Wall clock time and date at job start Tue Mar 31 2020 12:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46932 * 2 1 4 4 C 1.52995 * 109.47025 * 120.00315 * 2 1 3 5 5 C 1.53008 * 109.50268 * 60.08034 * 4 2 1 6 6 O 1.42894 * 109.47368 * 54.88973 * 5 4 2 7 7 C 1.53113 * 109.50676 * 300.00166 * 4 2 1 8 8 C 1.53119 * 109.16175 * 182.36678 * 7 4 2 9 9 C 1.53038 * 109.31075 * 57.63455 * 8 7 4 10 10 N 1.46852 * 109.51863 * 300.87860 * 9 8 7 11 11 C 1.46907 * 110.99300 * 185.80462 * 10 9 8 12 12 C 1.50697 * 109.47467 * 65.75066 * 11 10 9 13 13 C 1.38635 * 119.74712 * 269.73008 * 12 11 10 14 14 C 1.37614 * 120.24719 * 179.72299 * 13 12 11 15 15 C 1.40714 * 119.74471 * 0.52136 * 14 13 12 16 16 C 1.41392 * 120.24732 * 179.72781 * 15 14 13 17 17 H 1.08005 * 120.00148 * 27.54836 * 16 15 14 18 18 C 1.39951 * 120.00322 * 207.54984 * 16 15 14 19 19 N 1.30821 * 119.99841 * 10.44610 * 18 16 15 20 20 Si 1.86804 * 119.99822 * 190.45531 * 18 16 15 21 21 H 1.48496 * 109.47142 * 90.00033 * 20 18 16 22 22 H 1.48505 * 109.46795 * 209.99418 * 20 18 16 23 23 H 1.48493 * 109.47401 * 329.99185 * 20 18 16 24 24 C 1.40716 * 119.51206 * 359.74918 * 15 14 13 25 25 C 1.37616 * 119.74398 * 0.02562 * 24 15 14 26 26 C 1.46843 * 111.23070 * 61.68526 * 10 9 8 27 27 H 1.09009 * 109.47036 * 299.99265 * 1 2 3 28 28 H 1.08995 * 109.47304 * 59.99539 * 1 2 3 29 29 H 1.08999 * 109.47453 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46851 * 240.00355 * 2 1 3 31 31 H 1.09002 * 109.46618 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47502 * 300.00339 * 3 2 1 33 33 H 1.09009 * 109.46660 * 60.00504 * 3 2 1 34 34 H 1.09000 * 109.47096 * 174.88897 * 5 4 2 35 35 H 1.09000 * 109.46524 * 294.88642 * 5 4 2 36 36 H 0.96696 * 113.99970 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.52647 * 62.45894 * 7 4 2 38 38 H 1.09004 * 109.57101 * 302.30109 * 7 4 2 39 39 H 1.09001 * 109.50393 * 177.58760 * 8 7 4 40 40 H 1.08994 * 109.50430 * 297.67224 * 8 7 4 41 41 H 1.08994 * 109.46720 * 60.85490 * 9 8 7 42 42 H 1.09001 * 109.46065 * 180.82485 * 9 8 7 43 43 H 1.09005 * 109.46786 * 185.75426 * 11 10 9 44 44 H 1.08998 * 109.46755 * 305.74549 * 11 10 9 45 45 H 1.07998 * 119.87634 * 359.97430 * 13 12 11 46 46 H 1.08003 * 120.13017 * 180.27503 * 14 13 12 47 47 H 0.96995 * 119.99726 * 180.02562 * 19 18 16 48 48 H 1.07997 * 120.12776 * 179.97438 * 24 15 14 49 49 H 1.08002 * 119.87943 * 179.97438 * 25 24 15 50 50 H 1.08999 * 109.45984 * 178.25724 * 26 10 9 51 51 H 1.09003 * 109.46196 * 58.29426 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5320 -2.1646 1.2488 6 8 1.9093 -2.8021 0.0269 7 6 1.5300 -0.0002 2.4999 8 6 2.0929 -0.6929 3.7440 9 6 3.6218 -0.6916 3.6759 10 7 4.0595 -1.3927 2.4621 11 6 5.5217 -1.5313 2.4327 12 6 5.9634 -2.4347 3.5552 13 6 6.2754 -1.8924 4.7923 14 6 6.6744 -2.7084 5.8261 15 6 6.7756 -4.0967 5.6206 16 6 7.1900 -4.9443 6.6737 17 1 7.0091 -4.6590 7.6995 18 6 7.8346 -6.1530 6.3869 19 7 8.2369 -6.4066 5.1681 20 14 8.1204 -7.4041 7.7442 21 1 6.9598 -8.3274 7.8188 22 1 9.3521 -8.1801 7.4508 23 1 8.2768 -6.6996 9.0420 24 6 6.4618 -4.6354 4.3590 25 6 6.0604 -3.8009 3.3410 26 6 3.5703 -0.7184 1.2529 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.9685 -2.7036 2.0897 35 1 0.4458 -2.1674 1.3398 36 1 1.6193 -3.7219 -0.0427 37 1 0.4410 -0.0378 2.5235 38 1 1.8584 1.0390 2.4817 39 1 1.7680 -0.1583 4.6366 40 1 1.7313 -1.7204 3.7834 41 1 3.9833 0.3364 3.6512 42 1 4.0248 -1.1972 4.5535 43 1 5.8268 -1.9614 1.4787 44 1 5.9820 -0.5507 2.5529 45 1 6.2012 -0.8261 4.9465 46 1 6.9128 -2.2844 6.7904 47 1 8.6833 -7.2444 4.9693 48 1 6.5364 -5.6995 4.1902 49 1 5.8194 -4.2119 2.3718 50 1 3.9367 -1.2436 0.3708 51 1 3.9316 0.3099 1.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339706025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:20 Heat of formation + Delta-G solvation = -47.479770 kcal Electronic energy + Delta-G solvation = -27720.292203 eV Core-core repulsion = 24197.146700 eV Total energy + Delta-G solvation = -3523.145503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.21211 -37.79280 -36.28007 -35.38566 -33.73942 -32.54272 -30.32178 -29.75289 -29.12922 -27.80761 -26.68883 -25.40661 -24.19325 -22.73478 -22.55555 -20.93194 -20.47690 -19.55030 -17.92343 -17.24570 -17.10139 -15.90895 -15.30852 -15.06540 -14.99247 -14.97508 -14.28495 -14.14526 -13.82380 -13.61109 -13.31585 -13.19498 -12.86114 -12.76938 -12.52836 -12.44145 -12.31451 -11.94603 -11.86487 -11.60935 -11.51607 -11.35334 -11.17202 -11.10024 -11.02414 -10.85995 -10.65168 -10.48327 -10.31387 -10.15880 -10.06810 -9.91673 -9.62294 -9.49318 -9.28470 -9.16124 -7.80474 -7.39041 -7.19378 -6.65842 -4.32753 2.77832 3.08902 3.11244 3.12590 3.20116 3.96745 4.21437 4.45914 4.66983 4.71366 4.78055 4.92743 5.09507 5.11350 5.26249 5.36847 5.48624 5.51640 5.60452 5.66181 5.68315 5.73428 5.75276 5.79548 5.84855 5.85920 5.90785 5.95282 5.96822 6.06241 6.08930 6.19211 6.25347 6.26860 6.33432 6.39845 6.41506 6.48670 6.49837 6.55700 7.00016 7.12456 7.34698 7.40764 7.56907 7.57864 7.67499 7.78599 7.92675 8.11036 8.19972 8.35594 8.70597 8.95103 9.02635 10.27084 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.002870 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.747091 B = 9753.836433 C =10024.314442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.152 4.152 4 C -0.042 4.042 5 C 0.091 3.909 6 O -0.570 6.570 7 C -0.113 4.113 8 C -0.120 4.120 9 C 0.054 3.946 10 N -0.527 5.527 11 C 0.121 3.879 12 C -0.198 4.198 13 C -0.089 4.089 14 C -0.223 4.223 15 C 0.110 3.890 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.802 5.802 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.161 4.161 25 C -0.082 4.082 26 C 0.068 3.932 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.374 0.626 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.021 0.979 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.020 0.980 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.278 0.722 48 H 0.121 0.879 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.048 9.622 -8.185 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.209 4.209 4 C -0.043 4.043 5 C 0.013 3.987 6 O -0.375 6.375 7 C -0.150 4.150 8 C -0.158 4.158 9 C -0.074 4.074 10 N -0.251 5.251 11 C -0.005 4.005 12 C -0.200 4.200 13 C -0.108 4.108 14 C -0.243 4.243 15 C 0.107 3.893 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.429 5.429 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.180 4.180 25 C -0.101 4.101 26 C -0.060 4.060 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.220 0.780 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.038 0.962 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.139 0.861 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.838 9.575 -8.425 18.096 hybrid contribution 0.355 -0.310 0.714 0.856 sum -12.483 9.265 -7.710 17.352 Atomic orbital electron populations 1.21893 0.95616 1.01632 1.01200 1.21007 0.95366 0.95425 0.98262 1.21985 1.01251 0.96380 1.01322 1.20539 0.95345 0.93773 0.94601 1.22203 0.96395 0.93074 0.87027 1.86408 1.81902 1.29593 1.39586 1.21734 1.00039 0.99264 0.93982 1.21656 0.95807 1.01278 0.97013 1.22118 0.94638 0.95792 0.94848 1.61943 1.12028 1.50183 1.00984 1.20705 0.85411 0.96472 0.97925 1.18880 1.12813 0.93800 0.94498 1.20341 1.00362 0.96651 0.93415 1.20966 1.11558 0.93894 0.97859 1.17631 0.87871 0.90850 0.92936 1.19583 1.33397 1.02087 0.94305 0.90722 1.25881 0.93658 0.98467 0.96336 1.69794 1.29104 1.23689 1.20291 0.86287 0.78359 0.80290 0.81580 1.19409 1.20362 1.18765 1.21415 1.03312 0.99553 0.93732 1.20514 0.99325 0.92750 0.97518 1.22093 0.93644 0.96325 0.93970 0.92772 0.93182 0.92579 0.90366 0.92524 0.93107 0.92639 0.91614 0.94846 0.78022 0.91865 0.91609 0.91941 0.91129 0.96076 0.89327 0.91711 0.96157 0.90003 0.89255 0.91074 0.86134 0.89531 0.90596 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.49 37.16 0.32 -1.01 16 2 C -0.08 -0.85 2.09 -90.62 -0.19 -1.04 16 3 C -0.15 -1.45 8.49 37.16 0.32 -1.14 16 4 C -0.04 -0.49 0.15 -154.43 -0.02 -0.52 16 5 C 0.09 1.09 4.90 37.16 0.18 1.27 16 6 O -0.57 -6.96 12.31 -35.23 -0.43 -7.39 16 7 C -0.11 -1.23 4.07 -26.61 -0.11 -1.34 16 8 C -0.12 -1.50 5.74 -26.65 -0.15 -1.66 16 9 C 0.05 0.82 5.16 -3.83 -0.02 0.80 16 10 N -0.53 -8.46 3.84 -236.11 -0.91 -9.37 16 11 C 0.12 2.18 5.11 -4.97 -0.03 2.16 16 12 C -0.20 -4.27 4.90 -104.33 -0.51 -4.78 16 13 C -0.09 -1.96 7.84 -39.66 -0.31 -2.27 16 14 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 15 C 0.11 2.93 5.57 -106.83 -0.59 2.33 16 16 C -0.46 -12.40 9.07 -37.74 -0.34 -12.74 16 17 H 0.07 1.93 7.87 -52.48 -0.41 1.51 16 18 C 0.07 1.85 5.27 -17.34 -0.09 1.76 16 19 N -0.80 -20.99 10.74 55.55 0.60 -20.40 16 20 Si 0.91 18.94 29.57 -169.99 -5.03 13.92 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 24 C -0.16 -4.19 8.67 -38.87 -0.34 -4.53 16 25 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 26 C 0.07 0.94 3.76 -3.84 -0.01 0.92 16 27 H 0.05 0.46 6.49 -51.92 -0.34 0.13 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 30 H 0.08 0.93 7.56 -51.93 -0.39 0.54 16 31 H 0.06 0.57 6.41 -51.93 -0.33 0.24 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.51 6.38 -51.92 -0.33 0.18 16 34 H 0.07 0.93 6.13 -51.93 -0.32 0.61 16 35 H 0.03 0.36 6.72 -51.93 -0.35 0.01 16 36 H 0.37 3.20 9.12 45.56 0.42 3.62 16 37 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 38 H 0.07 0.70 6.32 -51.93 -0.33 0.37 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 41 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 1.56 5.76 -51.93 -0.30 1.26 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 45 H 0.08 1.62 7.97 -52.49 -0.42 1.20 16 46 H 0.09 2.08 8.06 -52.48 -0.42 1.66 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 48 H 0.12 3.28 6.11 -52.49 -0.32 2.96 16 49 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 50 H 0.08 1.14 7.69 -51.93 -0.40 0.74 16 51 H 0.03 0.37 6.39 -51.93 -0.33 0.04 16 LS Contribution 376.23 15.07 5.67 5.67 Total: -1.00 -27.70 376.23 -10.46 -38.16 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.69 Total: 9.36 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: -2.67 Total: -29.95 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: -0.31 Total: -29.76 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.43 Total: -7.39 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.70 -10.46 -38.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339706025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.324 kcal (2) G-P(sol) polarization free energy of solvation -27.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds