Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.52999 * 109.46942 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46786 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00159 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00059 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00183 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46975 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46694 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47316 * 89.99700 * 21 19 17 23 23 H 1.48499 * 109.47122 * 210.00207 * 21 19 17 24 24 H 1.48500 * 109.46835 * 329.99639 * 21 19 17 25 25 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 26 26 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 36 36 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 38 38 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 39 39 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 40 40 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 41 41 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 42 42 H 1.08998 * 109.46819 * 299.99260 * 11 10 9 43 43 H 1.09001 * 109.47299 * 59.99492 * 11 10 9 44 44 H 0.97005 * 119.99673 * 0.02562 * 14 12 11 45 45 H 1.08998 * 109.46938 * 299.99799 * 15 14 12 46 46 H 1.09001 * 109.47391 * 60.00161 * 15 14 12 47 47 H 1.08998 * 109.46859 * 299.99524 * 16 15 14 48 48 H 1.09000 * 109.47175 * 60.00273 * 16 15 14 49 49 H 0.97001 * 119.99838 * 179.97438 * 20 19 17 50 50 H 1.07997 * 120.00544 * 179.97438 * 25 8 7 51 51 H 1.08001 * 120.00265 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6174 -8.4849 -2.2059 12 6 1.1193 -9.1952 -3.4366 13 8 1.7397 -8.5826 -4.2798 14 7 0.8797 -10.5113 -3.5999 15 6 1.3680 -11.2019 -4.7961 16 6 0.9636 -12.6763 -4.7345 17 6 1.4666 -13.3869 -5.9647 18 1 2.0190 -12.8413 -6.7154 19 6 1.2206 -14.7331 -6.1322 20 7 0.5475 -15.3972 -5.2182 21 14 1.8434 -15.6137 -7.6573 22 1 3.2046 -16.1480 -7.3993 23 1 0.9270 -16.7336 -7.9911 24 1 1.8933 -14.6595 -8.7941 25 6 0.0702 -3.9140 -1.6725 26 6 0.4357 -2.5819 -1.7275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6055 -0.2617 -2.1370 35 1 3.1264 -0.6442 -1.2952 36 1 3.4283 -2.7789 -0.1837 37 1 2.7728 -5.1500 -0.0768 38 1 0.9463 -6.7488 -0.1305 39 1 -0.5747 -6.3662 -0.9724 40 1 0.5870 -6.5510 -3.1552 41 1 2.1079 -6.9336 -2.3134 42 1 1.0524 -8.9441 -1.3182 43 1 -0.4689 -8.5622 -2.1598 44 1 0.3838 -11.0013 -2.9254 45 1 0.9328 -10.7430 -5.6837 46 1 2.4543 -11.1244 -4.8424 47 1 1.3986 -13.1356 -3.8468 48 1 -0.1227 -12.7535 -4.6885 49 1 0.3741 -16.3443 -5.3362 50 1 -0.8718 -4.2332 -2.0932 51 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342635241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = -69.688705 kcal Electronic energy + Delta-G solvation = -24624.480767 eV Core-core repulsion = 21100.372212 eV Total energy + Delta-G solvation = -3524.108555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95378 -39.21618 -36.94196 -35.07377 -34.50803 -32.83606 -31.72953 -31.12426 -29.78064 -28.24104 -27.54680 -25.72477 -24.44939 -22.91821 -22.34652 -20.99626 -20.80153 -20.26358 -19.86963 -16.90492 -16.45995 -16.21880 -16.05773 -15.53397 -15.39358 -14.98213 -14.89434 -14.68226 -14.45232 -14.14844 -13.82451 -13.58591 -13.41447 -13.13095 -12.99885 -12.66267 -12.54637 -12.44838 -12.29394 -12.07089 -11.85885 -11.61348 -11.40631 -11.25914 -11.20063 -11.13273 -11.02944 -11.00814 -10.83884 -10.70616 -10.63744 -10.31971 -9.78414 -9.44272 -9.16140 -9.07357 -8.63859 -8.52801 -8.33725 -6.09548 -4.12349 1.14892 1.23657 3.06234 3.29411 3.35436 3.39572 3.51667 3.77057 4.37229 4.42020 4.43697 4.56819 4.62326 4.65064 4.83542 4.90191 4.94845 4.98999 5.13134 5.15649 5.22721 5.24969 5.27561 5.33896 5.34772 5.43236 5.48897 5.51671 5.53646 5.59021 5.61749 5.66705 5.71008 5.86154 5.90054 5.94019 5.96100 6.08091 6.25217 6.30394 6.36223 6.37055 6.43037 6.49837 6.75122 6.84491 6.95838 7.51981 7.61911 7.88827 8.05562 8.28296 8.70529 8.93792 9.52580 11.02064 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.043840 B = 0.001473 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.536819 B =19002.794516 C =19218.896862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.087 4.087 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.080 4.080 9 C -0.082 4.082 10 C -0.096 4.096 11 C -0.142 4.142 12 C 0.502 3.498 13 O -0.553 6.553 14 N -0.725 5.725 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.115 4.115 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.397 0.603 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.022 0.978 48 H 0.022 0.978 49 H 0.262 0.738 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 29.881 15.024 33.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.087 4.087 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.080 4.080 9 C -0.120 4.120 10 C -0.134 4.134 11 C -0.182 4.182 12 C 0.288 3.712 13 O -0.432 6.432 14 N -0.375 5.375 15 C -0.002 4.002 16 C -0.025 4.025 17 C -0.561 4.561 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.133 4.133 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.231 0.769 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.040 0.960 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.777 30.128 14.434 33.416 hybrid contribution 0.042 -0.960 -0.477 1.072 sum -0.735 29.169 13.957 32.344 Atomic orbital electron populations 1.21925 0.95154 1.02257 1.01475 1.21079 0.96159 0.95760 0.97938 1.21858 1.00951 0.95921 1.01811 1.20677 1.01075 0.91276 0.98338 1.19809 0.94796 0.95358 0.98727 1.20993 0.99409 0.93051 0.99985 1.21042 0.96229 0.95841 1.00090 1.19884 0.94649 0.95578 0.97903 1.20667 1.01374 0.91053 0.98873 1.21288 1.02138 0.92646 0.97322 1.21701 1.02681 0.96644 0.97185 1.20647 0.80049 0.82488 0.88010 1.90672 1.41320 1.66262 1.44909 1.46370 1.56970 1.09204 1.24921 1.21702 0.98370 0.94928 0.85156 1.19327 0.97296 0.87796 0.98099 1.21063 1.35587 0.94100 1.05310 0.92271 1.24991 0.95028 0.97538 0.96694 1.69956 1.40070 1.09021 1.34293 0.86514 0.78663 0.79274 0.83125 1.20550 1.21148 1.19730 1.21052 0.99778 0.92960 0.99502 1.21002 0.96314 0.95780 1.00104 0.92048 0.92944 0.92792 0.91169 0.92670 0.92690 0.92648 0.91083 0.91102 0.86380 0.86139 0.90928 0.90926 0.91097 0.91103 0.89122 0.89129 0.76929 0.92684 0.92680 0.95965 0.95951 0.92856 0.86139 0.86344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.76 37.16 0.33 -0.58 16 2 C -0.09 -0.54 2.91 -90.62 -0.26 -0.80 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C -0.08 -0.50 4.84 -27.89 -0.14 -0.64 16 5 C -0.09 -0.73 4.71 -104.63 -0.49 -1.23 16 6 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 7 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16 8 C -0.08 -0.77 5.13 -104.63 -0.54 -1.31 16 9 C -0.08 -0.72 5.34 -27.88 -0.15 -0.87 16 10 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 11 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 12 C 0.50 8.41 7.83 -10.99 -0.09 8.32 16 13 O -0.55 -11.53 15.98 5.56 0.09 -11.44 16 14 N -0.72 -12.64 5.56 -60.29 -0.33 -12.97 16 15 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 16 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 26 C -0.11 -0.99 7.96 -39.58 -0.32 -1.31 16 27 H 0.06 0.42 6.27 -51.93 -0.33 0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.07 0.56 8.09 -51.92 -0.42 0.14 16 39 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.40 5.90 8.47 -40.82 -0.35 5.55 16 45 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.12 0.85 8.04 -52.49 -0.42 0.43 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -32.22 416.18 -11.07 -43.30 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.50 Total: 0.54 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -3.32 Total: -16.68 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.40 Total: -38.42 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.22 -11.07 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342635241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.393 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds