Wall clock time and date at job start Tue Mar 31 2020 12:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00100 * 2 1 3 5 5 C 1.50692 * 109.47279 * 294.99874 * 4 2 1 6 6 C 1.38237 * 120.00003 * 269.72808 * 5 4 2 7 7 C 1.38243 * 119.99821 * 179.76797 * 6 5 4 8 8 C 1.38231 * 120.00097 * 0.48211 * 7 6 5 9 9 C 1.50695 * 120.00366 * 179.76993 * 8 7 6 10 10 C 1.53005 * 109.47270 * 270.02625 * 9 8 7 11 11 C 1.52999 * 109.46942 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46786 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00159 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00059 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00183 * 180.02562 * 14 12 11 16 16 C 1.53009 * 109.46975 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.46694 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99919 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99712 * 180.02562 * 17 16 15 20 20 N 1.31513 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00156 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47316 * 89.99700 * 21 19 17 23 23 H 1.48499 * 109.47122 * 210.00207 * 21 19 17 24 24 H 1.48500 * 109.46835 * 329.99639 * 21 19 17 25 25 C 1.38240 * 120.00131 * 359.78966 * 8 7 6 26 26 C 1.38236 * 120.00003 * 90.00426 * 5 4 2 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 34 34 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 35 35 H 1.09001 * 109.46992 * 174.99449 * 4 2 1 36 36 H 1.07996 * 119.99877 * 359.97438 * 6 5 4 37 37 H 1.07994 * 119.99602 * 180.25387 * 7 6 5 38 38 H 1.09010 * 109.46825 * 30.02030 * 9 8 7 39 39 H 1.09001 * 109.47297 * 150.01918 * 9 8 7 40 40 H 1.09002 * 109.46412 * 299.99446 * 10 9 8 41 41 H 1.08991 * 109.46814 * 59.99228 * 10 9 8 42 42 H 1.08998 * 109.46819 * 299.99260 * 11 10 9 43 43 H 1.09001 * 109.47299 * 59.99492 * 11 10 9 44 44 H 0.97005 * 119.99673 * 0.02562 * 14 12 11 45 45 H 1.08998 * 109.46938 * 299.99799 * 15 14 12 46 46 H 1.09001 * 109.47391 * 60.00161 * 15 14 12 47 47 H 1.08998 * 109.46859 * 299.99524 * 16 15 14 48 48 H 1.09000 * 109.47175 * 60.00273 * 16 15 14 49 49 H 0.97001 * 119.99838 * 179.97438 * 20 19 17 50 50 H 1.07997 * 120.00544 * 179.97438 * 25 8 7 51 51 H 1.08001 * 120.00265 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6415 -2.1732 -1.1889 6 6 2.4841 -3.0974 -0.6001 7 6 2.1163 -4.4287 -0.5405 8 6 0.9103 -4.8373 -1.0786 9 6 0.5116 -6.2893 -1.0183 10 6 1.0217 -7.0106 -2.2675 11 6 0.6174 -8.4849 -2.2059 12 6 1.1193 -9.1952 -3.4366 13 8 1.7397 -8.5826 -4.2798 14 7 0.8797 -10.5113 -3.5999 15 6 1.3680 -11.2019 -4.7961 16 6 0.9636 -12.6763 -4.7345 17 6 1.4666 -13.3869 -5.9647 18 1 2.0190 -12.8413 -6.7154 19 6 1.2206 -14.7331 -6.1322 20 7 0.5475 -15.3972 -5.2182 21 14 1.8434 -15.6137 -7.6573 22 1 3.2046 -16.1480 -7.3993 23 1 0.9270 -16.7336 -7.9911 24 1 1.8933 -14.6595 -8.7941 25 6 0.0702 -3.9140 -1.6725 26 6 0.4357 -2.5819 -1.7275 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6055 -0.2617 -2.1370 35 1 3.1264 -0.6442 -1.2952 36 1 3.4283 -2.7789 -0.1837 37 1 2.7728 -5.1500 -0.0768 38 1 0.9463 -6.7488 -0.1305 39 1 -0.5747 -6.3662 -0.9724 40 1 0.5870 -6.5510 -3.1552 41 1 2.1079 -6.9336 -2.3134 42 1 1.0524 -8.9441 -1.3182 43 1 -0.4689 -8.5622 -2.1598 44 1 0.3838 -11.0013 -2.9254 45 1 0.9328 -10.7430 -5.6837 46 1 2.4543 -11.1244 -4.8424 47 1 1.3986 -13.1356 -3.8468 48 1 -0.1227 -12.7535 -4.6885 49 1 0.3741 -16.3443 -5.3362 50 1 -0.8718 -4.2332 -2.0932 51 1 -0.2208 -1.8605 -2.1912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342635241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:08 Heat of formation + Delta-G solvation = -85.646295 kcal Electronic energy + Delta-G solvation = -24625.172740 eV Core-core repulsion = 21100.372212 eV Total energy + Delta-G solvation = -3524.800528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77932 -40.43515 -37.52943 -36.63877 -35.46335 -34.80846 -32.59106 -31.78064 -31.47153 -29.11986 -27.98809 -26.99380 -25.82412 -23.58444 -23.42696 -22.63587 -21.55335 -21.19581 -20.78786 -18.59873 -17.94836 -17.08361 -16.98614 -16.66081 -16.48005 -16.39234 -15.95843 -15.66966 -15.31768 -15.18663 -14.71588 -14.48653 -14.38647 -14.30852 -14.18751 -13.87287 -13.33536 -13.22574 -13.08804 -13.02365 -12.94937 -12.74844 -12.55994 -12.52285 -12.38918 -12.22803 -12.07364 -11.89245 -11.67852 -11.66309 -11.52649 -11.48337 -11.47252 -11.42985 -10.77360 -10.61119 -9.99073 -9.74705 -9.30881 -8.25044 -6.35619 0.47703 0.56154 1.41191 1.41518 1.53075 1.72191 2.30401 2.47986 2.88325 3.09678 3.77995 3.85676 3.89598 3.93950 4.03923 4.10172 4.19880 4.21483 4.34308 4.40272 4.46904 4.47348 4.51981 4.64940 4.69882 4.73109 4.77629 4.79700 4.83519 4.85087 4.88626 4.91771 4.98496 5.06867 5.08425 5.16189 5.20990 5.29874 5.30664 5.36235 5.43529 5.44087 5.48320 5.51867 5.57583 5.59658 5.78390 5.79315 5.80991 6.15879 6.19804 6.68512 6.77520 7.33874 7.35026 8.86714 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.043840 B = 0.001473 C = 0.001457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.536819 B =19002.794516 C =19218.896862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.091 4.091 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.096 4.096 9 C -0.073 4.073 10 C -0.090 4.090 11 C -0.129 4.129 12 C 0.499 3.501 13 O -0.598 6.598 14 N -0.720 5.720 15 C 0.139 3.861 16 C 0.023 3.977 17 C -0.550 4.550 18 H 0.056 0.944 19 C 0.009 3.991 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.128 4.128 26 C -0.122 4.122 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.412 0.588 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.009 0.991 48 H 0.010 0.990 49 H 0.266 0.734 50 H 0.129 0.871 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 30.558 15.723 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.128 4.128 11 C -0.169 4.169 12 C 0.287 3.713 13 O -0.480 6.480 14 N -0.371 5.371 15 C 0.015 3.985 16 C -0.015 4.015 17 C -0.588 4.588 18 H 0.075 0.925 19 C -0.190 4.190 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.192 1.192 25 C -0.146 4.146 26 C -0.140 4.140 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.248 0.752 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.028 0.972 48 H 0.028 0.972 49 H 0.075 0.925 50 H 0.147 0.853 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.036 30.811 15.166 34.357 hybrid contribution 0.119 -1.119 -0.677 1.314 sum -0.917 29.692 14.489 33.051 Atomic orbital electron populations 1.21909 0.95194 1.01677 1.01902 1.21043 0.96089 0.96241 0.97261 1.21838 1.01167 0.95177 1.02149 1.20695 1.01386 0.90244 0.98818 1.20055 0.94637 0.96273 0.98166 1.21238 1.00091 0.93101 1.00145 1.21265 0.96469 0.96399 1.00356 1.20066 0.94968 0.96183 0.98403 1.20598 1.02278 0.90231 0.97864 1.21199 1.00789 0.92872 0.97941 1.21741 1.04420 0.95747 0.94944 1.21644 0.78794 0.81767 0.89048 1.90655 1.43314 1.67036 1.46960 1.46215 1.57162 1.09766 1.23993 1.21182 0.97463 0.93224 0.86632 1.19136 0.96117 0.89586 0.96626 1.21478 1.36001 0.94941 1.06372 0.92526 1.25847 0.95041 0.98284 0.99813 1.70051 1.40891 1.09497 1.36056 0.85460 0.78344 0.78073 0.79267 1.19731 1.20359 1.19198 1.21278 1.00287 0.93353 0.99651 1.21214 0.96697 0.95951 1.00152 0.93087 0.92554 0.92342 0.91800 0.92293 0.92362 0.92353 0.90733 0.90675 0.85162 0.85322 0.89429 0.89413 0.93106 0.93121 0.86165 0.86168 0.75190 0.93970 0.93941 0.97218 0.97205 0.92502 0.85309 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.76 71.98 0.63 -1.01 16 2 C -0.09 -0.95 2.91 -10.79 -0.03 -0.98 16 3 C -0.15 -1.26 9.19 71.98 0.66 -0.60 16 4 C -0.07 -0.91 4.84 29.84 0.14 -0.76 16 5 C -0.09 -1.48 4.71 -19.87 -0.09 -1.58 16 6 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 7 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 8 C -0.10 -1.77 5.13 -19.87 -0.10 -1.87 16 9 C -0.07 -1.13 5.34 29.85 0.16 -0.97 16 10 C -0.09 -1.92 4.49 30.60 0.14 -1.79 16 11 C -0.13 -2.61 5.70 29.85 0.17 -2.44 16 12 C 0.50 16.30 7.83 87.66 0.69 16.99 16 13 O -0.60 -25.23 15.98 -3.04 -0.05 -25.28 16 14 N -0.72 -24.68 5.56 -463.06 -2.57 -27.25 16 15 C 0.14 6.10 5.61 86.38 0.48 6.58 16 16 C 0.02 1.16 5.09 29.85 0.15 1.31 16 17 C -0.55 -31.04 9.11 25.60 0.23 -30.80 16 18 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 21 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.13 -2.30 9.70 22.27 0.22 -2.08 16 26 C -0.12 -2.05 7.96 22.27 0.18 -1.87 16 27 H 0.05 0.67 6.27 -2.39 -0.01 0.65 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 35 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.13 2.00 8.06 -2.91 -0.02 1.97 16 38 H 0.09 1.11 8.09 -2.38 -0.02 1.09 16 39 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 40 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 41 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.41 11.69 8.47 -92.70 -0.79 10.90 16 45 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 50 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 51 H 0.13 1.77 8.04 -2.91 -0.02 1.75 16 Total: -1.00 -69.87 416.18 4.30 -65.57 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.08 Total: 20.06 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.52 Total: -24.95 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -2.29 Total: -81.21 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -69.87 4.30 -65.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342635241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.075 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds