Wall clock time and date at job start Tue Mar 31 2020 11:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09003 * 109.47417 * 305.00034 * 7 6 5 9 9 C 1.52998 * 109.47127 * 65.00023 * 7 6 5 10 10 C 1.50703 * 109.46887 * 185.00098 * 7 6 5 11 11 O 1.21276 * 120.00397 * 359.97438 * 10 7 6 12 12 N 1.34783 * 119.99626 * 180.02562 * 10 7 6 13 13 C 1.46503 * 119.99655 * 180.02562 * 12 10 7 14 14 C 1.52999 * 109.46915 * 179.97438 * 13 12 10 15 15 C 1.52995 * 109.46954 * 299.99607 * 14 13 12 16 16 C 1.53004 * 109.47117 * 60.00024 * 14 13 12 17 17 C 1.52997 * 109.47006 * 179.97438 * 14 13 12 18 18 C 1.50695 * 109.47419 * 179.97438 * 17 14 13 19 19 H 1.08002 * 119.99638 * 0.02562 * 18 17 14 20 20 C 1.37880 * 120.00412 * 179.97438 * 18 17 14 21 21 N 1.31513 * 119.99593 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00000 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47059 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47042 * 120.00016 * 22 20 18 25 25 H 1.48504 * 109.46897 * 240.00038 * 22 20 18 26 26 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 27 27 C 1.38234 * 120.00063 * 359.97438 * 26 5 4 28 28 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 29 29 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 30 30 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 32 32 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 33 33 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 34 34 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 35 35 H 1.09002 * 109.47282 * 179.97438 * 9 7 6 36 36 H 1.08997 * 109.47593 * 299.99810 * 9 7 6 37 37 H 1.08998 * 109.47300 * 60.00058 * 9 7 6 38 38 H 0.96995 * 120.00287 * 359.97438 * 12 10 7 39 39 H 1.09003 * 109.46848 * 299.99920 * 13 12 10 40 40 H 1.08997 * 109.47048 * 59.99646 * 13 12 10 41 41 H 1.08997 * 109.47043 * 60.00633 * 15 14 13 42 42 H 1.09002 * 109.46666 * 179.97438 * 15 14 13 43 43 H 1.09003 * 109.47298 * 300.00042 * 15 14 13 44 44 H 1.08998 * 109.47564 * 59.99903 * 16 14 13 45 45 H 1.09000 * 109.46969 * 180.02562 * 16 14 13 46 46 H 1.09002 * 109.46677 * 299.99906 * 16 14 13 47 47 H 1.09003 * 109.47043 * 300.00242 * 17 14 13 48 48 H 1.08997 * 109.47495 * 59.99788 * 17 14 13 49 49 H 0.97008 * 119.99567 * 179.97438 * 21 20 18 50 50 H 1.08002 * 119.99673 * 179.97438 * 26 5 4 51 51 H 1.08000 * 120.00005 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 0.8378 1.9952 9 6 5.8758 -1.3116 2.1361 10 6 7.7851 0.1209 1.4639 11 8 8.3922 0.2028 0.4172 12 7 8.4536 0.1395 2.6340 13 6 9.9137 0.2604 2.6416 14 6 10.4182 0.2574 4.0860 15 6 9.8048 1.4372 4.8428 16 6 10.0113 -1.0516 4.7656 17 6 11.9429 0.3831 4.0939 18 6 12.4399 0.3808 5.5165 19 1 11.7383 0.2976 6.3334 20 6 13.7903 0.4839 5.7753 21 7 14.6446 0.5837 4.7805 22 14 14.4062 0.4803 7.5389 23 1 13.2526 0.3576 8.4658 24 1 15.3271 -0.6673 7.7392 25 1 15.1285 1.7485 7.8134 26 6 3.5805 -1.1972 0.0000 27 6 2.1981 -1.1972 -0.0058 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 0.0004 32 1 4.1205 2.1324 0.0104 33 1 6.1439 -0.8890 -0.5025 34 1 6.1439 0.8909 -0.4990 35 1 6.2356 -1.3139 3.1650 36 1 4.7895 -1.4012 2.1305 37 1 6.3124 -2.1524 1.5971 38 1 7.9681 0.0736 3.4711 39 1 10.3506 -0.5798 2.1019 40 1 10.2035 1.1931 2.1578 41 1 8.7186 1.3472 4.8372 42 1 10.1639 1.4348 5.8720 43 1 10.0947 2.3698 4.3586 44 1 10.4482 -1.8921 4.2265 45 1 10.3703 -1.0535 5.7948 46 1 8.9250 -1.1415 4.7600 47 1 12.3796 -0.4576 3.5547 48 1 12.2332 1.3154 3.6095 49 1 15.5947 0.6566 4.9626 50 1 4.1205 -2.1325 -0.0002 51 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345883859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:58 Heat of formation + Delta-G solvation = -71.361331 kcal Electronic energy + Delta-G solvation = -26136.374233 eV Core-core repulsion = 22612.193148 eV Total energy + Delta-G solvation = -3524.181085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24029 -40.23412 -38.72098 -36.20877 -35.25870 -33.99825 -32.93064 -31.77364 -29.38274 -28.97721 -27.96088 -27.65744 -26.39338 -25.09911 -23.70807 -23.35423 -21.58697 -20.88863 -19.74011 -18.38211 -18.15151 -16.93285 -16.81603 -16.61173 -16.41527 -16.21151 -15.89192 -15.38634 -15.16056 -14.84925 -14.60341 -14.49545 -14.31601 -14.21125 -13.94949 -13.93066 -13.59781 -13.39340 -13.18335 -12.91397 -12.86447 -12.75876 -12.69583 -12.58753 -12.34453 -12.23776 -12.07958 -12.01037 -11.95164 -11.83517 -11.69627 -11.53882 -11.12577 -10.88153 -10.65815 -10.52603 -10.04175 -9.75904 -9.32359 -8.14377 -6.22206 0.44901 0.55426 1.41648 1.42648 1.54474 1.67014 2.24196 2.44932 2.88385 3.20112 3.64477 3.87132 3.92505 3.97315 4.07009 4.09457 4.11395 4.21455 4.22550 4.26117 4.43004 4.48879 4.65957 4.69452 4.72216 4.76757 4.81229 4.86342 4.88316 4.91500 4.95342 4.96550 5.03896 5.11070 5.12652 5.18772 5.25150 5.30850 5.35676 5.40915 5.48300 5.50157 5.53910 5.57552 5.58151 5.76693 5.79134 5.80286 5.89857 6.18453 6.30116 6.61174 6.93369 7.29227 7.45615 8.98282 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.034028 B = 0.002033 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.652038 B =13768.729111 C =13986.146686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.091 4.091 6 C -0.056 4.056 7 C -0.092 4.092 8 H 0.115 0.885 9 C -0.143 4.143 10 C 0.509 3.491 11 O -0.590 6.590 12 N -0.708 5.708 13 C 0.141 3.859 14 C -0.065 4.065 15 C -0.122 4.122 16 C -0.121 4.121 17 C 0.039 3.961 18 C -0.512 4.512 19 H 0.074 0.926 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.960 3.040 23 H -0.256 1.256 24 H -0.285 1.285 25 H -0.285 1.285 26 C -0.116 4.116 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.044 0.956 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.071 0.929 47 H -0.015 1.015 48 H -0.015 1.015 49 H 0.259 0.741 50 H 0.130 0.870 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.633 -2.479 -5.704 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.114 4.114 8 H 0.133 0.867 9 C -0.200 4.200 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.360 5.360 13 C 0.017 3.983 14 C -0.065 4.065 15 C -0.179 4.179 16 C -0.179 4.179 17 C 0.002 3.998 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.204 4.204 21 N -0.580 5.580 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.134 4.134 27 C -0.145 4.145 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.251 0.749 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.068 0.932 50 H 0.148 0.852 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.031 -2.410 -6.451 30.810 hybrid contribution 1.354 0.167 0.704 1.535 sum -28.677 -2.243 -5.747 29.333 Atomic orbital electron populations 1.20824 0.89753 1.03533 1.02863 1.20254 0.97322 0.93133 0.99291 1.21255 0.93983 0.98440 1.00875 1.21227 0.94697 0.97838 1.00380 1.19802 0.94632 0.93818 1.00873 1.20289 0.90978 1.03213 0.94931 1.21248 0.88907 1.02520 0.98683 0.86726 1.21863 1.03183 0.94309 1.00657 1.21313 0.91187 0.74789 0.82994 1.90679 1.71382 1.51704 1.33335 1.46006 1.07205 1.73657 1.09160 1.21193 0.80068 0.99851 0.97225 1.20709 0.96247 0.97192 0.92398 1.21697 0.99586 0.96210 1.00419 1.21695 1.00332 0.95131 1.00705 1.18976 0.90516 0.94250 0.96082 1.21630 0.91997 1.48138 0.93262 0.90834 1.25978 0.97743 0.95527 1.01164 1.70137 1.02503 1.52245 1.33112 0.85469 0.78574 0.77242 0.80186 1.17948 1.21091 1.21112 1.21224 0.94527 0.97737 0.99951 1.21282 0.94053 0.98382 1.00786 0.90676 0.90741 0.90892 0.84762 0.85650 0.91350 0.91641 0.90840 0.89841 0.92582 0.74902 0.93779 0.93824 0.91094 0.92526 0.94487 0.94460 0.92554 0.91050 0.99659 0.99695 0.93212 0.85235 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.23 0.71 -0.25 16 2 C -0.10 -1.36 5.88 -19.87 -0.12 -1.48 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.12 -2.05 9.70 22.27 0.22 -1.84 16 5 C -0.09 -1.60 4.71 -19.86 -0.09 -1.70 16 6 C -0.06 -1.15 4.19 29.85 0.12 -1.03 16 7 C -0.09 -1.78 2.71 -11.54 -0.03 -1.81 16 8 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 9 C -0.14 -2.16 8.66 71.98 0.62 -1.53 16 10 C 0.51 14.34 7.15 87.66 0.63 14.97 16 11 O -0.59 -22.26 15.92 -3.02 -0.05 -22.31 16 12 N -0.71 -19.12 4.85 -463.05 -2.25 -21.37 16 13 C 0.14 5.05 4.56 86.38 0.39 5.44 16 14 C -0.07 -2.44 0.54 -52.18 -0.03 -2.47 16 15 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 16 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 17 C 0.04 2.01 4.04 29.85 0.12 2.13 16 18 C -0.51 -27.42 7.65 25.60 0.20 -27.22 16 19 H 0.07 3.67 5.68 -2.91 -0.02 3.66 16 20 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 21 N -0.94 -57.28 13.29 21.45 0.28 -57.00 16 22 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 C -0.12 -1.82 7.97 22.27 0.18 -1.64 16 27 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.51 8.09 -2.39 -0.02 0.49 16 30 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 31 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 32 H 0.13 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 34 H 0.06 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.07 0.94 7.56 -2.39 -0.02 0.93 16 36 H 0.08 1.08 6.27 -2.39 -0.01 1.06 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.41 8.56 5.58 -92.71 -0.52 8.04 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 42 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 2.00 6.62 -2.39 -0.02 1.98 16 46 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 47 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 48 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 50 H 0.13 1.75 8.04 -2.91 -0.02 1.72 16 51 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -70.11 401.67 5.37 -64.74 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.37 Total: 18.78 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.98 Total: -28.47 kcal Atomic # 7 Polarization: -76.40 SS G_CDS: -1.96 Total: -78.36 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.11 5.37 -64.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.618 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds