.200 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.188 1.188 26 C -0.171 4.171 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.168 0.832 44 H 0.169 0.831 45 H 0.143 0.857 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.016 0.984 49 H 0.016 0.984 50 H 0.076 0.924 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -30.049 3.302 -7.245 31.086 hybrid contribution 0.596 0.251 0.881 1.093 sum -29.453 3.553 -6.364 30.341 Atomic orbital electron populations 1.23955 0.95919 1.02237 1.01638 1.22980 0.96081 0.98644 0.99394 1.20781 0.97630 0.95611 0.97868 1.20468 0.94514 0.94806 0.95485 1.21760 0.98430 0.97165 1.01589 1.21866 0.99553 1.01990 0.96357 1.22010 0.93412 0.96175 0.94139 1.60442 1.30422 1.34281 1.07266 1.20799 0.94545 0.91356 0.95422 1.19695 0.92670 0.96186 0.95927 1.21207 1.00924 1.03094 0.91905 1.21216 0.91769 0.96452 1.00122 1.21495 0.99679 1.06482 0.96586 1.19542 0.84582 0.94627 0.95319 1.86084 1.22004 1.78413 1.39265 1.22839 0.90042 1.00308 0.85679 1.18964 0.89952 0.95066 0.96944 1.21373 0.98064 1.42530 0.96660 0.91090 1.26060 0.99648 0.94187 0.99812 1.70123 1.17584 1.41674 1.27562 0.85319 0.77138 0.79107 0.78389 1.18844 1.20727 1.18786 1.20396 0.93774 1.05373 0.97550 0.88195 0.88224 0.87531 0.90961 0.90860 0.93003 0.92851 0.93444 0.92339 0.92529 0.92745 0.94142 0.91253 0.83454 0.92218 0.90406 0.83182 0.83149 0.85667 0.92237 0.92338 0.98429 0.98356 0.92435 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 14.32 67.78 0.97 -1.15 16 2 C -0.15 -1.79 7.65 25.64 0.20 -1.59 16 3 C -0.08 -0.90 4.73 29.85 0.14 -0.76 16 4 C -0.05 -0.67 0.62 -52.18 -0.03 -0.70 16 5 C -0.13 -2.14 8.06 71.98 0.58 -1.56 16 6 C -0.14 -1.72 7.90 71.98 0.57 -1.16 16 7 C 0.07 0.96 4.65 86.31 0.40 1.36 16 8 N -0.69 -11.62 5.70 -517.93 -2.95 -14.58 16 9 C 0.11 1.88 5.81 85.56 0.50 2.38 16 10 C -0.04 -1.04 5.39 -19.88 -0.11 -1.14 16 11 C -0.15 -3.13 9.70 22.28 0.22 -2.92 16 12 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 13 C -0.22 -6.94 9.04 22.36 0.20 -6.74 16 14 C 0.10 3.80 6.69 22.50 0.15 3.96 16 15 O -0.34 -15.22 10.14 -92.43 -0.94 -16.15 16 16 C 0.09 3.88 4.68 71.98 0.34 4.22 16 17 C 0.03 1.57 5.34 29.85 0.16 1.73 16 18 C -0.55 -31.47 9.11 25.60 0.23 -31.23 16 19 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 20 C 0.00 0.09 5.46 84.65 0.46 0.55 16 21 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 22 Si 0.98 43.84 29.54 68.60 2.03 45.86 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 26 C -0.15 -4.74 9.64 22.37 0.22 -4.53 16 27 H 0.10 0.93 8.06 -2.91 -0.02 0.91 16 28 H 0.10 0.92 7.84 -2.91 -0.02 0.90 16 29 H 0.11 1.29 6.81 -2.91 -0.02 1.27 16 30 H 0.07 0.71 7.79 -2.38 -0.02 0.69 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 1.04 7.60 -2.39 -0.02 1.02 16 33 H 0.05 0.80 6.53 -2.39 -0.02 0.78 16 34 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.06 0.73 7.22 -2.39 -0.02 0.71 16 37 H 0.05 0.73 6.57 -2.38 -0.02 0.71 16 38 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.35 5.45 6.76 -89.69 -0.61 4.84 16 41 H 0.06 0.81 8.08 -2.38 -0.02 0.79 16 42 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 45 H 0.13 3.88 6.30 -2.91 -0.02 3.86 16 46 H 0.06 2.53 7.67 -2.39 -0.02 2.51 16 47 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 48 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 49 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 50 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -66.77 408.98 4.11 -62.67 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.27 Total: 20.08 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 5.41 Total: -40.89 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -2.67 Total: -71.56 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.94 Total: -16.15 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -66.77 4.11 -62.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339415501.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.219 kcal (2) G-P(sol) polarization free energy of solvation -66.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds