Wall clock time and date at job start Tue Mar 31 2020 11:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38232 * 119.99817 * 2 1 4 4 C 1.38238 * 120.00117 * 179.97438 * 3 2 1 5 5 C 1.38229 * 119.99796 * 359.95715 * 4 3 2 6 6 C 1.50700 * 120.00096 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47159 * 89.99909 * 6 5 4 8 8 H 1.09004 * 109.46832 * 55.00168 * 7 6 5 9 9 C 1.53002 * 109.47274 * 295.00488 * 7 6 5 10 10 C 1.50696 * 109.47353 * 175.00036 * 7 6 5 11 11 O 1.21284 * 120.00096 * 0.02562 * 10 7 6 12 12 N 1.34774 * 119.99838 * 180.02562 * 10 7 6 13 13 C 1.46506 * 120.00072 * 180.02562 * 12 10 7 14 14 C 1.52997 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.46817 * 299.99814 * 14 13 12 16 16 C 1.52997 * 109.47232 * 60.00053 * 14 13 12 17 17 C 1.52996 * 109.47131 * 180.02562 * 14 13 12 18 18 C 1.50703 * 109.47130 * 179.97438 * 17 14 13 19 19 H 1.07994 * 120.00100 * 0.02562 * 18 17 14 20 20 C 1.37884 * 119.99709 * 179.97438 * 18 17 14 21 21 N 1.31511 * 119.99896 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99699 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47454 * 60.00119 * 22 20 18 24 24 H 1.48496 * 109.46966 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46926 * 299.99910 * 22 20 18 26 26 C 1.38234 * 120.00303 * 0.27628 * 5 4 3 27 27 C 1.38235 * 119.99957 * 359.51397 * 26 5 4 28 28 H 1.09008 * 109.46814 * 90.00237 * 1 2 3 29 29 H 1.08997 * 109.47178 * 209.99618 * 1 2 3 30 30 H 1.08996 * 109.47573 * 330.00171 * 1 2 3 31 31 H 1.08000 * 120.00310 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99748 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47463 * 330.00665 * 6 5 4 34 34 H 1.08996 * 109.47974 * 209.99681 * 6 5 4 35 35 H 1.09000 * 109.47312 * 179.97438 * 9 7 6 36 36 H 1.09004 * 109.46930 * 299.99620 * 9 7 6 37 37 H 1.09002 * 109.47067 * 59.99538 * 9 7 6 38 38 H 0.97001 * 120.00676 * 359.97438 * 12 10 7 39 39 H 1.09001 * 109.47060 * 300.00359 * 13 12 10 40 40 H 1.09004 * 109.47073 * 59.99848 * 13 12 10 41 41 H 1.09002 * 109.47070 * 60.00180 * 15 14 13 42 42 H 1.09000 * 109.46986 * 180.02562 * 15 14 13 43 43 H 1.08996 * 109.47407 * 299.99780 * 15 14 13 44 44 H 1.08998 * 109.47624 * 59.99682 * 16 14 13 45 45 H 1.09000 * 109.47140 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.46777 * 299.99578 * 16 14 13 47 47 H 1.09001 * 109.46997 * 299.99574 * 17 14 13 48 48 H 1.09004 * 109.47298 * 59.99717 * 17 14 13 49 49 H 0.97007 * 119.99539 * 179.97438 * 21 20 18 50 50 H 1.08001 * 120.00224 * 179.72541 * 26 5 4 51 51 H 1.07993 * 120.00726 * 180.25173 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 0.0020 6 6 5.7787 0.0001 0.0020 7 6 6.2887 0.0019 1.4445 8 1 5.8541 -0.8393 1.9845 9 6 5.8838 1.3100 2.1271 10 6 7.7906 -0.1219 1.4465 11 8 8.3938 -0.2031 0.3974 12 7 8.4634 -0.1425 2.6141 13 6 9.9236 -0.2623 2.6161 14 6 10.4334 -0.2620 4.0586 15 6 10.0280 1.0454 4.7424 16 6 9.8237 -1.4437 4.8153 17 6 11.9583 -0.3864 4.0606 18 6 12.4605 -0.3855 5.4815 19 1 11.7619 -0.3046 6.3011 20 6 13.8119 -0.4889 5.7351 21 7 14.6625 -0.5878 4.7370 22 14 14.4343 -0.4884 7.4963 23 1 13.8427 -1.6355 8.2308 24 1 15.9144 -0.6091 7.4982 25 1 14.0407 0.7804 8.1600 26 6 3.5806 -1.1971 -0.0029 27 6 2.1983 -1.1972 0.0009 28 1 -0.3633 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1421 0.8895 -0.5128 34 1 6.1421 -0.8904 -0.5107 35 1 6.2468 1.3111 3.1549 36 1 6.3185 2.1512 1.5870 37 1 4.7975 1.3995 2.1256 38 1 7.9811 -0.0772 3.4532 39 1 10.2124 -1.1938 2.1292 40 1 10.3579 0.5794 2.0766 41 1 8.9417 1.1345 4.7410 42 1 10.3916 1.0458 5.7700 43 1 10.4624 1.8873 4.2034 44 1 10.1124 -2.3751 4.3281 45 1 10.1866 -1.4432 5.8431 46 1 8.7374 -1.3545 4.8139 47 1 12.2474 -1.3176 3.5734 48 1 12.3923 0.4558 3.5216 49 1 15.6132 -0.6602 4.9155 50 1 4.1206 -2.1323 -0.0063 51 1 1.6583 -2.1324 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345883857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:55 Heat of formation + Delta-G solvation = -71.212312 kcal Electronic energy + Delta-G solvation = -26135.200597 eV Core-core repulsion = 22611.025974 eV Total energy + Delta-G solvation = -3524.174623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.23980 -40.23437 -38.72026 -36.20795 -35.25661 -33.99699 -32.93113 -31.77393 -29.38132 -28.97487 -27.96165 -27.65784 -26.39341 -25.09504 -23.70656 -23.35461 -21.58727 -20.88901 -19.73884 -18.37510 -18.15084 -16.93110 -16.81586 -16.61225 -16.42077 -16.21153 -15.89320 -15.38588 -15.15400 -14.85353 -14.60616 -14.49326 -14.30777 -14.21104 -13.94429 -13.92716 -13.59671 -13.39353 -13.18248 -12.89795 -12.82497 -12.76047 -12.74661 -12.57715 -12.32686 -12.22953 -12.08278 -12.01910 -11.99061 -11.83765 -11.69735 -11.53351 -11.12693 -10.89294 -10.65987 -10.50635 -10.04229 -9.75900 -9.32429 -8.13720 -6.21761 0.44903 0.55390 1.42666 1.44831 1.52053 1.66982 2.24188 2.45354 2.88372 3.20432 3.64459 3.87139 3.92459 3.97288 4.06976 4.09428 4.11374 4.21447 4.22546 4.26089 4.42967 4.48901 4.65951 4.69423 4.72184 4.76739 4.81180 4.86309 4.88290 4.91449 4.95318 4.96504 5.03876 5.11029 5.12516 5.18762 5.25124 5.30805 5.35638 5.40870 5.48100 5.50229 5.53915 5.57537 5.58087 5.76685 5.79125 5.80375 5.89822 6.18430 6.30256 6.61151 6.93246 7.29197 7.45907 8.98460 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034065 B = 0.002033 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.751125 B =13772.610513 C =13989.137659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.091 4.091 6 C -0.056 4.056 7 C -0.093 4.093 8 H 0.115 0.885 9 C -0.143 4.143 10 C 0.509 3.491 11 O -0.590 6.590 12 N -0.708 5.708 13 C 0.141 3.859 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.122 4.122 17 C 0.040 3.960 18 C -0.514 4.514 19 H 0.073 0.927 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.960 3.040 23 H -0.266 1.266 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.123 4.123 27 C -0.128 4.128 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.413 0.587 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.070 0.930 47 H -0.016 1.016 48 H -0.015 1.015 49 H 0.259 0.741 50 H 0.126 0.874 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.610 2.479 -5.592 31.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.200 4.200 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.360 5.360 13 C 0.017 3.983 14 C -0.065 4.065 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.552 4.552 19 H 0.091 0.909 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.785 3.215 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.191 1.191 26 C -0.141 4.141 27 C -0.145 4.145 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.155 0.845 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.068 0.932 50 H 0.143 0.857 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -30.002 2.408 -6.346 30.760 hybrid contribution 1.329 -0.165 0.711 1.516 sum -28.673 2.243 -5.635 29.307 Atomic orbital electron populations 1.20825 0.89752 1.03534 1.02862 1.20256 0.97323 0.93134 0.99291 1.21281 0.94054 0.98380 1.00788 1.21222 0.94527 0.97737 0.99948 1.19798 0.94631 0.93819 1.00877 1.20290 0.90961 1.03211 0.94948 1.21248 0.88890 1.02524 0.98698 0.86728 1.21866 1.03202 0.94316 1.00631 1.21311 0.91165 0.74789 0.83017 1.90681 1.71615 1.51717 1.33097 1.46005 1.07181 1.73656 1.09179 1.21193 0.80051 0.99851 0.97239 1.20709 0.96238 0.97185 0.92413 1.21694 1.00334 0.95137 1.00695 1.21696 0.99606 0.96187 1.00413 1.18969 0.90502 0.94230 0.96062 1.21566 0.91988 1.48440 0.93246 0.90871 1.25976 0.97749 0.95486 1.01146 1.70122 1.02602 1.52076 1.33130 0.85576 0.76713 0.79154 0.80050 1.19126 1.21774 1.19116 1.21228 0.94699 0.97836 1.00379 1.21256 0.93980 0.98439 1.00875 0.90675 0.90892 0.90742 0.84527 0.85232 0.91352 0.91642 0.90839 0.92577 0.89842 0.74899 0.93826 0.93782 0.91037 0.92545 0.94486 0.94512 0.92523 0.91087 0.99713 0.99678 0.93207 0.85652 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.24 0.71 -0.25 16 2 C -0.10 -1.36 5.88 -19.87 -0.12 -1.48 16 3 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 4 C -0.12 -1.82 7.96 22.27 0.18 -1.64 16 5 C -0.09 -1.60 4.71 -19.87 -0.09 -1.70 16 6 C -0.06 -1.15 4.19 29.85 0.13 -1.03 16 7 C -0.09 -1.78 2.71 -11.54 -0.03 -1.81 16 8 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 9 C -0.14 -2.16 8.66 71.98 0.62 -1.53 16 10 C 0.51 14.35 7.15 87.66 0.63 14.98 16 11 O -0.59 -22.28 15.92 -3.04 -0.05 -22.32 16 12 N -0.71 -19.14 4.85 -463.05 -2.25 -21.38 16 13 C 0.14 5.05 4.56 86.38 0.39 5.45 16 14 C -0.07 -2.44 0.54 -52.18 -0.03 -2.47 16 15 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 17 C 0.04 2.04 4.04 29.85 0.12 2.16 16 18 C -0.51 -27.54 7.65 25.60 0.20 -27.35 16 19 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 20 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 21 N -0.94 -57.25 13.29 21.45 0.28 -56.97 16 22 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 27 C -0.13 -1.86 9.70 22.27 0.22 -1.65 16 28 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.52 8.08 -2.39 -0.02 0.50 16 30 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 31 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.13 1.75 8.04 -2.91 -0.02 1.72 16 33 H 0.07 1.52 8.09 -2.39 -0.02 1.51 16 34 H 0.06 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.07 0.94 7.57 -2.39 -0.02 0.93 16 36 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 37 H 0.08 1.08 6.27 -2.39 -0.01 1.06 16 38 H 0.41 8.56 5.58 -92.71 -0.52 8.05 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 42 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 46 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 47 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 48 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 49 H 0.26 15.07 8.31 -92.70 -0.77 14.29 16 50 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 51 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -70.01 401.66 5.37 -64.65 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.37 Total: 18.98 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.98 Total: -28.52 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -1.96 Total: -78.35 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.32 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.01 5.37 -64.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.564 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds