Wall clock time and date at job start Tue Mar 31 2020 11:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38232 * 119.99817 * 2 1 4 4 C 1.38238 * 120.00117 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.99796 * 359.95715 * 4 3 2 6 6 C 1.50700 * 120.00096 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47159 * 89.99909 * 6 5 4 8 8 H 1.09004 * 109.46832 * 55.00168 * 7 6 5 9 9 C 1.53002 * 109.47274 * 295.00488 * 7 6 5 10 10 C 1.50696 * 109.47353 * 175.00036 * 7 6 5 11 11 O 1.21284 * 120.00096 * 0.02562 * 10 7 6 12 12 N 1.34774 * 119.99838 * 180.02562 * 10 7 6 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 7 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46817 * 299.99814 * 14 13 12 16 16 C 1.52997 * 109.47232 * 60.00053 * 14 13 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47130 * 179.97438 * 17 14 13 19 19 H 1.07994 * 120.00100 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99709 * 179.97438 * 18 17 14 21 21 N 1.31511 * 119.99896 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47454 * 60.00119 * 22 20 18 24 24 H 1.48496 * 109.46966 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46926 * 299.99910 * 22 20 18 26 26 C 1.38234 * 120.00303 * 0.27628 * 5 4 3 27 27 C 1.38235 * 119.99957 * 359.51397 * 26 5 4 28 28 H 1.09008 * 109.46814 * 90.00237 * 1 2 3 29 29 H 1.08997 * 109.47178 * 209.99618 * 1 2 3 30 30 H 1.08996 * 109.47573 * 330.00171 * 1 2 3 31 31 H 1.08000 * 120.00310 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99748 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47463 * 330.00665 * 6 5 4 34 34 H 1.08996 * 109.47974 * 209.99681 * 6 5 4 35 35 H 1.09000 * 109.47312 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46930 * 299.99620 * 9 7 6 37 37 H 1.09002 * 109.47067 * 59.99538 * 9 7 6 38 38 H 0.97001 * 120.00676 * 359.97438 * 12 10 7 39 39 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 40 40 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 41 41 H 1.09002 * 109.47070 * 60.00180 * 15 14 13 42 42 H 1.09000 * 109.46986 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.47407 * 299.99780 * 15 14 13 44 44 H 1.08998 * 109.47624 * 59.99682 * 16 14 13 45 45 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.46777 * 299.99578 * 16 14 13 47 47 H 1.09001 * 109.46997 * 299.99574 * 17 14 13 48 48 H 1.09004 * 109.47298 * 59.99717 * 17 14 13 49 49 H 0.97007 * 119.99539 * 179.97438 * 21 20 18 50 50 H 1.08001 * 120.00224 * 179.72541 * 26 5 4 51 51 H 1.07993 * 120.00726 * 180.25173 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0020 6 6 5.7787 0.0001 0.0020 7 6 6.2887 0.0019 1.4445 8 1 5.8541 -0.8393 1.9845 9 6 5.8838 1.3100 2.1271 10 6 7.7906 -0.1219 1.4465 11 8 8.3938 -0.2031 0.3974 12 7 8.4634 -0.1425 2.6141 13 6 9.9236 -0.2623 2.6161 14 6 10.4334 -0.2620 4.0586 15 6 10.0280 1.0454 4.7424 16 6 9.8237 -1.4437 4.8153 17 6 11.9583 -0.3864 4.0606 18 6 12.4605 -0.3855 5.4815 19 1 11.7619 -0.3046 6.3011 20 6 13.8119 -0.4889 5.7351 21 7 14.6625 -0.5878 4.7370 22 14 14.4343 -0.4884 7.4963 23 1 13.8427 -1.6355 8.2308 24 1 15.9144 -0.6091 7.4982 25 1 14.0407 0.7804 8.1600 26 6 3.5806 -1.1971 -0.0029 27 6 2.1983 -1.1972 0.0009 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1421 0.8895 -0.5128 34 1 6.1421 -0.8904 -0.5107 35 1 6.2468 1.3111 3.1549 36 1 6.3185 2.1512 1.5870 37 1 4.7975 1.3995 2.1256 38 1 7.9811 -0.0772 3.4532 39 1 10.2124 -1.1938 2.1292 40 1 10.3579 0.5794 2.0766 41 1 8.9417 1.1345 4.7410 42 1 10.3916 1.0458 5.7700 43 1 10.4624 1.8873 4.2034 44 1 10.1124 -2.3751 4.3281 45 1 10.1866 -1.4432 5.8431 46 1 8.7374 -1.3545 4.8139 47 1 12.2474 -1.3176 3.5734 48 1 12.3923 0.4558 3.5216 49 1 15.6132 -0.6602 4.9155 50 1 4.1206 -2.1323 -0.0063 51 1 1.6583 -2.1324 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345883857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:56 Heat of formation + Delta-G solvation = -55.629925 kcal Electronic energy + Delta-G solvation = -26134.524894 eV Core-core repulsion = 22611.025974 eV Total energy + Delta-G solvation = -3523.498920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.20618 -39.38769 -37.22011 -35.35545 -33.64895 -32.49995 -31.88842 -31.16938 -28.58534 -27.13291 -26.52333 -26.32214 -25.64750 -23.51370 -22.91568 -22.26016 -20.82630 -19.76999 -18.23989 -17.06790 -16.38473 -16.00218 -15.85441 -15.58012 -15.25108 -15.18261 -14.52786 -14.18835 -14.14286 -13.82552 -13.66212 -13.47350 -13.15301 -12.96983 -12.80532 -12.71616 -12.53824 -12.24720 -12.18187 -12.05683 -12.03934 -11.37587 -11.26085 -11.19008 -11.14403 -11.01605 -11.00235 -10.87597 -10.63721 -10.40549 -10.27283 -9.88080 -9.67676 -9.17032 -9.12638 -8.93866 -8.70017 -8.68683 -8.36156 -6.00230 -4.01663 1.08097 1.17041 2.84213 3.31544 3.36155 3.37099 3.39189 3.58227 4.44487 4.51488 4.53917 4.66442 4.71533 4.79088 4.81128 4.99258 5.02503 5.22823 5.24705 5.30496 5.35038 5.39479 5.46954 5.51413 5.58252 5.60008 5.62420 5.67275 5.74629 5.84601 5.86658 5.99686 6.05129 6.16377 6.19194 6.22244 6.29381 6.34515 6.38885 6.45570 6.57488 6.61994 6.77041 6.78903 7.05560 7.06558 7.12328 7.63303 7.75887 7.77154 7.98271 8.39508 8.46096 9.02858 9.61319 11.11099 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.002033 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.751125 B =13772.610513 C =13989.137659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.081 4.081 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.095 0.905 9 C -0.147 4.147 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.720 5.720 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.890 3.110 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.113 4.113 27 C -0.119 4.119 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.260 0.740 50 H 0.122 0.878 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.232 2.044 -7.468 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.138 4.138 4 C -0.129 4.129 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.126 4.126 8 H 0.113 0.887 9 C -0.204 4.204 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.372 5.372 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.131 4.131 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.140 0.860 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.578 1.968 -8.255 27.900 hybrid contribution 0.321 -0.022 1.391 1.428 sum -26.257 1.946 -6.864 27.209 Atomic orbital electron populations 1.20782 0.91401 1.02672 1.02198 1.19911 0.95969 0.93302 1.00288 1.21018 0.94193 0.97443 1.01194 1.21084 0.94015 0.97730 1.00028 1.19904 0.95599 0.93153 0.99438 1.20405 0.89883 1.04514 0.95161 1.21261 0.92489 1.00687 0.98142 0.88667 1.21863 1.02325 0.95829 1.00391 1.20549 0.89522 0.76333 0.83986 1.90693 1.70335 1.49901 1.31485 1.46220 1.08886 1.73839 1.08211 1.21621 0.77804 1.01583 0.98518 1.20904 1.00173 0.95102 0.91147 1.21759 0.97676 0.96889 1.02075 1.21759 0.97120 0.97719 1.01821 1.19084 0.86199 0.97395 0.97427 1.21145 0.91678 1.50003 0.92209 0.92323 1.25020 0.97189 0.95557 0.96766 1.69957 1.02420 1.50321 1.30638 0.86701 0.77695 0.78488 0.85345 1.20339 1.21405 1.20343 1.21085 0.94093 0.97770 1.00109 1.21015 0.94172 0.97462 1.01081 0.91326 0.91646 0.91646 0.86252 0.85976 0.90246 0.90038 0.92055 0.91987 0.91214 0.76690 0.91887 0.91879 0.95270 0.91446 0.93377 0.93372 0.91443 0.95271 0.96368 0.96362 0.92986 0.86012 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.09 -0.75 5.88 -104.62 -0.62 -1.37 16 3 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 4 C -0.11 -0.96 7.96 -39.58 -0.32 -1.27 16 5 C -0.08 -0.76 4.71 -104.63 -0.49 -1.25 16 6 C -0.06 -0.65 4.19 -27.88 -0.12 -0.77 16 7 C -0.10 -1.09 2.71 -91.77 -0.25 -1.34 16 8 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.15 -1.31 8.66 37.16 0.32 -0.99 16 10 C 0.51 7.39 7.15 -10.99 -0.08 7.31 16 11 O -0.55 -10.08 15.92 5.55 0.09 -9.99 16 12 N -0.72 -10.28 4.85 -60.29 -0.29 -10.57 16 13 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 16 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 17 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 18 C -0.51 -13.56 7.65 -34.44 -0.26 -13.82 16 19 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 27 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 28 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.93 8.04 -52.49 -0.42 0.50 16 33 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 35 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.56 6.27 -51.93 -0.33 0.23 16 38 H 0.40 4.82 5.58 -40.82 -0.23 4.59 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 51 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 401.66 15.07 6.05 6.05 Total: -1.00 -31.02 401.66 -9.69 -40.72 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.94 Total: 2.00 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.31 Total: -18.71 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.44 Total: -36.22 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.02 -9.69 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.911 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds