Wall clock time and date at job start Tue Mar 31 2020 11:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00271 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00058 * 12 11 10 14 14 C 1.52996 * 109.47165 * 60.00080 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99890 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00362 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47177 * 89.99898 * 20 18 16 22 22 H 1.48505 * 109.47036 * 210.00183 * 20 18 16 23 23 H 1.48499 * 109.46776 * 329.99672 * 20 18 16 24 24 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 25 25 C 1.50699 * 120.00166 * 179.72002 * 24 5 4 26 26 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 28 28 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 29 29 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 33 33 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 36 36 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47245 * 300.00900 * 11 10 8 38 38 H 1.09002 * 109.47021 * 60.00278 * 11 10 8 39 39 H 1.09000 * 109.46986 * 59.99882 * 13 12 11 40 40 H 1.08996 * 109.47407 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47070 * 300.00053 * 13 12 11 42 42 H 1.09001 * 109.46997 * 59.99740 * 14 12 11 43 43 H 1.09000 * 109.47380 * 179.97438 * 14 12 11 44 44 H 1.08999 * 109.47631 * 300.00497 * 14 12 11 45 45 H 1.09001 * 109.47289 * 299.99925 * 15 12 11 46 46 H 1.09002 * 109.47153 * 60.00008 * 15 12 11 47 47 H 0.96994 * 119.99814 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.46714 * 89.99954 * 25 24 5 49 49 H 1.09001 * 109.47281 * 210.00054 * 25 24 5 50 50 H 1.09001 * 109.47263 * 330.00636 * 25 24 5 51 51 H 1.07998 * 120.00511 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1248 -1.4366 9 8 8.4021 -0.0333 -0.3902 10 7 8.4696 -0.2268 -2.5993 11 6 9.9345 -0.2256 -2.5994 12 6 10.4445 -0.3514 -4.0364 13 6 9.9356 -1.6593 -4.6456 14 6 9.9335 0.8295 -4.8641 15 6 11.9745 -0.3507 -4.0365 16 6 12.4769 -0.4739 -5.4519 17 1 11.7751 -0.5460 -6.2696 18 6 13.8324 -0.4958 -5.7029 19 7 14.2708 -0.6038 -6.9381 20 14 15.0463 -0.3733 -4.2884 21 1 15.3679 -1.7357 -3.7927 22 1 16.2897 0.2885 -4.7589 23 1 14.4464 0.4247 -3.1890 24 6 3.5807 -1.1969 -0.0053 25 6 4.3342 -2.5019 -0.0117 26 6 2.1980 -1.1969 -0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1326 -0.0004 31 1 4.1203 2.1328 0.0010 32 1 6.1421 -0.8417 0.5900 33 1 6.1420 0.9316 0.4349 34 1 5.9254 -1.0569 -1.8708 35 1 5.9253 0.7163 -2.0259 36 1 7.9845 -0.3004 -3.4361 37 1 10.2971 0.7063 -2.1657 38 1 10.2986 -1.0667 -2.0094 39 1 8.8456 -1.6602 -4.6455 40 1 10.2985 -1.7487 -5.6695 41 1 10.2997 -2.5007 -4.0559 42 1 10.2961 1.7614 -4.4301 43 1 10.2972 0.7402 -5.8877 44 1 8.8435 0.8288 -4.8640 45 1 12.3375 0.5809 -3.6024 46 1 12.3382 -1.1923 -3.4469 47 1 15.2245 -0.6188 -7.1147 48 1 4.5158 -2.8215 1.0145 49 1 3.7451 -3.2591 -0.5292 50 1 5.2867 -2.3691 -0.5248 51 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345879797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:44 Heat of formation + Delta-G solvation = -54.652968 kcal Electronic energy + Delta-G solvation = -25948.907694 eV Core-core repulsion = 22425.451138 eV Total energy + Delta-G solvation = -3523.456556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.21640 -39.48627 -37.29093 -35.07566 -33.63816 -32.70607 -32.13425 -31.41434 -28.07566 -27.58039 -27.34013 -26.57294 -25.95960 -23.69535 -22.40550 -22.10288 -20.32842 -20.07647 -18.26684 -17.09063 -16.79117 -16.43676 -15.82149 -15.56783 -15.36809 -15.00596 -14.40986 -14.18588 -14.11618 -13.75108 -13.54854 -13.42911 -13.38187 -13.25729 -12.82627 -12.71504 -12.67432 -12.48663 -12.29468 -12.26773 -12.19138 -11.61223 -11.42533 -11.25122 -11.13535 -11.09880 -11.01412 -10.98079 -10.62924 -10.49945 -9.98281 -9.91352 -9.74761 -9.44042 -9.00758 -8.99442 -8.79977 -8.63726 -8.54370 -6.05120 -4.02422 1.06176 1.14191 2.76807 3.30820 3.31737 3.38998 3.43088 3.52328 4.44893 4.46561 4.49027 4.63378 4.69640 4.82115 4.86267 4.99301 5.06219 5.15064 5.23921 5.26989 5.27488 5.34212 5.38276 5.41099 5.46274 5.51521 5.52413 5.62504 5.62745 5.68036 5.82922 5.95539 6.05757 6.09752 6.11201 6.17889 6.22228 6.30427 6.32686 6.45532 6.48021 6.58144 6.69224 6.78528 6.89526 7.00207 7.03913 7.19217 7.35675 7.66969 7.79004 8.37281 8.52055 8.98820 9.57579 11.07543 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.002042 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.538885 B =13706.482081 C =13834.221864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.108 4.108 5 C -0.087 4.087 6 C -0.065 4.065 7 C -0.136 4.136 8 C 0.506 3.494 9 O -0.548 6.548 10 N -0.722 5.722 11 C 0.125 3.875 12 C -0.063 4.063 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.002 4.002 16 C -0.511 4.511 17 H 0.078 0.922 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.875 3.125 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.265 1.265 24 C -0.077 4.077 25 C -0.121 4.121 26 C -0.120 4.120 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.399 0.601 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.031 0.969 45 H 0.018 0.982 46 H 0.013 0.987 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.774 0.272 12.826 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.087 4.087 6 C -0.102 4.102 7 C -0.176 4.176 8 C 0.292 3.708 9 O -0.426 6.426 10 N -0.374 5.374 11 C 0.002 3.998 12 C -0.064 4.064 13 C -0.186 4.186 14 C -0.186 4.186 15 C -0.040 4.040 16 C -0.549 4.549 17 H 0.096 0.904 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.190 1.190 24 C -0.077 4.077 25 C -0.178 4.178 26 C -0.138 4.138 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.235 0.765 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.050 0.950 45 H 0.036 0.964 46 H 0.032 0.968 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.090 0.910 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.153 0.326 13.463 29.416 hybrid contribution 0.574 0.065 0.189 0.608 sum -25.579 0.392 13.652 28.996 Atomic orbital electron populations 1.20781 0.91351 1.02636 1.02265 1.19888 0.95949 0.93214 0.99932 1.20991 0.94164 0.97439 1.01756 1.21066 0.94098 0.97609 0.99844 1.19780 0.95526 0.92650 1.00711 1.20315 0.89853 1.04458 0.95594 1.21673 0.92316 1.04531 0.99101 1.20639 0.89918 0.76332 0.83879 1.90693 1.70547 1.49806 1.31513 1.46207 1.08336 1.74023 1.08815 1.21624 0.78078 1.01642 0.98431 1.20690 0.98611 0.95720 0.91364 1.21777 0.97662 0.96443 1.02723 1.21772 0.97651 0.97261 1.01910 1.19590 0.89447 0.96556 0.98394 1.21078 0.92332 1.49976 0.91506 0.90401 1.25006 0.98462 0.94738 0.95280 1.69900 1.14390 1.51059 1.18911 0.86854 0.80906 0.78642 0.83344 1.20379 1.21497 1.19001 1.19791 0.93568 0.94977 0.99331 1.20900 1.00338 0.93914 1.02615 1.20889 0.93435 0.97504 1.02015 0.91235 0.91672 0.91644 0.86256 0.85973 0.90006 0.90248 0.88903 0.88902 0.76520 0.91909 0.91899 0.94999 0.90881 0.93421 0.93423 0.90873 0.94988 0.96384 0.96830 0.92795 0.91016 0.91543 0.90956 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.73 5.88 -104.63 -0.62 -1.34 16 3 C -0.13 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.97 9.68 -39.58 -0.38 -1.35 16 5 C -0.09 -0.82 5.13 -104.62 -0.54 -1.36 16 6 C -0.06 -0.65 3.94 -27.88 -0.11 -0.76 16 7 C -0.14 -1.32 5.49 -27.88 -0.15 -1.47 16 8 C 0.51 6.89 7.83 -10.98 -0.09 6.80 16 9 O -0.55 -9.60 15.98 5.56 0.09 -9.51 16 10 N -0.72 -9.71 4.96 -60.30 -0.30 -10.01 16 11 C 0.13 2.08 4.56 -4.05 -0.02 2.06 16 12 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 13 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 14 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 15 C 0.00 -0.05 3.11 -27.89 -0.09 -0.13 16 16 C -0.51 -13.62 8.20 -34.44 -0.28 -13.91 16 17 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 20 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.08 -0.69 5.88 -104.62 -0.62 -1.31 16 25 C -0.12 -0.93 9.22 36.00 0.33 -0.60 16 26 C -0.12 -1.01 9.36 -39.58 -0.37 -1.38 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.08 0.88 6.96 -51.93 -0.36 0.52 16 33 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 34 H 0.09 0.77 6.88 -51.93 -0.36 0.41 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.52 6.16 -40.82 -0.25 4.27 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 46 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 50 H 0.07 0.57 5.40 -51.93 -0.28 0.29 16 51 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 398.03 15.07 6.00 6.00 Total: -1.00 -31.55 398.03 -9.44 -40.99 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.80 Total: 1.77 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.53 Total: -19.71 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.47 Total: -36.37 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.55 -9.44 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345879797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.664 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds