Wall clock time and date at job start Tue Mar 31 2020 11:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99717 * 2 1 4 4 C 1.52998 * 112.85109 * 308.30635 * 3 2 1 5 5 C 1.53771 * 113.61681 * 79.51131 * 3 2 1 6 6 C 1.53780 * 87.08603 * 140.06044 * 5 3 2 7 7 H 1.08999 * 113.61050 * 89.19722 * 6 5 3 8 8 N 1.46900 * 113.61797 * 220.01776 * 6 5 3 9 9 C 1.46904 * 111.00004 * 300.32147 * 8 6 5 10 10 C 1.46898 * 111.00013 * 176.36203 * 8 6 5 11 11 C 1.50702 * 109.46991 * 189.99864 * 10 8 6 12 12 C 1.38631 * 119.74506 * 90.00301 * 11 10 8 13 13 C 1.37621 * 120.24729 * 179.97438 * 12 11 10 14 14 C 1.40722 * 119.74339 * 0.02635 * 13 12 11 15 15 C 1.41399 * 120.24042 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99964 * 332.65833 * 15 14 13 17 17 C 1.39947 * 119.99502 * 152.65835 * 15 14 13 18 18 N 1.30822 * 120.00511 * 348.61310 * 17 15 14 19 19 Si 1.86803 * 119.99442 * 168.61050 * 17 15 14 20 20 H 1.48506 * 109.46842 * 180.02562 * 19 17 15 21 21 H 1.48495 * 109.47218 * 299.99970 * 19 17 15 22 22 H 1.48500 * 109.47283 * 60.00400 * 19 17 15 23 23 C 1.40707 * 119.51214 * 0.27111 * 14 13 12 24 24 C 1.37622 * 119.74303 * 359.40380 * 23 14 13 25 25 C 1.53778 * 87.17148 * 334.61050 * 6 5 3 26 26 C 1.52995 * 113.61780 * 139.93903 * 25 6 5 27 27 C 1.53006 * 113.61241 * 270.84034 * 25 6 5 28 28 H 1.09007 * 109.46976 * 299.99444 * 1 2 3 29 29 H 1.09001 * 109.47485 * 59.99605 * 1 2 3 30 30 H 1.09004 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47060 * 171.68896 * 4 3 2 32 32 H 1.08993 * 109.47584 * 291.69854 * 4 3 2 33 33 H 1.09007 * 109.46630 * 51.69983 * 4 3 2 34 34 H 1.09002 * 113.61719 * 25.51195 * 5 3 2 35 35 H 1.09002 * 113.69289 * 254.62059 * 5 3 2 36 36 H 1.09001 * 109.46851 * 298.13517 * 9 8 6 37 37 H 1.08995 * 109.47086 * 58.13154 * 9 8 6 38 38 H 1.08992 * 109.47039 * 178.13839 * 9 8 6 39 39 H 1.08997 * 109.46695 * 70.00301 * 10 8 6 40 40 H 1.08994 * 109.47433 * 310.00565 * 10 8 6 41 41 H 1.07998 * 119.88201 * 0.02562 * 12 11 10 42 42 H 1.07999 * 120.13125 * 180.02562 * 13 12 11 43 43 H 0.96998 * 119.99857 * 179.97438 * 18 17 15 44 44 H 1.08001 * 120.13270 * 179.73337 * 23 14 13 45 45 H 1.07999 * 119.87755 * 180.31770 * 24 23 14 46 46 H 1.09000 * 109.47206 * 79.50411 * 26 25 6 47 47 H 1.09001 * 109.47240 * 199.50252 * 26 25 6 48 48 H 1.09004 * 109.46640 * 319.50290 * 26 25 6 49 49 H 1.08995 * 109.47192 * 56.46041 * 27 25 6 50 50 H 1.08997 * 109.46930 * 176.45437 * 27 25 6 51 51 H 1.08994 * 109.47007 * 296.45801 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.4534 2.2037 -1.1064 5 6 2.0264 1.9726 1.3854 6 6 3.4285 2.4951 1.0306 7 1 3.4195 3.4610 0.5255 8 7 4.3758 2.4467 2.1522 9 6 3.8962 3.2544 3.2817 10 6 5.7153 2.8764 1.7289 11 6 6.7066 2.5838 2.8256 12 6 7.3595 1.3611 2.8544 13 6 8.2671 1.0832 3.8508 14 6 8.5310 2.0455 4.8431 15 6 9.4620 1.7712 5.8714 16 1 9.6408 0.7519 6.1801 17 6 10.1517 2.8207 6.4889 18 7 10.1087 4.0233 5.9757 19 14 11.1337 2.5043 8.0462 20 1 11.7653 3.7699 8.4988 21 1 10.2282 1.9963 9.1078 22 1 12.1879 1.4955 7.7703 23 6 7.8578 3.2805 4.8073 24 6 6.9592 3.5394 3.7977 25 6 3.5481 1.2993 0.0711 26 6 4.2257 1.6441 -1.2565 27 6 4.1263 0.0433 0.7263 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8194 3.2209 -0.9671 32 1 1.7796 1.8297 -2.0767 33 1 0.3642 2.2005 -1.0632 34 1 2.0215 1.2623 2.2122 35 1 1.2827 2.7612 1.5005 36 1 3.8142 4.2968 2.9739 37 1 2.9187 2.8912 3.5988 38 1 4.5999 3.1745 4.1102 39 1 5.7055 3.9469 1.5242 40 1 6.0018 2.3365 0.8265 41 1 7.1556 0.6243 2.0916 42 1 8.7749 0.1303 3.8712 43 1 10.5865 4.7507 6.4040 44 1 8.0495 4.0247 5.5663 45 1 6.4451 4.4886 3.7653 46 1 5.3063 1.6730 -1.1162 47 1 3.9760 0.8866 -1.9995 48 1 3.8777 2.6184 -1.5998 49 1 3.5192 -0.2283 1.5898 50 1 4.1226 -0.7759 0.0074 51 1 5.1489 0.2395 1.0484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343535920.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:05 Heat of formation + Delta-G solvation = -5.671847 kcal Electronic energy + Delta-G solvation = -27607.335558 eV Core-core repulsion = 24086.002983 eV Total energy + Delta-G solvation = -3521.332575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87000 -37.94502 -36.82965 -34.99429 -33.43026 -31.02219 -30.24502 -29.25442 -29.05790 -27.18655 -27.03186 -26.56208 -25.30394 -23.19459 -22.03057 -21.15182 -20.79006 -19.66207 -17.88832 -17.23927 -16.51714 -15.83321 -15.45334 -15.27293 -15.11491 -14.63546 -14.42246 -14.07050 -13.85446 -13.72227 -13.29117 -13.17536 -12.90456 -12.64303 -12.38552 -12.22976 -12.07193 -11.98235 -11.87955 -11.76331 -11.67213 -11.54246 -11.36526 -11.18347 -11.14503 -10.93293 -10.84880 -10.64011 -10.46059 -10.33977 -10.09999 -9.98002 -9.48959 -9.42658 -9.30215 -9.13285 -7.90194 -7.37447 -7.19379 -6.66676 -4.31979 2.78738 3.08468 3.11762 3.13280 3.21259 3.63861 3.97053 4.32320 4.45511 4.47392 4.63293 4.68624 4.83393 5.12457 5.19703 5.24805 5.31392 5.35321 5.44490 5.53699 5.54497 5.60361 5.69012 5.75225 5.77809 5.79521 5.83042 5.92722 5.96029 6.03873 6.10359 6.12648 6.19470 6.33506 6.37181 6.39945 6.44171 6.48612 6.60026 6.79836 6.99053 7.13300 7.19948 7.31048 7.43092 7.51344 7.55931 7.67742 7.93857 8.11098 8.19404 8.36305 8.69850 8.95546 9.02953 10.26806 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029813 B = 0.002679 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.959253 B =10447.479707 C =10540.245313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.091 3.909 4 C -0.160 4.160 5 C -0.147 4.147 6 C 0.064 3.936 7 H 0.059 0.941 8 N -0.515 5.515 9 C 0.027 3.973 10 C 0.119 3.881 11 C -0.200 4.200 12 C -0.072 4.072 13 C -0.224 4.224 14 C 0.111 3.889 15 C -0.464 4.464 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.803 5.803 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.265 1.265 22 H -0.266 1.266 23 C -0.160 4.160 24 C -0.097 4.097 25 C -0.047 4.047 26 C -0.140 4.140 27 C -0.103 4.103 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.014 0.986 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.020 0.980 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.279 0.721 44 H 0.119 0.881 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.053 0.947 49 H 0.060 0.940 50 H 0.045 0.955 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.695 -1.465 -10.976 19.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.283 6.283 3 C 0.051 3.949 4 C -0.217 4.217 5 C -0.185 4.185 6 C -0.045 4.045 7 H 0.077 0.923 8 N -0.238 5.238 9 C -0.121 4.121 10 C -0.007 4.007 11 C -0.201 4.201 12 C -0.090 4.090 13 C -0.244 4.244 14 C 0.108 3.892 15 C -0.494 4.494 16 H 0.093 0.907 17 C -0.143 4.143 18 N -0.429 5.429 19 Si 0.734 3.266 20 H -0.204 1.204 21 H -0.190 1.190 22 H -0.191 1.191 23 C -0.180 4.180 24 C -0.116 4.116 25 C -0.048 4.048 26 C -0.198 4.198 27 C -0.160 4.160 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.064 0.936 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.450 -1.866 -10.786 18.935 hybrid contribution 0.179 1.152 0.449 1.249 sum -15.271 -0.714 -10.337 18.455 Atomic orbital electron populations 1.22696 0.82163 1.02238 0.99781 1.87993 1.18779 1.26783 1.94712 1.22965 0.94377 0.83372 0.94233 1.22098 1.01017 0.99795 0.98820 1.23606 0.96344 1.00372 0.98177 1.22984 0.92673 0.95964 0.92927 0.92317 1.62248 1.01559 1.54217 1.05805 1.22351 1.00696 0.93846 0.95245 1.20750 0.86857 0.96406 0.96664 1.18856 1.04080 0.96523 1.00677 1.20310 0.96358 0.94919 0.97442 1.21010 1.04768 1.00637 0.97965 1.17621 0.89837 0.91219 0.90497 1.19555 1.19691 0.94091 1.16044 0.90700 1.25879 0.96094 0.94571 0.97724 1.69789 1.35171 1.01398 1.36592 0.86355 0.79965 0.78492 0.81781 1.20433 1.18951 1.19088 1.21350 0.97676 0.99358 0.99579 1.20532 0.98666 0.96644 0.95766 1.21996 0.91255 0.96662 0.94871 1.21831 1.00890 1.00878 0.96159 1.21214 1.01482 0.93817 0.99517 0.94270 0.94135 0.90039 0.91217 0.91373 0.92122 0.88396 0.91959 0.96771 0.92500 0.89954 0.96134 0.91614 0.89527 0.89184 0.91044 0.86337 0.90019 0.91985 0.92416 0.92776 0.92136 0.93578 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.41 101.05 1.05 1.30 16 2 O -0.36 -4.39 9.83 -35.23 -0.35 -4.73 16 3 C 0.09 1.01 1.18 -89.72 -0.11 0.90 16 4 C -0.16 -1.44 7.52 37.16 0.28 -1.16 16 5 C -0.15 -1.73 5.49 -25.92 -0.14 -1.87 16 6 C 0.06 0.82 2.27 -66.90 -0.15 0.67 16 7 H 0.06 0.75 7.49 -51.93 -0.39 0.36 16 8 N -0.51 -8.05 3.73 -235.36 -0.88 -8.93 16 9 C 0.03 0.41 8.99 60.07 0.54 0.95 16 10 C 0.12 2.08 4.70 -4.98 -0.02 2.06 16 11 C -0.20 -4.24 4.91 -104.33 -0.51 -4.75 16 12 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 13 C -0.22 -5.53 9.80 -38.87 -0.38 -5.91 16 14 C 0.11 2.96 5.56 -106.82 -0.59 2.36 16 15 C -0.46 -12.43 9.07 -37.74 -0.34 -12.77 16 16 H 0.07 1.93 7.87 -52.49 -0.41 1.52 16 17 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 18 N -0.80 -20.98 10.80 55.55 0.60 -20.38 16 19 Si 0.91 18.96 29.57 -169.99 -5.03 13.93 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.16 -4.14 8.67 -38.87 -0.34 -4.48 16 24 C -0.10 -2.22 7.89 -39.66 -0.31 -2.53 16 25 C -0.05 -0.58 0.91 -153.60 -0.14 -0.72 16 26 C -0.14 -1.56 7.96 37.16 0.30 -1.26 16 27 C -0.10 -1.45 7.77 37.16 0.29 -1.16 16 28 H 0.04 0.33 8.01 -51.93 -0.42 -0.09 16 29 H 0.04 0.31 6.42 -51.93 -0.33 -0.03 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 7.10 -51.93 -0.37 0.23 16 32 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 33 H 0.06 0.48 6.35 -51.92 -0.33 0.15 16 34 H 0.10 1.30 7.56 -51.93 -0.39 0.90 16 35 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.79 7.19 -51.93 -0.37 0.41 16 38 H 0.08 1.47 6.01 -51.93 -0.31 1.16 16 39 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 40 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 41 H 0.09 1.74 7.66 -52.49 -0.40 1.34 16 42 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 43 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 44 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 45 H 0.08 1.72 8.00 -52.49 -0.42 1.30 16 46 H 0.06 0.72 7.31 -51.93 -0.38 0.35 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.54 6.97 -51.93 -0.36 0.17 16 49 H 0.06 0.91 7.27 -51.93 -0.38 0.53 16 50 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.07 1.04 6.75 -51.93 -0.35 0.69 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -27.26 386.34 -9.64 -36.90 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.75 Total: 5.96 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -1.06 Total: -28.57 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: -0.28 Total: -29.31 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.35 Total: -4.73 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.26 -9.64 -36.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535920.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -27.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds