Wall clock time and date at job start Tue Mar 31 2020 11:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00271 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47415 * 300.00058 * 12 11 10 14 14 C 1.52996 * 109.47165 * 60.00080 * 12 11 10 15 15 C 1.52997 * 109.47232 * 180.02562 * 12 11 10 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 12 11 17 17 H 1.08001 * 119.99890 * 359.97438 * 16 15 12 18 18 C 1.37876 * 120.00428 * 180.02562 * 16 15 12 19 19 N 1.31517 * 120.00362 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47177 * 89.99898 * 20 18 16 22 22 H 1.48505 * 109.47036 * 210.00183 * 20 18 16 23 23 H 1.48499 * 109.46776 * 329.99672 * 20 18 16 24 24 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 25 25 C 1.50699 * 120.00166 * 179.72002 * 24 5 4 26 26 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 28 28 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 29 29 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 30 30 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 31 31 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 33 33 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 36 36 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 37 37 H 1.08998 * 109.47245 * 300.00900 * 11 10 8 38 38 H 1.09002 * 109.47021 * 60.00278 * 11 10 8 39 39 H 1.09000 * 109.46986 * 59.99882 * 13 12 11 40 40 H 1.08996 * 109.47407 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47070 * 300.00053 * 13 12 11 42 42 H 1.09001 * 109.46997 * 59.99740 * 14 12 11 43 43 H 1.09000 * 109.47380 * 179.97438 * 14 12 11 44 44 H 1.08999 * 109.47631 * 300.00497 * 14 12 11 45 45 H 1.09001 * 109.47289 * 299.99925 * 15 12 11 46 46 H 1.09002 * 109.47153 * 60.00008 * 15 12 11 47 47 H 0.96994 * 119.99814 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.46714 * 89.99954 * 25 24 5 49 49 H 1.09001 * 109.47281 * 210.00054 * 25 24 5 50 50 H 1.09001 * 109.47263 * 330.00636 * 25 24 5 51 51 H 1.07998 * 120.00511 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1248 -1.4366 9 8 8.4021 -0.0333 -0.3902 10 7 8.4696 -0.2268 -2.5993 11 6 9.9345 -0.2256 -2.5994 12 6 10.4445 -0.3514 -4.0364 13 6 9.9356 -1.6593 -4.6456 14 6 9.9335 0.8295 -4.8641 15 6 11.9745 -0.3507 -4.0365 16 6 12.4769 -0.4739 -5.4519 17 1 11.7751 -0.5460 -6.2696 18 6 13.8324 -0.4958 -5.7029 19 7 14.2708 -0.6038 -6.9381 20 14 15.0463 -0.3733 -4.2884 21 1 15.3679 -1.7357 -3.7927 22 1 16.2897 0.2885 -4.7589 23 1 14.4464 0.4247 -3.1890 24 6 3.5807 -1.1969 -0.0053 25 6 4.3342 -2.5019 -0.0117 26 6 2.1980 -1.1969 -0.0005 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8899 0.5139 30 1 1.6582 2.1326 -0.0004 31 1 4.1203 2.1328 0.0010 32 1 6.1421 -0.8417 0.5900 33 1 6.1420 0.9316 0.4349 34 1 5.9254 -1.0569 -1.8708 35 1 5.9253 0.7163 -2.0259 36 1 7.9845 -0.3004 -3.4361 37 1 10.2971 0.7063 -2.1657 38 1 10.2986 -1.0667 -2.0094 39 1 8.8456 -1.6602 -4.6455 40 1 10.2985 -1.7487 -5.6695 41 1 10.2997 -2.5007 -4.0559 42 1 10.2961 1.7614 -4.4301 43 1 10.2972 0.7402 -5.8877 44 1 8.8435 0.8288 -4.8640 45 1 12.3375 0.5809 -3.6024 46 1 12.3382 -1.1923 -3.4469 47 1 15.2245 -0.6188 -7.1147 48 1 4.5158 -2.8215 1.0145 49 1 3.7451 -3.2591 -0.5292 50 1 5.2867 -2.3691 -0.5248 51 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345879797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:43 Heat of formation + Delta-G solvation = -71.072593 kcal Electronic energy + Delta-G solvation = -25949.619703 eV Core-core repulsion = 22425.451138 eV Total energy + Delta-G solvation = -3524.168564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09270 -40.40443 -38.72037 -35.77078 -35.18028 -33.98817 -33.32105 -32.12771 -29.78890 -28.52344 -27.99217 -27.98514 -27.06175 -24.82077 -23.77340 -22.88823 -21.34705 -20.80109 -19.74733 -18.90635 -18.06403 -17.18148 -16.84184 -16.53142 -16.34725 -16.13715 -15.63810 -15.40217 -15.27810 -15.02057 -14.63814 -14.38948 -14.21422 -14.14654 -14.01482 -13.94892 -13.72267 -13.48598 -13.20992 -13.14434 -12.91797 -12.84164 -12.80793 -12.60035 -12.30521 -12.22441 -12.16406 -12.08697 -11.77949 -11.73565 -11.65011 -11.51564 -11.29080 -10.93616 -10.78611 -10.71119 -10.01472 -9.61334 -9.26600 -8.23009 -6.23030 0.43467 0.52306 1.34975 1.37814 1.47778 1.69959 2.28723 2.38271 2.83917 3.12251 3.70619 3.88976 3.93052 4.03263 4.05335 4.07206 4.08997 4.16782 4.19084 4.33907 4.49459 4.52728 4.63512 4.64986 4.71359 4.72381 4.80585 4.81029 4.84680 4.86910 4.95319 4.98639 5.02254 5.02912 5.06768 5.09629 5.19535 5.29852 5.34067 5.37501 5.40591 5.42353 5.50906 5.57132 5.60276 5.69552 5.74582 5.76500 5.81004 6.18748 6.37457 6.62842 6.83858 7.31380 7.39672 8.92441 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.002042 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.538885 B =13706.482081 C =13834.221864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.118 4.118 5 C -0.099 4.099 6 C -0.058 4.058 7 C -0.125 4.125 8 C 0.507 3.493 9 O -0.589 6.589 10 N -0.713 5.713 11 C 0.138 3.862 12 C -0.059 4.059 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.004 4.004 16 C -0.502 4.502 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.934 3.066 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.253 1.253 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.130 4.130 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.413 0.587 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.013 0.987 46 H 0.012 0.988 47 H 0.262 0.738 48 H 0.071 0.929 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.265 0.256 13.993 32.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.096 4.096 7 C -0.164 4.164 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.365 5.365 11 C 0.014 3.986 12 C -0.059 4.059 13 C -0.181 4.181 14 C -0.181 4.181 15 C -0.042 4.042 16 C -0.540 4.540 17 H 0.071 0.929 18 C -0.192 4.192 19 N -0.592 5.592 20 Si 0.759 3.241 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.177 1.177 24 C -0.086 4.086 25 C -0.177 4.177 26 C -0.148 4.148 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.251 0.749 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.089 0.911 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.087 0.913 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.679 0.308 14.622 32.193 hybrid contribution 1.246 0.072 -0.192 1.263 sum -27.432 0.381 14.430 30.999 Atomic orbital electron populations 1.20821 0.89713 1.03443 1.02948 1.20232 0.97308 0.93063 0.99015 1.21246 0.94093 0.98355 1.01579 1.21244 0.94646 0.97804 0.99928 1.19753 0.94973 0.93203 1.01956 1.20197 0.90469 1.03321 0.95602 1.21661 0.88960 1.06407 0.99374 1.21283 0.91369 0.74869 0.82937 1.90684 1.71698 1.51593 1.33003 1.46044 1.06933 1.73868 1.09699 1.21243 0.80053 1.00739 0.96585 1.20558 0.95598 0.96877 0.92889 1.21707 1.00117 0.95621 1.00677 1.21704 1.00091 0.96527 0.99803 1.19570 0.93007 0.96054 0.95547 1.21371 0.91836 1.47830 0.92942 0.92915 1.25840 1.00661 0.95134 0.97530 1.70038 1.14724 1.53367 1.21045 0.85897 0.78593 0.78978 0.80605 1.19717 1.21444 1.17670 1.19984 0.94073 0.95247 0.99308 1.20912 1.00220 0.93765 1.02789 1.21139 0.93392 0.98380 1.01919 0.90510 0.90905 0.90868 0.84735 0.85298 0.91157 0.91458 0.86859 0.86881 0.74922 0.92980 0.92827 0.91111 0.93651 0.93695 0.93793 0.93627 0.91117 0.96838 0.96936 0.92868 0.90997 0.90301 0.91316 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 71.24 0.71 -0.29 16 2 C -0.10 -1.36 5.88 -19.87 -0.12 -1.48 16 3 C -0.13 -1.98 9.70 22.27 0.22 -1.77 16 4 C -0.12 -1.94 9.68 22.27 0.22 -1.72 16 5 C -0.10 -1.73 5.13 -19.86 -0.10 -1.83 16 6 C -0.06 -1.10 3.94 29.85 0.12 -0.98 16 7 C -0.12 -2.10 5.49 29.85 0.16 -1.93 16 8 C 0.51 12.77 7.83 87.66 0.69 13.45 16 9 O -0.59 -20.13 15.98 -3.02 -0.05 -20.18 16 10 N -0.71 -17.28 4.96 -463.07 -2.30 -19.58 16 11 C 0.14 4.35 4.56 86.38 0.39 4.74 16 12 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 13 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 14 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 15 C 0.00 -0.17 3.11 29.85 0.09 -0.08 16 16 C -0.50 -27.21 8.20 25.60 0.21 -27.00 16 17 H 0.05 3.07 5.92 -2.91 -0.02 3.06 16 18 C 0.00 0.26 5.47 84.65 0.46 0.73 16 19 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 20 Si 0.93 44.56 27.47 68.60 1.88 46.45 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 24 C -0.09 -1.40 5.88 -19.87 -0.12 -1.52 16 25 C -0.12 -1.64 9.22 71.24 0.66 -0.98 16 26 C -0.13 -1.93 9.36 22.27 0.21 -1.72 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 29 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 30 H 0.13 1.47 8.06 -2.91 -0.02 1.44 16 31 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.07 1.47 6.96 -2.39 -0.02 1.46 16 33 H 0.07 1.41 8.01 -2.39 -0.02 1.39 16 34 H 0.11 1.50 6.88 -2.39 -0.02 1.49 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 7.75 6.16 -92.70 -0.57 7.18 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 40 H 0.04 1.73 6.62 -2.39 -0.02 1.72 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 44 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 45 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 46 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 47 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 50 H 0.07 0.97 5.40 -2.39 -0.01 0.95 16 51 H 0.13 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -69.57 398.03 5.05 -64.52 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.28 Total: 18.45 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.93 Total: -31.42 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.00 Total: -77.83 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.05 Total: -20.18 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -69.57 5.05 -64.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345879797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.550 kcal (2) G-P(sol) polarization free energy of solvation -69.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds