Wall clock time and date at job start Tue Mar 31 2020 11:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 113.99749 * 2 1 4 4 C 1.53000 * 112.85185 * 311.18667 * 3 2 1 5 5 C 1.53776 * 113.62028 * 82.49930 * 3 2 1 6 6 C 1.53781 * 87.08312 * 89.11395 * 5 3 2 7 7 H 1.09006 * 113.61445 * 270.89333 * 6 5 3 8 8 N 1.46894 * 113.61654 * 139.98424 * 6 5 3 9 9 C 1.46903 * 111.00000 * 193.31584 * 8 6 5 10 10 C 1.46900 * 111.00390 * 69.35809 * 8 6 5 11 11 C 1.50695 * 109.47127 * 190.00090 * 10 8 6 12 12 C 1.38632 * 119.75002 * 269.72766 * 11 10 8 13 13 C 1.37618 * 120.24960 * 179.72830 * 12 11 10 14 14 C 1.40718 * 119.74253 * 0.56236 * 13 12 11 15 15 C 1.41392 * 120.24431 * 179.68363 * 14 13 12 16 16 H 1.07996 * 120.00164 * 153.57821 * 15 14 13 17 17 C 1.39949 * 120.00221 * 333.57987 * 15 14 13 18 18 N 1.30825 * 119.99557 * 341.82147 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 161.81678 * 17 15 14 20 20 H 1.48499 * 109.47213 * 94.97286 * 19 17 15 21 21 H 1.48499 * 109.47384 * 214.97625 * 19 17 15 22 22 H 1.48507 * 109.46815 * 334.97425 * 19 17 15 23 23 C 1.40716 * 119.51052 * 359.71245 * 14 13 12 24 24 C 1.37615 * 119.74618 * 359.97438 * 23 14 13 25 25 C 1.53784 * 87.08240 * 25.43379 * 6 5 3 26 26 C 1.52998 * 113.61385 * 89.11404 * 25 6 5 27 27 C 1.52997 * 113.61742 * 219.93567 * 25 6 5 28 28 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47282 * 300.00723 * 1 2 3 30 30 H 1.09005 * 109.47014 * 60.00523 * 1 2 3 31 31 H 1.09001 * 109.47229 * 288.81583 * 4 3 2 32 32 H 1.09005 * 109.46861 * 48.80896 * 4 3 2 33 33 H 1.09000 * 109.47667 * 168.80673 * 4 3 2 34 34 H 1.08999 * 113.61179 * 334.56875 * 5 3 2 35 35 H 1.09003 * 113.61624 * 203.66253 * 5 3 2 36 36 H 1.08998 * 109.47394 * 53.47771 * 9 8 6 37 37 H 1.09001 * 109.47050 * 173.48459 * 9 8 6 38 38 H 1.09000 * 109.46600 * 293.48019 * 9 8 6 39 39 H 1.09003 * 109.46407 * 310.00045 * 10 8 6 40 40 H 1.08998 * 109.46748 * 70.00066 * 10 8 6 41 41 H 1.08002 * 119.87836 * 359.97437 * 12 11 10 42 42 H 1.07997 * 120.13109 * 180.27599 * 13 12 11 43 43 H 0.97006 * 119.99632 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.12431 * 180.02562 * 23 14 13 45 45 H 1.08001 * 119.87431 * 180.02562 * 24 23 14 46 46 H 1.08994 * 109.47005 * 64.94011 * 26 25 6 47 47 H 1.09000 * 109.47307 * 184.94397 * 26 25 6 48 48 H 1.09002 * 109.47358 * 304.94352 * 26 25 6 49 49 H 1.09004 * 109.46844 * 40.49714 * 27 25 6 50 50 H 1.09006 * 109.47067 * 160.49298 * 27 25 6 51 51 H 1.08991 * 109.47493 * 280.49360 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4037 2.2258 -1.0611 5 6 2.0928 1.9431 1.3969 6 6 3.4695 1.2721 1.5357 7 1 3.4251 0.2671 1.9555 8 7 4.4746 2.1209 2.1891 9 6 5.8245 1.5683 2.0139 10 6 4.1623 2.3062 3.6125 11 6 5.0621 3.3681 4.1901 12 6 6.2803 3.0095 4.7463 13 6 7.1126 3.9714 5.2717 14 6 6.7176 5.3219 5.2534 15 6 7.5614 6.3181 5.7963 16 1 7.5021 7.3332 5.4323 17 6 8.4737 5.9888 6.8052 18 7 8.3191 4.8863 7.4924 19 14 9.9120 7.1233 7.1707 20 1 9.5512 8.0371 8.2843 21 1 11.0950 6.3137 7.5582 22 1 10.2331 7.9211 5.9600 23 6 5.4764 5.6735 4.6914 24 6 4.6632 4.6956 4.1660 25 6 3.5481 1.2951 0.0000 26 6 4.1696 2.5749 -0.5628 27 6 4.1543 0.0258 -0.6018 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7267 1.9021 -2.0505 32 1 0.3161 2.1817 -1.0015 33 1 1.7358 3.2493 -0.8871 34 1 1.3486 1.5613 2.0958 35 1 2.1377 3.0320 1.3778 36 1 6.0129 1.3986 0.9539 37 1 6.5589 2.2723 2.4054 38 1 5.9032 0.6241 2.5527 39 1 3.1221 2.6141 3.7190 40 1 4.3199 1.3679 4.1442 41 1 6.5791 1.9718 4.7639 42 1 8.0631 3.6904 5.7005 43 1 8.9516 4.6579 8.1915 44 1 5.1636 6.7071 4.6718 45 1 3.7103 4.9632 3.7338 46 1 5.2132 2.6378 -0.2547 47 1 4.1123 2.5585 -1.6511 48 1 3.6260 3.4401 -0.1833 49 1 3.7824 -0.8455 -0.0625 50 1 3.8720 -0.0491 -1.6519 51 1 5.2403 0.0675 -0.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343535923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:14 Heat of formation + Delta-G solvation = -4.047962 kcal Electronic energy + Delta-G solvation = -27515.404843 eV Core-core repulsion = 23994.142685 eV Total energy + Delta-G solvation = -3521.262158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.86531 -37.93461 -36.84231 -34.96609 -33.41160 -30.86946 -30.28922 -29.38565 -29.23045 -27.43145 -27.00835 -26.66238 -24.97625 -23.27135 -22.06999 -20.96004 -20.66886 -19.59513 -18.44277 -17.24659 -16.01391 -15.84321 -15.66704 -15.25815 -15.18615 -14.76633 -14.40704 -14.09159 -13.80677 -13.52971 -13.25943 -13.17754 -12.95141 -12.63035 -12.53215 -12.38129 -12.20013 -11.96003 -11.90488 -11.77667 -11.62448 -11.55988 -11.32813 -11.16750 -11.02547 -10.98546 -10.87376 -10.74224 -10.52075 -10.38902 -10.08775 -9.84983 -9.50348 -9.40571 -9.31497 -9.08746 -7.88666 -7.38134 -7.22825 -6.73424 -4.30730 2.77465 3.08429 3.11458 3.13251 3.20860 3.50477 3.95838 4.33664 4.40103 4.47887 4.69356 4.76800 4.97165 5.13553 5.20620 5.24096 5.26549 5.40101 5.43967 5.54023 5.60366 5.63987 5.72733 5.75945 5.77483 5.81241 5.91211 5.94319 5.95282 5.98317 6.07191 6.11785 6.18806 6.25330 6.35994 6.40519 6.44799 6.45798 6.51175 6.62342 6.97983 7.11847 7.16069 7.29221 7.41275 7.52610 7.58727 7.66735 7.93512 8.09479 8.18661 8.34886 8.67893 8.93723 9.02061 10.22433 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.002646 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.739198 B =10580.336037 C =10672.284356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.092 3.908 4 C -0.166 4.166 5 C -0.147 4.147 6 C 0.068 3.932 7 H 0.061 0.939 8 N -0.518 5.518 9 C 0.026 3.974 10 C 0.120 3.880 11 C -0.202 4.202 12 C -0.093 4.093 13 C -0.164 4.164 14 C 0.114 3.886 15 C -0.466 4.466 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.795 5.795 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.227 4.227 24 C -0.070 4.070 25 C -0.053 4.053 26 C -0.114 4.114 27 C -0.130 4.130 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.014 0.986 39 H 0.062 0.938 40 H 0.021 0.979 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.279 0.721 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -8.133 -13.684 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.280 6.280 3 C 0.052 3.948 4 C -0.223 4.223 5 C -0.185 4.185 6 C -0.041 4.041 7 H 0.078 0.922 8 N -0.241 5.241 9 C -0.122 4.122 10 C -0.006 4.006 11 C -0.204 4.204 12 C -0.112 4.112 13 C -0.183 4.183 14 C 0.111 3.889 15 C -0.496 4.496 16 H 0.094 0.906 17 C -0.140 4.140 18 N -0.421 5.421 19 Si 0.729 3.271 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.247 4.247 24 C -0.089 4.089 25 C -0.054 4.054 26 C -0.171 4.171 27 C -0.187 4.187 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.039 0.961 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.252 -7.983 -13.700 18.882 hybrid contribution 0.420 -0.211 0.848 0.969 sum -9.832 -8.193 -12.852 18.138 Atomic orbital electron populations 1.22739 0.81711 1.02311 1.00136 1.87909 1.19163 1.26200 1.94755 1.22494 0.94219 0.83377 0.94698 1.22206 1.00782 1.00295 0.99067 1.23579 0.96887 1.01466 0.96538 1.23108 0.92328 0.94925 0.93706 0.92166 1.62325 1.01346 1.46323 1.14155 1.22406 0.91473 0.97877 1.00460 1.20696 0.98091 0.95981 0.85825 1.18836 0.97891 0.93305 1.10353 1.20504 0.94483 0.96975 0.99263 1.21199 0.99995 0.93091 1.04063 1.17597 0.90105 0.92665 0.88517 1.19561 1.16356 0.96634 1.17054 0.90568 1.25882 0.97983 0.95465 0.94688 1.69839 1.33280 1.23108 1.15850 0.86371 0.80656 0.80635 0.79478 1.19656 1.20101 1.18451 1.20970 0.96166 0.97191 1.10325 1.20296 0.97566 0.92569 0.98422 1.21964 0.91575 0.96820 0.95044 1.21475 1.01808 0.95141 0.98655 1.21612 0.99934 0.96732 1.00427 0.89922 0.94076 0.93767 0.91963 0.92354 0.90686 0.91673 0.88336 0.92164 0.90275 0.96698 0.91931 0.96109 0.90018 0.87028 0.91006 0.89224 0.89655 0.91097 0.93459 0.91770 0.92257 0.92840 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.35 101.05 1.05 1.28 16 2 O -0.36 -4.19 9.52 -35.23 -0.34 -4.53 16 3 C 0.09 1.02 1.08 -89.80 -0.10 0.93 16 4 C -0.17 -1.55 8.08 37.16 0.30 -1.25 16 5 C -0.15 -1.81 5.94 -25.92 -0.15 -1.96 16 6 C 0.07 0.93 2.55 -66.90 -0.17 0.76 16 7 H 0.06 0.89 8.01 -51.93 -0.42 0.47 16 8 N -0.52 -8.15 3.91 -235.35 -0.92 -9.07 16 9 C 0.03 0.40 8.52 60.07 0.51 0.91 16 10 C 0.12 2.14 5.04 -4.98 -0.03 2.12 16 11 C -0.20 -4.33 4.90 -104.33 -0.51 -4.84 16 12 C -0.09 -2.15 8.00 -39.66 -0.32 -2.46 16 13 C -0.16 -4.25 8.68 -38.87 -0.34 -4.58 16 14 C 0.11 3.04 5.55 -106.82 -0.59 2.44 16 15 C -0.47 -12.47 9.04 -37.74 -0.34 -12.81 16 16 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 17 C 0.08 1.96 5.11 -17.34 -0.09 1.87 16 18 N -0.80 -20.76 11.11 55.55 0.62 -20.15 16 19 Si 0.90 18.80 29.60 -169.99 -5.03 13.77 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 23 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 24 C -0.07 -1.56 9.67 -39.66 -0.38 -1.94 16 25 C -0.05 -0.63 0.68 -153.69 -0.10 -0.74 16 26 C -0.11 -1.33 7.16 37.16 0.27 -1.06 16 27 C -0.13 -1.46 8.57 37.16 0.32 -1.14 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.34 7.89 -51.93 -0.41 -0.07 16 30 H 0.04 0.33 6.36 -51.93 -0.33 0.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.48 6.18 -51.93 -0.32 0.16 16 33 H 0.07 0.69 6.65 -51.93 -0.35 0.34 16 34 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.10 1.26 7.44 -51.93 -0.39 0.87 16 36 H 0.06 0.83 5.03 -51.93 -0.26 0.57 16 37 H 0.08 1.41 6.34 -51.93 -0.33 1.08 16 38 H 0.01 0.23 8.12 -51.93 -0.42 -0.20 16 39 H 0.06 1.07 7.31 -51.93 -0.38 0.69 16 40 H 0.02 0.37 8.04 -51.93 -0.42 -0.04 16 41 H 0.08 1.74 8.04 -52.49 -0.42 1.32 16 42 H 0.11 3.00 6.33 -52.49 -0.33 2.67 16 43 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 44 H 0.09 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.07 0.91 6.11 -51.93 -0.32 0.59 16 47 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 48 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 49 H 0.06 0.71 7.59 -51.93 -0.39 0.31 16 50 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.05 0.59 7.21 -51.93 -0.37 0.21 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -27.22 385.96 -9.60 -36.82 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.68 Total: 5.78 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: -1.06 Total: -28.45 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: -0.30 Total: -29.21 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.34 Total: -4.53 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.22 -9.60 -36.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.768 kcal (2) G-P(sol) polarization free energy of solvation -27.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds