Wall clock time and date at job start Tue Mar 31 2020 11:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42894 * 113.99749 * 2 1 4 4 C 1.53000 * 112.85185 * 311.18667 * 3 2 1 5 5 C 1.53776 * 113.62028 * 82.49930 * 3 2 1 6 6 C 1.53781 * 87.08312 * 89.11395 * 5 3 2 7 7 H 1.09006 * 113.61445 * 270.89333 * 6 5 3 8 8 N 1.46894 * 113.61654 * 139.98424 * 6 5 3 9 9 C 1.46903 * 111.00000 * 193.31584 * 8 6 5 10 10 C 1.46900 * 111.00390 * 69.35809 * 8 6 5 11 11 C 1.50695 * 109.47127 * 190.00090 * 10 8 6 12 12 C 1.38632 * 119.75002 * 269.72766 * 11 10 8 13 13 C 1.37618 * 120.24960 * 179.72830 * 12 11 10 14 14 C 1.40718 * 119.74253 * 0.56236 * 13 12 11 15 15 C 1.41392 * 120.24431 * 179.68363 * 14 13 12 16 16 H 1.07996 * 120.00164 * 153.57821 * 15 14 13 17 17 C 1.39949 * 120.00221 * 333.57987 * 15 14 13 18 18 N 1.30825 * 119.99557 * 341.82147 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 161.81678 * 17 15 14 20 20 H 1.48499 * 109.47213 * 94.97286 * 19 17 15 21 21 H 1.48499 * 109.47384 * 214.97625 * 19 17 15 22 22 H 1.48507 * 109.46815 * 334.97425 * 19 17 15 23 23 C 1.40716 * 119.51052 * 359.71245 * 14 13 12 24 24 C 1.37615 * 119.74618 * 359.97438 * 23 14 13 25 25 C 1.53784 * 87.08240 * 25.43379 * 6 5 3 26 26 C 1.52998 * 113.61385 * 89.11404 * 25 6 5 27 27 C 1.52997 * 113.61742 * 219.93567 * 25 6 5 28 28 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47282 * 300.00723 * 1 2 3 30 30 H 1.09005 * 109.47014 * 60.00523 * 1 2 3 31 31 H 1.09001 * 109.47229 * 288.81583 * 4 3 2 32 32 H 1.09005 * 109.46861 * 48.80896 * 4 3 2 33 33 H 1.09000 * 109.47667 * 168.80673 * 4 3 2 34 34 H 1.08999 * 113.61179 * 334.56875 * 5 3 2 35 35 H 1.09003 * 113.61624 * 203.66253 * 5 3 2 36 36 H 1.08998 * 109.47394 * 53.47771 * 9 8 6 37 37 H 1.09001 * 109.47050 * 173.48459 * 9 8 6 38 38 H 1.09000 * 109.46600 * 293.48019 * 9 8 6 39 39 H 1.09003 * 109.46407 * 310.00045 * 10 8 6 40 40 H 1.08998 * 109.46748 * 70.00066 * 10 8 6 41 41 H 1.08002 * 119.87836 * 359.97437 * 12 11 10 42 42 H 1.07997 * 120.13109 * 180.27599 * 13 12 11 43 43 H 0.97006 * 119.99632 * 179.97438 * 18 17 15 44 44 H 1.08003 * 120.12431 * 180.02562 * 23 14 13 45 45 H 1.08001 * 119.87431 * 180.02562 * 24 23 14 46 46 H 1.08994 * 109.47005 * 64.94011 * 26 25 6 47 47 H 1.09000 * 109.47307 * 184.94397 * 26 25 6 48 48 H 1.09002 * 109.47358 * 304.94352 * 26 25 6 49 49 H 1.09004 * 109.46844 * 40.49714 * 27 25 6 50 50 H 1.09006 * 109.47067 * 160.49298 * 27 25 6 51 51 H 1.08991 * 109.47493 * 280.49360 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4037 2.2258 -1.0611 5 6 2.0928 1.9431 1.3969 6 6 3.4695 1.2721 1.5357 7 1 3.4251 0.2671 1.9555 8 7 4.4746 2.1209 2.1891 9 6 5.8245 1.5683 2.0139 10 6 4.1623 2.3062 3.6125 11 6 5.0621 3.3681 4.1901 12 6 6.2803 3.0095 4.7463 13 6 7.1126 3.9714 5.2717 14 6 6.7176 5.3219 5.2534 15 6 7.5614 6.3181 5.7963 16 1 7.5021 7.3332 5.4323 17 6 8.4737 5.9888 6.8052 18 7 8.3191 4.8863 7.4924 19 14 9.9120 7.1233 7.1707 20 1 9.5512 8.0371 8.2843 21 1 11.0950 6.3137 7.5582 22 1 10.2331 7.9211 5.9600 23 6 5.4764 5.6735 4.6914 24 6 4.6632 4.6956 4.1660 25 6 3.5481 1.2951 0.0000 26 6 4.1696 2.5749 -0.5628 27 6 4.1543 0.0258 -0.6018 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7267 1.9021 -2.0505 32 1 0.3161 2.1817 -1.0015 33 1 1.7358 3.2493 -0.8871 34 1 1.3486 1.5613 2.0958 35 1 2.1377 3.0320 1.3778 36 1 6.0129 1.3986 0.9539 37 1 6.5589 2.2723 2.4054 38 1 5.9032 0.6241 2.5527 39 1 3.1221 2.6141 3.7190 40 1 4.3199 1.3679 4.1442 41 1 6.5791 1.9718 4.7639 42 1 8.0631 3.6904 5.7005 43 1 8.9516 4.6579 8.1915 44 1 5.1636 6.7071 4.6718 45 1 3.7103 4.9632 3.7338 46 1 5.2132 2.6378 -0.2547 47 1 4.1123 2.5585 -1.6511 48 1 3.6260 3.4401 -0.1833 49 1 3.7824 -0.8455 -0.0625 50 1 3.8720 -0.0491 -1.6519 51 1 5.2403 0.0675 -0.5196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343535923.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:13 Heat of formation + Delta-G solvation = -16.927813 kcal Electronic energy + Delta-G solvation = -27515.963355 eV Core-core repulsion = 23994.142685 eV Total energy + Delta-G solvation = -3521.820671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82750 -39.62357 -37.99295 -36.30031 -35.14225 -32.05282 -31.75111 -31.14514 -30.28522 -28.69052 -28.22472 -27.46480 -26.46562 -24.70630 -23.13045 -22.73537 -22.00869 -21.21445 -19.35361 -19.18294 -17.16616 -17.01937 -16.75469 -16.59838 -16.35498 -15.86053 -15.71321 -15.65001 -15.31129 -15.00924 -14.42975 -14.26047 -14.16071 -13.92428 -13.78673 -13.55121 -13.39654 -13.37737 -13.13945 -12.96930 -12.81768 -12.76044 -12.66428 -12.50908 -12.42900 -12.35954 -12.18000 -12.08578 -11.86418 -11.68447 -11.39959 -11.23844 -11.06259 -10.95942 -10.70020 -10.27546 -9.35142 -9.21637 -9.04448 -8.62199 -6.30119 0.97515 1.19302 1.37758 1.48443 1.54104 2.21711 2.69641 2.72013 3.21626 3.48230 3.56994 3.73670 3.83782 4.06350 4.21207 4.29215 4.34562 4.36369 4.52370 4.54952 4.56103 4.57202 4.58891 4.63265 4.68742 4.75970 4.78994 4.82624 4.85554 4.88240 4.95411 5.01865 5.06061 5.07326 5.11304 5.12516 5.19377 5.21025 5.25920 5.34912 5.39041 5.50546 5.57771 5.64913 5.75018 5.99764 6.12895 6.14816 6.30778 6.35902 6.42621 6.43884 6.73723 6.97714 7.07743 8.36025 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.029290 B = 0.002646 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.739198 B =10580.336037 C =10672.284356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.380 6.380 3 C 0.100 3.900 4 C -0.164 4.164 5 C -0.145 4.145 6 C 0.063 3.937 7 H 0.051 0.949 8 N -0.518 5.518 9 C 0.030 3.970 10 C 0.127 3.873 11 C -0.187 4.187 12 C -0.094 4.094 13 C -0.187 4.187 14 C 0.081 3.919 15 C -0.505 4.505 16 H 0.073 0.927 17 C 0.036 3.964 18 N -0.829 5.829 19 Si 0.979 3.021 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.241 4.241 24 C -0.070 4.070 25 C -0.052 4.052 26 C -0.110 4.110 27 C -0.126 4.126 28 H 0.095 0.905 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.075 0.925 40 H 0.020 0.980 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.286 0.714 44 H 0.094 0.906 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 -8.530 -15.277 21.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.299 6.299 3 C 0.060 3.940 4 C -0.221 4.221 5 C -0.183 4.183 6 C -0.046 4.046 7 H 0.069 0.931 8 N -0.241 5.241 9 C -0.118 4.118 10 C 0.000 4.000 11 C -0.189 4.189 12 C -0.112 4.112 13 C -0.206 4.206 14 C 0.079 3.921 15 C -0.535 4.535 16 H 0.091 0.909 17 C -0.178 4.178 18 N -0.456 5.456 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.261 4.261 24 C -0.089 4.089 25 C -0.052 4.052 26 C -0.167 4.167 27 C -0.183 4.183 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.131 0.869 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.518 -8.390 -15.305 20.912 hybrid contribution 0.661 -0.217 1.265 1.444 sum -10.857 -8.607 -14.040 19.725 Atomic orbital electron populations 1.22922 0.80208 1.03476 1.00822 1.87886 1.20842 1.26348 1.94829 1.22389 0.93659 0.83613 0.94371 1.22187 1.01506 0.99804 0.98589 1.23573 0.95859 1.01233 0.97647 1.23190 0.92460 0.94134 0.94782 0.93146 1.62259 1.01924 1.47330 1.12628 1.22341 0.90856 0.97028 1.01541 1.20592 0.97730 0.94628 0.87054 1.19220 0.97310 0.94141 1.08219 1.20679 0.94770 0.97143 0.98649 1.21142 1.00100 0.93705 1.05680 1.17927 0.91259 0.93209 0.89708 1.19794 1.18428 0.96699 1.18586 0.90920 1.26720 1.00135 0.97100 0.93892 1.69892 1.34408 1.24800 1.16457 0.85252 0.77001 0.78501 0.79308 1.18725 1.19103 1.18312 1.21169 0.96057 0.98140 1.10713 1.20593 0.98239 0.92399 0.97670 1.21963 0.92656 0.97164 0.93431 1.21430 1.00712 0.94737 0.99795 1.21569 0.99885 0.96019 1.00845 0.88662 0.93945 0.92463 0.91347 0.91151 0.90537 0.91589 0.88576 0.90310 0.92840 0.96598 0.90633 0.96143 0.88639 0.88964 0.90323 0.88793 0.86859 0.92482 0.91677 0.92317 0.93109 0.91823 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.35 113.37 1.17 1.49 16 2 O -0.38 -7.89 9.52 -148.98 -1.42 -9.31 16 3 C 0.10 1.97 1.08 -10.27 -0.01 1.96 16 4 C -0.16 -2.56 8.08 71.98 0.58 -1.97 16 5 C -0.15 -3.26 5.94 31.12 0.18 -3.07 16 6 C 0.06 1.60 2.55 45.44 0.12 1.71 16 7 H 0.05 1.41 8.01 -2.38 -0.02 1.40 16 8 N -0.52 -15.56 3.91 -898.51 -3.51 -19.08 16 9 C 0.03 0.92 8.52 127.69 1.09 2.01 16 10 C 0.13 4.32 5.04 85.56 0.43 4.75 16 11 C -0.19 -7.91 4.90 -19.68 -0.10 -8.00 16 12 C -0.09 -4.36 8.00 22.22 0.18 -4.19 16 13 C -0.19 -10.03 8.68 22.73 0.20 -9.84 16 14 C 0.08 4.49 5.55 -21.29 -0.12 4.38 16 15 C -0.51 -28.06 9.04 23.46 0.21 -27.85 16 16 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 17 C 0.04 1.86 5.11 85.26 0.44 2.29 16 18 N -0.83 -44.66 11.11 21.83 0.24 -44.42 16 19 Si 0.98 39.23 29.60 68.60 2.03 41.26 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 C -0.24 -12.08 9.80 22.73 0.22 -11.86 16 24 C -0.07 -3.09 9.67 22.22 0.21 -2.88 16 25 C -0.05 -1.11 0.68 -51.65 -0.04 -1.15 16 26 C -0.11 -2.32 7.16 71.98 0.52 -1.81 16 27 C -0.13 -2.58 8.57 71.98 0.62 -1.96 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.60 7.89 -2.39 -0.02 0.58 16 30 H 0.06 0.68 6.36 -2.38 -0.02 0.67 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.93 6.18 -2.38 -0.01 0.92 16 33 H 0.08 1.19 6.65 -2.39 -0.02 1.17 16 34 H 0.07 1.46 7.92 -2.39 -0.02 1.44 16 35 H 0.10 2.23 7.44 -2.39 -0.02 2.21 16 36 H 0.08 2.08 5.03 -2.39 -0.01 2.07 16 37 H 0.05 1.90 6.34 -2.39 -0.02 1.89 16 38 H 0.02 0.47 8.12 -2.39 -0.02 0.45 16 39 H 0.08 2.40 7.31 -2.39 -0.02 2.38 16 40 H 0.02 0.70 8.04 -2.39 -0.02 0.69 16 41 H 0.10 4.10 8.04 -2.91 -0.02 4.08 16 42 H 0.09 5.23 6.33 -2.91 -0.02 5.21 16 43 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 44 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 45 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.06 1.37 6.11 -2.39 -0.01 1.35 16 47 H 0.06 1.14 8.12 -2.39 -0.02 1.12 16 48 H 0.06 1.31 6.35 -2.39 -0.02 1.29 16 49 H 0.05 1.13 7.59 -2.39 -0.02 1.11 16 50 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.05 1.09 7.21 -2.39 -0.02 1.07 16 Total: -1.00 -59.89 385.96 4.14 -55.75 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.89 Total: 31.78 kcal Atomic # 6 Polarization: -61.89 SS G_CDS: 5.91 Total: -55.98 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -3.27 Total: -63.50 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.42 Total: -9.31 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -59.89 4.14 -55.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343535923.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.822 kcal (2) G-P(sol) polarization free energy of solvation -59.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds