Wall clock time and date at job start Tue Mar 31 2020 11:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38250 * 120.00300 * 2 1 4 4 C 1.38215 * 120.00345 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99893 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00357 * 179.97438 * 5 4 3 7 7 C 1.38217 * 119.99900 * 359.97438 * 5 4 3 8 8 C 1.50701 * 120.00280 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.47210 * 81.74229 * 8 7 5 10 10 O 1.21286 * 119.99639 * 5.42205 * 9 8 7 11 11 N 1.34774 * 120.00359 * 185.42061 * 9 8 7 12 12 C 1.46500 * 119.99958 * 354.56021 * 11 9 8 13 13 C 1.50704 * 109.47069 * 89.99915 * 12 11 9 14 14 H 1.08005 * 119.99469 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99876 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00172 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99799 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46913 * 89.99803 * 17 15 13 19 19 H 1.48499 * 109.47118 * 209.99786 * 17 15 13 20 20 H 1.48498 * 109.47172 * 330.00080 * 17 15 13 21 21 C 1.46499 * 120.00110 * 174.83972 * 11 9 8 22 22 C 1.52993 * 109.47403 * 90.93387 * 21 11 9 23 23 C 1.52996 * 109.47220 * 64.15739 * 22 21 11 24 24 C 1.52999 * 109.47242 * 184.15926 * 22 21 11 25 25 C 1.53003 * 109.46960 * 304.15979 * 22 21 11 26 26 C 1.38215 * 119.99793 * 180.26750 * 2 1 3 27 27 H 1.09003 * 109.47198 * 90.00242 * 1 2 3 28 28 H 1.09000 * 109.47751 * 210.00322 * 1 2 3 29 29 H 1.08999 * 109.47555 * 330.00352 * 1 2 3 30 30 H 1.07999 * 119.99649 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.00122 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.47122 * 274.48802 * 6 5 4 33 33 H 1.08999 * 109.47215 * 34.48617 * 6 5 4 34 34 H 1.09001 * 109.47368 * 154.48905 * 6 5 4 35 35 H 1.09000 * 109.46794 * 321.75039 * 8 7 5 36 36 H 1.08998 * 109.47767 * 201.74528 * 8 7 5 37 37 H 1.08993 * 109.47192 * 210.00359 * 12 11 9 38 38 H 1.09003 * 109.46693 * 330.00390 * 12 11 9 39 39 H 0.96998 * 119.99695 * 179.97438 * 16 15 13 40 40 H 1.08998 * 109.47087 * 210.94006 * 21 11 9 41 41 H 1.09005 * 109.47212 * 330.93001 * 21 11 9 42 42 H 1.09007 * 109.47071 * 60.00092 * 23 22 21 43 43 H 1.09004 * 109.47343 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.47314 * 300.00205 * 23 22 21 45 45 H 1.08999 * 109.47058 * 59.99882 * 24 22 21 46 46 H 1.09004 * 109.47241 * 180.02562 * 24 22 21 47 47 H 1.09007 * 109.47011 * 299.99884 * 24 22 21 48 48 H 1.08995 * 109.47525 * 65.08438 * 25 22 21 49 49 H 1.09007 * 109.46939 * 185.08005 * 25 22 21 50 50 H 1.09001 * 109.47308 * 305.07545 * 25 22 21 51 51 H 1.08001 * 119.99931 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7786 -0.0002 -0.0028 7 6 3.5805 -1.1970 -0.0016 8 6 4.3340 -2.5022 -0.0034 9 6 4.7635 -2.8362 1.4020 10 8 4.4021 -2.1411 2.3279 11 7 5.5491 -3.9073 1.6301 12 6 5.8877 -4.8146 0.5308 13 6 7.1541 -4.3440 -0.1369 14 1 7.6566 -3.4578 0.2220 15 6 7.6711 -5.0446 -1.2059 16 7 7.0595 -6.1238 -1.6426 17 14 9.2413 -4.4616 -2.0332 18 1 10.4123 -5.0921 -1.3727 19 1 9.2165 -4.8445 -3.4678 20 1 9.3432 -2.9847 -1.9167 21 6 6.0593 -4.1677 2.9784 22 6 5.0800 -5.0728 3.7284 23 6 5.0087 -6.4338 3.0332 24 6 5.5599 -5.2605 5.1690 25 6 3.6920 -4.4292 3.7330 26 6 2.1980 -1.1970 -0.0056 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6583 2.1325 -0.0004 31 1 4.1204 2.1326 -0.0010 32 1 6.1412 0.0807 -1.0276 33 1 6.1425 0.8466 0.5792 34 1 6.1423 -0.9279 0.4391 35 1 5.2138 -2.4129 -0.6405 36 1 3.6886 -3.2939 -0.3838 37 1 6.0359 -5.8208 0.9228 38 1 5.0755 -4.8237 -0.1960 39 1 7.4231 -6.6164 -2.3949 40 1 7.0298 -4.6593 2.9110 41 1 6.1663 -3.2248 3.5148 42 1 5.9977 -6.8924 3.0298 43 1 4.3114 -7.0789 3.5677 44 1 4.6668 -6.3001 2.0068 45 1 5.6107 -4.2909 5.6643 46 1 4.8625 -5.9057 5.7032 47 1 6.5489 -5.7191 5.1657 48 1 3.3118 -4.3780 2.7128 49 1 3.0157 -5.0282 4.3430 50 1 3.7594 -3.4230 4.1466 51 1 1.6579 -2.1323 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343020643.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:22 Heat of formation + Delta-G solvation = -42.466585 kcal Electronic energy + Delta-G solvation = -28161.243669 eV Core-core repulsion = 24638.315555 eV Total energy + Delta-G solvation = -3522.928115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.93676 -38.87259 -36.60295 -34.31871 -33.83941 -32.34582 -31.92768 -29.03386 -28.07523 -27.51297 -26.89668 -26.64066 -25.15288 -24.45355 -22.84024 -21.84054 -20.17732 -18.74518 -17.85164 -16.72893 -16.19996 -15.72526 -15.57953 -15.26398 -14.79090 -14.47347 -14.30376 -13.98609 -13.62381 -13.41126 -13.28767 -13.00800 -12.71390 -12.55257 -12.44830 -12.42158 -12.27847 -12.04871 -11.82995 -11.65514 -11.50815 -11.41737 -11.20682 -11.17609 -11.02169 -10.96427 -10.83649 -10.63770 -10.51549 -10.47282 -10.31661 -10.21247 -10.02958 -9.67516 -9.00449 -8.56664 -8.39157 -8.03702 -7.60612 -6.19124 -4.26519 1.65856 1.71462 3.21041 3.28926 3.31091 3.48725 3.87589 4.17970 4.34416 5.01395 5.04068 5.13738 5.18273 5.23590 5.24312 5.29400 5.38174 5.41129 5.60870 5.65816 5.68169 5.74310 5.84875 5.91618 5.92986 5.96685 5.98272 6.00988 6.05340 6.16373 6.22211 6.22688 6.23521 6.27141 6.33948 6.44271 6.49520 6.55993 6.58064 6.60727 6.71795 6.75461 6.84702 6.87513 6.92335 7.05869 7.20291 7.35241 7.59478 7.76257 8.06365 8.40386 8.79893 9.10650 9.41782 10.87078 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009238 B = 0.005327 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3030.379329 B = 5254.825115 C = 7225.706739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.098 4.098 3 C -0.126 4.126 4 C -0.120 4.120 5 C -0.071 4.071 6 C -0.117 4.117 7 C -0.046 4.046 8 C -0.104 4.104 9 C 0.521 3.479 10 O -0.562 6.562 11 N -0.593 5.593 12 C 0.232 3.768 13 C -0.537 4.537 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.133 3.867 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.106 4.106 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.037 0.963 50 H 0.063 0.937 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.664 6.912 4.703 11.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.071 4.071 6 C -0.174 4.174 7 C -0.046 4.046 8 C -0.143 4.143 9 C 0.309 3.691 10 O -0.442 6.442 11 N -0.323 5.323 12 C 0.112 3.888 13 C -0.576 4.576 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.529 5.529 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.009 3.991 22 C -0.086 4.086 23 C -0.198 4.198 24 C -0.193 4.193 25 C -0.184 4.184 26 C -0.124 4.124 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.133 0.867 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.082 0.918 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.821 7.098 5.029 11.698 hybrid contribution 1.001 0.037 -0.666 1.203 sum -6.820 7.134 4.363 10.791 Atomic orbital electron populations 1.20727 0.91700 1.02361 1.01811 1.19753 0.95607 0.93188 1.01225 1.20850 0.94100 0.97056 1.02444 1.20887 0.94061 0.97178 1.01644 1.19706 0.95995 0.92503 0.98944 1.20828 0.91355 1.03231 1.01945 1.19366 0.93208 0.93890 0.98138 1.20720 1.02114 0.94786 0.96675 1.20168 0.78403 0.80336 0.90156 1.90609 1.56809 1.51521 1.45276 1.48133 1.48159 1.26152 1.09848 1.19561 0.96063 0.89416 0.83729 1.21508 1.09198 1.11887 1.14997 0.92155 1.24917 0.97305 0.94740 0.96696 1.69913 1.39598 1.17015 1.26337 0.86578 0.83469 0.79251 0.78695 1.20574 1.21105 1.19732 1.21322 0.95942 0.98679 0.83147 1.20959 0.96571 0.96118 0.94925 1.21983 1.01270 0.95429 1.01164 1.21787 1.00746 1.01207 0.95607 1.21802 0.94958 1.00371 1.01285 1.20835 0.93435 0.97327 1.00851 0.91616 0.91800 0.91988 0.86771 0.86588 0.91285 0.92036 0.90834 0.86747 0.88822 0.93699 0.94803 0.92553 0.90761 0.91311 0.92770 0.93808 0.91460 0.92892 0.93023 0.92811 0.93166 0.94394 0.91798 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.10 -1.38 5.88 -104.63 -0.62 -2.00 16 3 C -0.13 -1.74 9.70 -39.59 -0.38 -2.13 16 4 C -0.12 -1.76 9.72 -39.58 -0.38 -2.14 16 5 C -0.07 -1.19 5.88 -104.63 -0.62 -1.81 16 6 C -0.12 -1.87 9.35 36.00 0.34 -1.53 16 7 C -0.05 -0.80 4.38 -104.62 -0.46 -1.25 16 8 C -0.10 -1.92 3.72 -29.03 -0.11 -2.03 16 9 C 0.52 10.43 5.22 -10.98 -0.06 10.37 16 10 O -0.56 -12.07 13.43 5.55 0.07 -12.00 16 11 N -0.59 -11.89 1.99 -175.06 -0.35 -12.23 16 12 C 0.23 5.23 3.94 -5.19 -0.02 5.21 16 13 C -0.54 -13.35 8.92 -34.44 -0.31 -13.66 16 14 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.86 13.29 55.43 0.74 -23.12 16 17 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 C 0.13 2.42 4.59 -4.05 -0.02 2.40 16 22 C -0.08 -1.35 0.85 -154.51 -0.13 -1.48 16 23 C -0.14 -2.27 7.39 37.16 0.27 -2.00 16 24 C -0.14 -1.82 8.47 37.16 0.31 -1.50 16 25 C -0.13 -2.10 7.01 37.16 0.26 -1.84 16 26 C -0.11 -1.70 9.33 -39.58 -0.37 -2.06 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.07 1.34 5.81 -51.93 -0.30 1.04 16 35 H 0.11 2.25 6.56 -51.93 -0.34 1.91 16 36 H 0.09 1.66 7.40 -51.93 -0.38 1.28 16 37 H 0.05 1.06 5.86 -51.93 -0.30 0.76 16 38 H 0.03 0.80 6.63 -51.93 -0.34 0.45 16 39 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.07 1.37 8.08 -51.93 -0.42 0.95 16 41 H 0.07 1.28 7.47 -51.93 -0.39 0.89 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.21 5.82 -51.93 -0.30 0.91 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.91 6.67 -51.93 -0.35 0.57 16 49 H 0.04 0.56 8.14 -51.92 -0.42 0.13 16 50 H 0.06 1.15 7.06 -51.93 -0.37 0.78 16 51 H 0.12 1.71 8.05 -52.49 -0.42 1.29 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -27.58 396.47 -9.56 -37.14 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.95 Total: 5.86 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.02 Total: -16.67 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: 0.39 Total: -35.35 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.07 Total: -12.00 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.58 -9.56 -37.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343020643.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.330 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds