Wall clock time and date at job start Tue Mar 31 2020 11:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09003 * 109.47417 * 305.00034 * 7 6 5 9 9 C 1.52998 * 109.47127 * 65.00023 * 7 6 5 10 10 C 1.50703 * 109.46887 * 185.00098 * 7 6 5 11 11 O 1.21276 * 120.00397 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99626 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99655 * 180.02562 * 12 10 7 14 14 C 1.52999 * 109.46915 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46954 * 299.99607 * 14 13 12 16 16 C 1.53004 * 109.47117 * 60.00024 * 14 13 12 17 17 C 1.52997 * 109.47006 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47419 * 179.97438 * 17 14 13 19 19 H 1.08002 * 119.99638 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00412 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99593 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47042 * 120.00016 * 22 20 18 25 25 H 1.48504 * 109.46897 * 240.00038 * 22 20 18 26 26 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 27 27 C 1.38234 * 120.00063 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 29 29 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 30 30 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 33 33 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 34 34 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 35 35 H 1.09002 * 109.47282 * 179.97438 * 9 7 6 36 36 H 1.08997 * 109.47593 * 299.99810 * 9 7 6 37 37 H 1.08998 * 109.47300 * 60.00058 * 9 7 6 38 38 H 0.96995 * 120.00287 * 359.97438 * 12 10 7 39 39 H 1.09003 * 109.46848 * 299.99920 * 13 12 10 40 40 H 1.08997 * 109.47048 * 59.99646 * 13 12 10 41 41 H 1.08997 * 109.47043 * 60.00633 * 15 14 13 42 42 H 1.09002 * 109.46666 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.47298 * 300.00042 * 15 14 13 44 44 H 1.08998 * 109.47564 * 59.99903 * 16 14 13 45 45 H 1.09000 * 109.46969 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.46677 * 299.99906 * 16 14 13 47 47 H 1.09003 * 109.47043 * 300.00242 * 17 14 13 48 48 H 1.08997 * 109.47495 * 59.99788 * 17 14 13 49 49 H 0.97008 * 119.99567 * 179.97438 * 21 20 18 50 50 H 1.08002 * 119.99673 * 179.97438 * 26 5 4 51 51 H 1.08000 * 120.00005 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 0.8378 1.9952 9 6 5.8758 -1.3116 2.1361 10 6 7.7851 0.1209 1.4639 11 8 8.3922 0.2028 0.4172 12 7 8.4536 0.1395 2.6340 13 6 9.9137 0.2604 2.6416 14 6 10.4182 0.2574 4.0860 15 6 9.8048 1.4372 4.8428 16 6 10.0113 -1.0516 4.7656 17 6 11.9429 0.3831 4.0939 18 6 12.4399 0.3808 5.5165 19 1 11.7383 0.2976 6.3334 20 6 13.7903 0.4839 5.7753 21 7 14.6446 0.5837 4.7805 22 14 14.4062 0.4803 7.5389 23 1 13.2526 0.3576 8.4658 24 1 15.3271 -0.6673 7.7392 25 1 15.1285 1.7485 7.8134 26 6 3.5805 -1.1972 0.0000 27 6 2.1981 -1.1972 -0.0058 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0104 33 1 6.1439 -0.8890 -0.5025 34 1 6.1439 0.8909 -0.4990 35 1 6.2356 -1.3139 3.1650 36 1 4.7895 -1.4012 2.1305 37 1 6.3124 -2.1524 1.5971 38 1 7.9681 0.0736 3.4711 39 1 10.3506 -0.5798 2.1019 40 1 10.2035 1.1931 2.1578 41 1 8.7186 1.3472 4.8372 42 1 10.1639 1.4348 5.8720 43 1 10.0947 2.3698 4.3586 44 1 10.4482 -1.8921 4.2265 45 1 10.3703 -1.0535 5.7948 46 1 8.9250 -1.1415 4.7600 47 1 12.3796 -0.4576 3.5547 48 1 12.2332 1.3154 3.6095 49 1 15.5947 0.6566 4.9626 50 1 4.1205 -2.1325 -0.0002 51 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345883859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:59 Heat of formation + Delta-G solvation = -55.727227 kcal Electronic energy + Delta-G solvation = -26135.696287 eV Core-core repulsion = 22612.193148 eV Total energy + Delta-G solvation = -3523.503139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.20706 -39.38812 -37.22139 -35.35679 -33.65054 -32.50087 -31.88966 -31.16945 -28.58580 -27.13620 -26.52368 -26.32236 -25.64778 -23.51647 -22.91630 -22.26258 -20.82645 -19.77044 -18.24157 -17.06858 -16.38908 -16.00313 -15.85411 -15.58320 -15.25019 -15.18397 -14.52259 -14.18869 -14.14444 -13.82774 -13.66247 -13.47357 -13.15028 -12.96933 -12.80837 -12.71719 -12.53891 -12.24820 -12.18245 -12.07043 -12.04130 -11.37548 -11.26086 -11.19120 -11.14781 -11.03373 -11.00750 -10.84283 -10.65496 -10.41021 -10.24829 -9.88713 -9.67672 -9.17365 -9.12789 -8.92140 -8.70042 -8.68640 -8.37052 -6.00838 -4.02090 1.08060 1.17045 2.84170 3.29388 3.36300 3.37950 3.40299 3.58185 4.44219 4.51478 4.53893 4.66438 4.71506 4.79048 4.81089 4.99240 5.02464 5.22866 5.24697 5.30422 5.34718 5.39462 5.46934 5.51355 5.58219 5.60002 5.62363 5.67248 5.74554 5.84582 5.86649 5.99693 6.05111 6.16332 6.19175 6.22197 6.29330 6.34494 6.38815 6.45540 6.57407 6.62040 6.76991 6.78887 7.05549 7.06415 7.12244 7.63482 7.75632 7.77105 7.98042 8.39308 8.46039 9.02963 9.61090 11.10597 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.002033 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.652038 B =13768.729111 C =13986.146686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.081 4.081 6 C -0.062 4.062 7 C -0.104 4.104 8 H 0.095 0.905 9 C -0.147 4.147 10 C 0.511 3.489 11 O -0.546 6.546 12 N -0.720 5.720 13 C 0.128 3.872 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.127 4.127 17 C 0.036 3.964 18 C -0.511 4.511 19 H 0.060 0.940 20 C 0.055 3.945 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.111 4.111 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.067 0.933 46 H 0.028 0.972 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.259 0.741 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.241 -2.042 -7.556 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.081 4.081 6 C -0.100 4.100 7 C -0.126 4.126 8 H 0.113 0.887 9 C -0.204 4.204 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.372 5.372 13 C 0.005 3.995 14 C -0.073 4.073 15 C -0.184 4.184 16 C -0.184 4.184 17 C -0.002 4.002 18 C -0.549 4.549 19 H 0.078 0.922 20 C -0.146 4.146 21 N -0.533 5.533 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.129 4.129 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.069 0.931 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.594 -1.968 -8.335 27.939 hybrid contribution 0.339 0.024 1.377 1.418 sum -26.256 -1.944 -6.958 27.232 Atomic orbital electron populations 1.20781 0.91403 1.02673 1.02198 1.19910 0.95969 0.93302 1.00288 1.21014 0.94172 0.97463 1.01081 1.21084 0.94093 0.97771 1.00111 1.19908 0.95599 0.93152 0.99435 1.20404 0.89902 1.04516 0.95140 1.21261 0.92501 1.00685 0.98131 0.88666 1.21860 1.02314 0.95821 1.00411 1.20551 0.89545 0.76332 0.83961 1.90691 1.70096 1.49888 1.31729 1.46221 1.08906 1.73840 1.08196 1.21620 0.77822 1.01578 0.98504 1.20903 1.00179 0.95108 0.91131 1.21761 0.97109 0.97729 1.01832 1.21760 0.97682 0.96875 1.02084 1.19092 0.86220 0.97408 0.97457 1.21223 0.91712 1.49709 0.92247 0.92204 1.25026 0.97190 0.95581 0.96790 1.69980 1.02238 1.50521 1.30601 0.86587 0.78871 0.77530 0.85293 1.19809 1.21137 1.21143 1.21085 0.94015 0.97729 1.00029 1.21019 0.94192 0.97445 1.01192 0.91329 0.91643 0.91646 0.86247 0.86013 0.90245 0.90038 0.92054 0.91210 0.91992 0.76690 0.91875 0.91892 0.95270 0.91433 0.93368 0.93371 0.91445 0.95272 0.96350 0.96359 0.93101 0.85977 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.75 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -0.98 9.70 -39.58 -0.38 -1.37 16 4 C -0.11 -1.01 9.70 -39.58 -0.38 -1.40 16 5 C -0.08 -0.76 4.71 -104.62 -0.49 -1.25 16 6 C -0.06 -0.65 4.19 -27.88 -0.12 -0.77 16 7 C -0.10 -1.09 2.71 -91.77 -0.25 -1.34 16 8 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 9 C -0.15 -1.31 8.66 37.16 0.32 -0.99 16 10 C 0.51 7.38 7.15 -10.98 -0.08 7.30 16 11 O -0.55 -10.08 15.92 5.56 0.09 -9.99 16 12 N -0.72 -10.27 4.85 -60.29 -0.29 -10.57 16 13 C 0.13 2.25 4.56 -4.04 -0.02 2.23 16 14 C -0.07 -1.37 0.54 -154.51 -0.08 -1.46 16 15 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.04 0.87 4.04 -27.89 -0.11 0.76 16 18 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 19 H 0.06 1.52 5.68 -52.49 -0.30 1.23 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 21 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 22 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C -0.11 -0.96 7.97 -39.58 -0.32 -1.27 16 27 C -0.12 -0.97 9.70 -39.58 -0.38 -1.35 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 31 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 34 H 0.08 0.93 7.90 -51.93 -0.41 0.52 16 35 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 36 H 0.07 0.56 6.27 -51.93 -0.33 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.40 4.82 5.58 -40.82 -0.23 4.59 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 42 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 46 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.12 0.92 8.04 -52.49 -0.42 0.50 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 401.67 15.07 6.05 6.05 Total: -1.00 -31.09 401.67 -9.69 -40.78 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.94 Total: 1.94 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.31 Total: -18.70 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.44 Total: -36.22 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.09 -9.69 -40.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.945 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds